BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470552
Length=2541
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05520.1 | Symbols: | Sec23/Sec24 protein transport family ... 3973 0.0
AT4G14160.1 | Symbols: | Sec23/Sec24 protein transport family ... 1166 0.0
> AT1G05520.1 | Symbols: | Sec23/Sec24 protein transport family
protein | chr1:1630900-1635711 REVERSE LENGTH=2586
Length=2586
Score = 3973 bits (2151), Expect = 0.0
Identities = 2348/2445 (96%), Gaps = 6/2445 (0%)
Strand=Plus/Plus
Query 1 AAAACCATGTCAGAGATGGCGAGTATGGATCCAGAAGGAATCGATGGAGTTCGTATGACG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 AAAACCATGTCAGAGATGGCGAGTATGGATCCAGAAGGAATCGATGGAGTTCGTATGACG 62
Query 61 TGGAACGTTTGGCCTCGTACCAAAGTTGAAGCAAGCAAGTGTGTGATCCCTGTCGCTGCT 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 TGGAACGTTTGGCCTCGCACCAAAGTTGAAGCAAGCAAGTGTGTGATCCCTGTCGCTGCT 122
Query 121 TGTATCTCTCCGATCCGTTACCACCGTGATATTCCATCTGTTGATTATGCTCCTCTTCGT 180
|||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||
Sbjct 123 TGTATCTCTCCGATCCGTTACCACCGGGATATCCCATCTGTTGAATATGCTCCTCTTCGT 182
Query 181 TGTCGCACTTGTTCCGCTGCTCTTAACCCTTTTGCCCGTGTTGATACCCACGCCAAGATC 240
||||||| |||| ||||||||||||| |||||||| ||||||||| || ||||||||||
Sbjct 183 TGTCGCATTTGTACCGCTGCTCTTAATCCTTTTGCTCGTGTTGATTTCCTCGCCAAGATC 242
Query 241 TGGATCTGCCCTATTTGCTTCCAGAGAAACCACTTCCCTCATCACTACCATGCTATCTCC 300
|||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||| |||
Sbjct 243 TGGATCTGTCCTATTTGCTTCCAGAGAAACCACTTCCCTCCTCACTACCATGTTATGTCC 302
Query 301 GACACTAATGTGCCTTGTGAGCTGTATCCGCAGTACACTACGGTTGAATACACTCTGCCT 360
|| |||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 303 GAGACTAATGTCCCTTGTGAGCTCTATCCACAGTACACTACCGTTGAATACACTCTGCCT 362
Query 361 AACCCTTCTCAGCCTACTGGTGCTGGGAATTTTGATCAGAGTGGTGCTGTTTCCGGCCAG 420
|||||||||||||||||||||| ||| ||||||||||||| ||||||||||| || |||
Sbjct 363 AACCCTTCTCAGCCTACTGGTGTTGGCAATTTTGATCAGACCGGTGCTGTTTCTGGTCAG 422
Query 421 CCATCGCCTTCGGTGTTTGTTTTTGTCTTGGATACGTGTATGATTGAGGAGGAGTTTGGA 480
|| ||||| |||||||||||||||||| |||| |||||||||||||| ||||||||||||
Sbjct 423 CCTTCGCCGTCGGTGTTTGTTTTTGTCCTGGACACGTGTATGATTGAAGAGGAGTTTGGA 482
Query 481 TACGCGAAATCTGCGCTTAAGCAGGCGATCGGGTTGCTTCCGGAGAATGCATTGGTTGGG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 TACGCGAAATCTGCGCTTAAGCAGGCGATCGGGTTGCTTCCGGAGAATGCATTGGTTGGG 542
Query 541 TTTGTCTCGTTTGGGACGCAGGCGCATGTTCACGAGTTGGGTTTTTCTGATTTGACTAAA 600
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 543 TTTGTCTCGTTTGGGACGCAGGCGCATGTTCACGAGCTGGGGTTTTCTGATTTGACTAAA 602
