BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470540 Length=674 Score E Sequences producing significant alignments: (Bits) Value AT1G05385.1 | Symbols: LPA19, Psb27-H1 | photosystem II 11 kDa ... 1068 0.0 > AT1G05385.1 | Symbols: LPA19, Psb27-H1 | photosystem II 11 kDa protein-related | chr1:1582671-1583718 REVERSE LENGTH=746 Length=746 Score = 1068 bits (578), Expect = 0.0 Identities = 644/676 (95%), Gaps = 4/676 (1%) Strand=Plus/Plus Query 1 TTCTGAGGTTCTTGTTGTTATCAGACAGGAAGATTCATGGGTTTCCTTGTAGCTGCCATG 60 ||||||||||| |||||||||||||||| |||||||||||||||||||||||| | |||| Sbjct 35 TTCTGAGGTTCCTGTTGTTATCAGACAGAAAGATTCATGGGTTTCCTTGTAGCCGTCATG 94 Query 61 AACTTTTCTCCTACCTTGATGCATCACCATATCAAATCGAAG-CATCAATGTCAAAATGA 119 |||||||||||||| ||| ||||||||||||| ||||||||| || |||||||||||||| Sbjct 95 AACTTTTCTCCTACTTTGGTGCATCACCATATGAAATCGAAGCCA-CAATGTCAAAATGA 153 Query 120 AAAGCTTCTTCAGGGCCAAACATCATCTTTGTTTGATCGTCGTGGTTTCTTGAAATGTGT 179 |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 154 AAAGCTTCGTCAAGGCCAAACATCATCTTTGTTTGATCGTCGTGGTTTCTTGAAATGTGT 213 Query 180 TGTCGGTGCTTCTTCGCTT-ATGGCCGCATTTGAGTTTTCTGGAATACAAGCTCAGGCGG 238 ||| |||||||||||| || |||||| || |||||||||||||| |||||||||||||| Sbjct 214 TGTTGGTGCTTCTTCG-TTCATGGCCACAATTGAGTTTTCTGGATTACAAGCTCAGGCGT 272 Query 239 CAGAGGAAAAGGTAGAAGAAGGACAAGGAGTTGTTGGTGCTTTCAAGACTTTGTTTGATC 298 ||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||| Sbjct 273 CAGAGGAAAAGTTAGACGAAGGAGAAGGAGTTGTTGGTGCTTTCAAGACTTTGTTTGATC 332 Query 299 CTAATGAGAGAACAAAGTCTGGCAAAGAGTTACCAAAAGCTTACCTGAAATCTGCTAGAG 358 |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| Sbjct 333 CTAATGAGAGAACAAAGTCTGGCAAAGAGTTACCAAAAGCTTACTTGAAATCTGCAAGAG 392 Query 359 AGGTTGTCAAAACCATGAGAGAGTCATTGAAAGAGAACCCTAAAGACAATGCTAAGTTTA 418 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 393 AGGTTGTCAAAACCATGAGGGAGTCATTGAAAGAGAACCCTAAAGACAATGCTAAGTTCA 452 Query 419 GAAGAAGTGCTGATGCTGCTAAAGAATCTATTCGTGATTATCTGAGCAATTGGAGAGGAC 478 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 453 GAAGAAGTGCTGATGCTGCTAAAGAATCCATTCGTGATTATCTGAGCAATTGGAGAGGAC 512 Query 479 AAAAGACTGTTGCTGGAGAAGAATCATACGTGGAGCTGGAGAATGTAATCCGAGCTTTGG 538 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 513 AAAAGACTGTTGCCGGAGAAGAATCATACGTGGAGCTGGAGAATGTAATCCGCGCTTTGG 572 Query 539 CGAAATTTTACTCAAAGGCTGGTCCTTCTGCACCACTTCCTGATGAGGTTAAGACTGAGA 598 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 573 CGAAATTTTACTCAAAGGCAGGTCCTTCTGCACCACTTCCTGATGAGGTTAAGACTGAGA 632 Query 599 TTTTGGATGATCTTAACAAGGCTGAAGAGTTCTTGTGACATTTTTGCTGTAACATGTTTC 658 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 633 TTTTGGATGATCTTAACAAGGCTGAAGAGTTTTTGTGACATTTTTGCTGTAACATGTTTC 692 Query 659 ACTCATGTTATATATA 674 || ||||||||| ||| Sbjct 693 ACCCATGTTATACATA 708 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32601961403 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5