BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470512
Length=866
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05190.1 | Symbols: emb2394 | Ribosomal protein L6 family | ... 1227 0.0
> AT1G05190.1 | Symbols: emb2394 | Ribosomal protein L6 family
| chr1:1502344-1503830 REVERSE LENGTH=935
Length=935
Score = 1227 bits (664), Expect = 0.0
Identities = 751/791 (95%), Gaps = 13/791 (2%)
Strand=Plus/Plus
Query 1 ATGGATAAGTCTTTTCTGGATAAAACACTCTTCTTCTTCTCTCCATCCTCCTT-TGGAGC 59
|||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||
Sbjct 1 ATGGATAAGTCTTTTCTGGATAAAACGCTCTTCTTCTTCTCTTCATCCTCCTTCTGGAGC 60
Query 60 AGAGCTAAGAG---C-TC--C--ATC--ATCAATGGCTTCCTCACTCGTCTCTTCCTTTC 109
|||||| |||| | || | ||| |||||||||||||||||||||||| || ||||
Sbjct 61 AGAGCTTAGAGCTCCATCATCAAATCTTATCAATGGCTTCCTCACTCGTCTCATCTTTTC 120
Query 110 AACCCAGGTCAGCATTTTTGGGAGATAGAAATGTGTTCAAGGTCTCAAGCACACCTTTTG 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AACCCAGGTCAGCATTTTTGGGAGATAGAAATGTGTTCAAGGTCTCAAGCACACCTTTTG 180
Query 170 CTCAAGTTGGTTACTCCAGTAAGACCATTGAGTGCAAGGAATCAAGGATAGGAAAGCAAC 229
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 181 CTCAAGTGGGTTACTCCAGTAAGACCATTGAGTGCAAAGAATCAAGGATAGGAAAGCAAC 240
Query 230 CGATCGCTGTACCTTCCAATGTTACCATTGCATTGGAAGGTCAAGACTTGAAAGTGAAAG 289
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 241 CGATCGCTGTACCTTCCAATGTAACCATTGCATTGGAAGGTCAAGACTTGAAAGTGAAGG 300
Query 290 GTCCATTAGGAGAGCTGGCTTTAACTTACCCACGCGAAGTTGAACTTACCAAGGAAGAAT 349
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 301 GTCCATTAGGAGAGCTGGCTTTAACTTACCCACGCGAAGTTGAGCTTACAAAGGAAGAAT 360
Query 350 CCGGTTTCTTAAGGGTCaaaaaaaCAGTCGAAACTAGAAGAGCCAACCAAATGCACGGCC 409
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 361 CCGGTTTCTTAAGGGTCAAAAAAACCGTCGAAACTAGAAGAGCCAACCAAATGCACGGCC 420
Query 410 TTTTCAGGACGCTTACCGATAACATGGTTGTGGGAGTATCAAAGGGATTTGAGAAAAAAC 469
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 421 TTTTCAGGACGCTTACCGATAACATGGTTGTGGGAGTATCAAAGGGATTTGAGAAAAAGC 480
Query 470 TTATACTTGTGGGTGTTGGTTATCGTGCAACAGTCGAAGGGAAA-GAGCTGGTGCTGAAT 528
|||||||||||||||||||||||||||||||||| | | ||||| ||||||||||| |||
Sbjct 481 TTATACTTGTGGGTGTTGGTTATCGTGCAACAGTAG-ACGGAAAGGAGCTGGTGCTAAAT 539
Query 529 CTCGGGTTCTCACACCCGGTTAAGATGCAGATACCGGATAGTCTGAAAGTGAAAGTGGAA 588
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 540 CTCGGGTTTTCACACCCGGTGAAGATGCAGATACCGGATAGTCTGAAAGTGAAAGTGGAA 599
Query 589 GAGAACACAAGAATCACTGTGAGTGGATACGACAAGAGCGAAATCGGGCAGTTTGCTGCT 648
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GAGAACACAAGAATCACTGTGAGTGGATACGACAAGAGCGAAATCGGGCAGTTTGCTGCA 659
Query 649 ACTGTTAGGAAGTGGAGGCCACCAGAGCCATACAAAGGTAAAGGAGTCAAGTATTCCGAC 708
|| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 660 ACGGTTAGGAAGTGGAGGCCACCAGAGCCATACAAGGGGAAAGGAGTCAAGTATTCCGAT 719
Query 709 GAGATCGTTCGGAGAAAGGAAGGAAAAGCTGGAAAGAAGAAGTGATCTTCATATTTCATT 768
||||| |||||||| |||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 720 GAGATAGTTCGGAGGAAGGAAGGAAAAGCTGGAAAGAAGAAATGATCTTCATTTTTCATT 779
Query 769 ATTATCTACTT 779
|||||||||||
Sbjct 780 ATTATCTACTT 790
Score = 148 bits (80), Expect = 7e-35
Identities = 87/90 (97%), Gaps = 1/90 (1%)
Strand=Plus/Plus
Query 778 TTTGCTCAAATCTGTTTAGAAATGAAGATGTTTGTTTTGGGATTCTTGAG-AAGTTTTTA 836
||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 822 TTTGCTCAAATTTGTTTAGAAATGAAGATGTTTGTGTTGGGATTCTTGAGTAAGTTTTTA 881
Query 837 AAGGAACCCATTAATTGTTTTTGATGCTCT 866
||||||||||||||||||||||||||||||
Sbjct 882 AAGGAACCCATTAATTGTTTTTGATGCTCT 911
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42246917627
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5