Query 601 GTTTATGTCTTTAGGGGAGATAAGGAGATCTCCAAAGATC-AGATTTTGGAGCAGTTAGG 659
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 603 GTTTATGTCTTTAGGGGAGATAAGGAGATCTCCAAAGATCAAG-TTTTGGAGCAGTTAGG 661
Query 660 GCTTGGTGCTTCTGGGAGACGAACCCCGGTTGGTGGCTTTCCAATGGGGAGGGATAATTC 719
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 662 GCTTGGTGCTTCTGGGAGACGAAACCCGGTTGGTGGTTTTCCAATGGGGAGGGATAATTC 721
Query 720 CGGCAATTCCGGCTATTCGGGTGTTAATAGATTCTTGTTGCCAGCTTCTGAGTGTGAATT 779
| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 722 TGCCAATTTCGGCTATTCGGGTGTTAATAGATTCTTGTTGCCAGCTTCTGACTGTGAATT 781
Query 780 CACGATTGATTCGCTGTTGGAAGAGCTACAGACGGATCAGTGGCCTGTCCAAGCTGGACG 839
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 782 CACGATTGATTTGCTGTTGGAAGAGCTACAGACGGATCAGTGGCCTGTCCAGGCTGGACG 841
Query 840 TCGCCAGTCTCGGTGCACGGGAGTGGCTTTAAGTGTGGCTACGGGACTGCTTGGAGCTTG 899
|||||||| || ||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 842 GCGCCAGTCACGATGCACGGGAGTGGCTATAAGTGTGGCTACGGGACTACTTGGAGCTTG 901
Query 900 TTTTCCTGGAACTGGGGCTAGAATCGTTGCTTTAATTGGAGGACCATGTTCTGAGGGGCC 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 TTTTCCTGGAACTGGGGCTAGAATCGTTGCTTTAATTGGAGGACCATGTTCTGAGGGGCC 961
Query 960 AGGCACGATTGTGTCAAAGGATCTATCAGAACCTTTGCGTTCACATAAAGATCTCGATAA 1019
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 962 AGGCACGATTGTGTCAAAGGATCTATCAGAACCTTTGCGTTCACATAAAGATCTTGATAA 1021
Query 1020 AGATGCGGCTCCTTTCTATAAGAAAGCGGAGAAATTTTATGATGCTCTCGCAAACCAACT 1079
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1022 AGATGCGGCTCCGTTCTATAAGAAAGCGGAGAAATTTTATGATGCGCTCGCAAACCAACT 1081
Query 1080 GGTGAACCAAGGACATGTACTGGACCTTTTTGCATCCGCACTTGATCAGGTTGGTGTTGC 1139
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 GGTTAACCAAGGACATGTACTGGACCTTTTTGCATCCGCACTTGATCAGGTTGGTGTTGC 1141
Query 1140 TGAAATGAAAGCTGCGGTTGAAAGAACTGGAGGACTTGTTGTTTTATCAGAAAGTTTTGG 1199
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1142 TGAAATGAAAGCTGCGGTTGAAAGAACTGGAGGTCTTGTTGTTTTATCAGAAAGTTTTGG 1201
Query 1200 CCATTCTGTATTTAAGGATTCTTTTAAGCGAGTATTTGAAGATGGCGAAGAGTCTCTCGG 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 CCATTCTGTATTTAAGGATTCTTTTAAGCGAGTATTTGAAGATGGCGAAGAGTCTCTCGG 1261
Query 1260 CCTTTGTTTCAATGGTACACTTGAGATCTGCTGTTCAAAGGACATAAAAATCCAAGGGAT 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 CCTTTGTTTCAATGGTACACTTGAGATCTGCTGTTCAAAGGACATAAAAATCCAAGGGAT 1321
Query 1320 TATTGGGCCTTGTGCGTCATTGCAAAAGAAAGGCCCTAGCGTTGCTGATACAGTTATTGG 1379
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 TATTGGACCTTGTGCGTCTTTGCAAAAGAAAGGCCCTAGCGTTGCTGATACAGTTATTGG 1381
