BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470502 Length=1276 Score E Sequences producing significant alignments: (Bits) Value AT1G05100.1 | Symbols: MAPKKK18 | mitogen-activated protein kin... 1978 0.0 > AT1G05100.1 | Symbols: MAPKKK18 | mitogen-activated protein kinase kinase kinase 18 | chr1:1469610-1470881 FORWARD LENGTH=1272 Length=1272 Score = 1978 bits (1071), Expect = 0.0 Identities = 1212/1279 (95%), Gaps = 13/1279 (1%) Strand=Plus/Plus Query 1 AAACATTCaaaaaaaaaaaaaaaaCATTTCTTTTTTATTACTCTCATCTTTTTTAGTATC 60 ||||||||||||||||||||||| ||||| |||||| |||||| ||||||||||||||| Sbjct 1 AAACATTCAAAAAAAAAAAAAAACCATTTTTTTTTTCTTACTCAAATCTTTTTTAGTATC 60 Query 61 ATTCTCCAAATGAATTGGACTAGAGGAAAAACTATAGGCCGTGGCTCAACAGCCACCGTT 120 ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| Sbjct 61 ATTCTCCAAATGAATTGGACTAGAGGAAAAACTTTAGGCCGTGGCTCAACGGCCACCGTT 120 Query 121 TCCGCCGCCACCTGTTACAAATCCGGCGAAACAATCGCCGTTAAATCCGCCGAGTTTCAC 180 ||||||||||| ||| || |||||||||||||| ||||||| |||||||||||||||||| Sbjct 121 TCCGCCGCCACTTGTCACGAATCCGGCGAAACACTCGCCGTAAAATCCGCCGAGTTTCAC 180 Query 181 CGGTCGGAGTTTTTGCAAAGAGAAGCCAAGATTCTCTCCTCATTGAATTCTCCGTACGTC 240 ||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 181 CGGTCGGAGTTCTTGCAAAGAGAAGCCAAGATTCTCTCCTCATTAAACTCTCCGTACGTC 240 Query 241 ATCGGATACAGAGGATGCGAAATTACGAGAGAG-CCTGTCTACAACAACGGAGAAGCTAC 299 ||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||| Sbjct 241 ATCGGATACAGAGGATGCGAAATTACGAGAGAGCCCT-TCCACAACAACGGAGAAGCTAC 299 Query 300 GACTTACAATCTTCTCATGGAGTACGCGCCGTACGGAACGTTGACCGACGTAGCGATCAA 359 |||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||| Sbjct 300 GACTTACAGTCTTCTTATGGAGTACGCGCCGTACGGAACGTTGACCGACGTAGCGACCAA 359 Query 360 GAACGGCGGTTTCATCGACGAGGCTCGGGTCGTGAAGTACACGCGCCAGATACTTCTTGG 419 ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 GAACGGCGGCTTCATTGACGAGGCTCGGGTCGTGAAGTACACGCGCCAGATACTTCTTGG 419 Query 420 TTTGGAGTACATTCATAACTCCAAGGGAATTGCGCATTGCGACATTAAGGGAAGCAACGT 479 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 420 GTTGGAGTACATTCATAACTCAAAGGGAATTGCGCATTGCGACATTAAGGGAAGCAACGT 479 Query 480 GTTGATCGGAGAGAACGGAGAAGCCAAGATCGCTGATTTCGGATGTGCGAAATGGGTTGA 539 |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 480 GTTGGTCGGAGAGAACGGAGAAGCCAAGATCGCTGATTTCGGGTGTGCGAAATGGGTTGA 539 Query 540 ACCGGAATTAACCGAACCGGTTAGAGGAACGCCGGTGTTTATGGCTCCGGAAGTGGCGCG 599 ||||||| ||||||||||||||||||||||||||| ||| |||||||| |||| |||||| Sbjct 540 ACCGGAAATAACCGAACCGGTTAGAGGAACGCCGGCGTTCATGGCTCCAGAAGCGGCGCG 