Query 1380 GGAGGGGAATACTACAGAATGGAAGATGTGTGGCCTCGATAAAAGTACTTGTTTGACAGT 1439
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1382 GGAGGGGAATACTACACAATGGAAGATGTGTGGCCTCGATAAAAGGACTTGTTTGACAGT 1441
Query 1440 CTTCTTTGATCTTTCTTCTAGTGATCAATCAAGTACTCCTGGAGGTGGAAATAACCAACT 1499
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1442 CTTCTTTGATCTTTCTTCTAGTGATCAATCAAGTGCTCCTGGAGGTGTAAATAACCAACT 1501
Query 1500 ATATTTACAATTTATGACAAGCTACCAAAATTCAAAAGGTAAAACATTACAGCGAGTAAC 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1502 ATATTTACAATTTATGACAAGCTACCAAAATTCAAAAGGTAAAACATTACAGCGAGTTAC 1561
Query 1560 TACTGTTACCAGACAATGGGTAGATACTGCTCTTAGCACAGAGGAATTGGTGCAAGGTTT 1619
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1562 TACTGTTACCAGACAATGGGTAGATACTGGTCTTAGCACAGAGGAATTGGTGCAAGGTTT 1621
Query 1620 TGATCAAGAAACTGCTGCTGTGGTTGTGGCCAGATTGGCCTCCTTGAAAATGGAAACAGA 1679
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1622 TGATCAAGAAACTGCTGCTGTGGTTGTGGCCAGATTAGCTTCCTTGAAAATGGAAACAGA 1681
Query 1680 GGAGGGATTTGATGCTACGCGATGGCTGGACCGGAACCTTATTCGTCTTTGTTCTAAATT 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1682 GGAGGGATTTGATGCTACGCGATGGCTGGACCGGAACCTTATTCGTCTTTGTTCTAAATT 1741
Query 1740 TGGTGATTACCGGAAGGATGATCCTGCTTCATTTACTCTAAATCCAAACTTTTCACTATT 1799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1742 TGGTGATTACCGGAAGGATGATCCTGCTTCATTTACTCTAAATCCAAACTTTTCACTATT 1801
Query 1800 CCCTCAGTTTACGTTTAATCTCCGACGCTCACAATTTGTGCAGGTATTCAACAATAGTCC 1859
||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1802 CCCTCAGTTTACGTTCAATCTCCGACGCTCACAGTTTGTGCAGGTGTTCAACAATAGTCC 1861
Query 1860 AGATGAAACTGCTTACAGCCGCATGCTATTGAACCGAGAAAGTATTTCAAACGCAGCCGT 1919
||| ||||||||||||| |||||||||||| |||||||||| |||||| |||||||| ||
Sbjct 1862 AGACGAAACTGCTTACAACCGCATGCTATTAAACCGAGAAAATATTTCGAACGCAGCTGT 1921
Query 1920 TATGATACAGCCATCTCTAACAACATATTCGTTTAACTCACTACCTCAACCTGCATTGTT 1979
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1922 TATGATTCAGCCATCTCTAACAACATATTCGTTTAACTCACTACCTCAACCTGCATTGTT 1981
Query 1980 GGATGTTGCTTCCATCGGTGCAGACCGTATCCTCTTGTTGGATTCTTACATTAGTGTTGT 2039
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1982 GGATGTTGCTTCCATTGGTGCAGACCGTATCCTCCTGTTGGATTCTTACATTAGTGTTGT 2041
Query 2040 CGTTTTCCATGGAATGACCATTGCACAGTGGCGCAACATGGGATATCAAAATCAGCCTGA 2099
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2042 CGTTTTCCATGGAATGACCATTGCACAGTGGCGCAACTTGGGATATCAAAATCAGCCTGA 2101
Query 2100 ACACCAGGCATTTGCACAACTCTTGGAAGCCCCTCAAGAAGATGCACAGATGATCATTCG 2159