599 Query 600 TGGAGAAAGACAAGGGAAAGAGAGTGATATTTGGGCGGTGGGTTGTACGGTGATAGAGAT 659 |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 600 TGGAGAGAGACAAGGGAAAGAGAGTGATATATGGGCGGTGGGTTGTACGGTGATAGAGAT 659 Query 660 GGTTACCGGGTCCCCGCCGTGGATTGGAGCGGATTCGACCGATCCGGTTTCGGTTCTTTA 719 |||||||||||| | |||||||||||| ||||||| ||||| ||||||||||||||||| Sbjct 660 GGTTACCGGGTCTCAGCCGTGGATTGGGGCGGATTTTACCGACCCGGTTTCGGTTCTTTA 719 Query 720 CCGGGTCGGATATTTAGGTGAGTCACCTGAGCTGCCTTGCTCGCTTACGGAACAAGCAAA 779 ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct 720 CCGGGTCGGATATTTAGGTGAGTTACCAGAGCTGCCTTGCTCGCTTACGGAACAAGCAAA 779 Query 780 GGATTTTTTAGGAAAGTGTTTGAAAAAAGAAGCGAAGGAGAGATGGACAGCGAGTCAACT 839 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 780 GGATTTTTTAGGAAAGTGTTTGAAAAAAGAAGCGACGGAGAGATGGACAGCGAGTCAACT 839 Query 840 ACTAAACCATCCCTTCTT-GTTGAATAAAGAACCGGAATTGGTAACCGGTTTGGTTACGA 898 |||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||| Sbjct 840 ACTAAACCATCCGTTCTTGGTT-AATAAAGAACCGGAATTGGTAACCGGTTTGGTTACGA 898 Query 899 ACTCACCGACAAGTGTGACGGATCAAATGTTCTGGAGATCAGTGGAAGAGGAGGTGTCAG 958 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 ACTCACCGACAAGTGTGACGGATCAAATGTTCTGGAGATCAGTGGAAGAGGAGGTGTCAG 958 Query 959 AGGACCGTCCAAGCTGGTGGGAATGTCACGAGGATGAGAGAATTGGAGTGCTAAGCTGGA 1018 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 AGGACCGTTCAAGCTGGTGGGAATGTCACGAGGATGAGAGAATTGGAGTGCTAAGCTGGA 1018 Query 1019 TTGGTCATGTTGTGGTGGAGTCCACATGGGACTTGGACGGTGAGGATTGGATCACGGTTC 1078 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1019 TTGGTCATGTTGTGGTGGAGTCCACATGGGACTTGGACGGTGAGGATTGGATCACGGTTC 1078 Query 1079 GACGGAATAATGATTAGTCGGTTCACATGAGAGGAGCGTTGATTATTCGATTCAATTAGT 1138 |||||||| | | |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1079 GACGGAAT--T-A---GTCGGTTCACATGA-AGGAGCGTTGATTATTCGATTCAATTAGT 1131 Query 1139 GA-GAATATTGTTTTAGTCTAGTAGAAGCTGAGGTTTAGAGAAATTCATGTACATTTGCT 1197 || || |||||||||||| ||||||||| ||||||||||||| ||||||||||||| || Sbjct 1132 GAAGA-TATTGTTTTAGTTTAGTAGAAGTTGAGGTTTAGAGATTTTCATGTACATTTCCT 1190 Query 1198 AATTCATCATTTTTTATCCCCACAAATCCAAATTTTGTTATCCATTGATAATATGTTACA 1257 ||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||| | Sbjct 1191 AATTCATCATTTTTTATCCCCACAAATCCAATTTTTGTTATTCATTGATTATATGTTATA 1250 Query 1258 ATATAATTCATGATTGATT 1276 |||| | |||||||||||| Sbjct 1251 ATATGAGTCATGATTGATT 1269 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62750681250 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5