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2102 ACACCAGGCATTTGCCCAACTCTTGGAAGCCCCTCAAGAAGATGCGCAGATGATCATTCG 2161
Query 2160 TGATCGTTTCCCTGTACCAAGATTAGTTGTTTGTGATCAACATGGATCCCAGGCAAGGTT 2219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2162 TGATCGTTTCCCTGTACCAAGATTAGTTGTTTGTGATCAACATGGATCCCAGGCAAGGTT 2221
Query 2220 TCTCTTAGCAAAGCTAAATCCGTCAGCGACATACAACAATGCGAGCGAGACGAATGCAGG 2279
||| ||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||
Sbjct 2222 TCTGTTAGCAAAGCTAAATCCGTCAGCAACATACAACAATGCAAGCGAGATGAATGCAGG 2281
Query 2280 CTCTGATATAATCTTCACGGATGATGTCAGTCTTCAAGTCTTCTTCCAACATCTTCAGAA 2339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2282 CTCTGATATAATCTTCACGGATGATGTCAGTCTTCAAGTCTTCTTCCAACATCTTCAGAA 2341
Query 2340 ATTGGCTGTTCAATCTTGAGAACACAGAGGTCTCTCTCTGCTTG-AGAG-AAGCCTGAGA 2397
||||||||||||||||||||||||||||||||||||| | ||| | || |||||
Sbjct 2342 ATTGGCTGTTCAATCTTGAGAACACAGAGGTCTCTCTGTTCTTCCATTTCAAT--TGAGA 2399
Query 2398 CAAGTACAAATAAAGAAGATGTAGTCATCGCTCACCAGAATGCCT 2442
||||| ||||||||||||||| |||| |||||||||| |||||||
Sbjct 2400 CAAGTTCAAATAAAGAAGATGCAGTCGTCGCTCACCAAAATGCCT 2444
Score = 91.6 bits (49), Expect = 3e-17
Identities = 54/56 (96%), Gaps = 1/56 (2%)
Strand=Plus/Plus
Query 2487 GTGATTCAACAAATTTTGTAGTTTC-ATTTGGTCATAGTATTATTATCTTTTCTCT 2541
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 2531 GTGATTCAACAAATTTTGTAGTTTCCATTTGGTCATAGTATTATCATCTTTTCTCT 2586
> AT4G14160.1 | Symbols: | Sec23/Sec24 protein transport family
protein | chr4:8167465-8173365 FORWARD LENGTH=2770
Length=2770
Score = 1166 bits (631), Expect = 0.0
Identities = 1541/1972 (78%), Gaps = 96/1972 (5%)
Strand=Plus/Plus
Query 433 GTGTTTGTTTTTG-TCTTGGATACGTGTATGATTGAGGAGGAGTTTGGATACGCGAAATC 491
|||||||| |||| || | |||||||| ||||||||||| || || ||||| || |||||
Sbjct 512 GTGTTTGTGTTTGTTC-TCGATACGTGCATGATTGAGGAAGAATTGGGATATGCCAAATC 570
Query 492 TGCGCTTAAGCAGGCGATCGGGTTGCTTCCGGAGAATGCATTGGTTGGGTTTGTCTCGTT 551
|| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 571 GGCTCTTAAGCAGGCGATCGGGTTGCTTCCGGAGAATGCTTTGGTTGGGTTTGTGTCGTT 630
Query 552 TGGGACGCAGGCGCATGTTCACGAGTTGGGTTTTTCTGATTTGACTAAAGTTTATGTCTT 611
||| || ||||| ||||| || || ||||| || ||||| || ||||||||| ||||||
Sbjct 631 TGGTACTCAGGCTCATGTGCATGAATTGGGGTTCTCTGAGATGTCTAAAGTTTTTGTCTT 690
Query 612 T-AGGGGAGAT-AAGGAGATCT-CCAAAGATCAGATTTTGGAGCAGTTAGGGCTT-GGTG 667
| | || | || ||| || | | |||| ||||| |||||||| ||||| |||||| |||
Sbjct 691 TAAAGGCA-ATAAAGAAG-T-TACCAAGGATCAAATTTTGGATCAGTTGGGGCTTGGGT- 746
Query 668 CTTCTGGGA-GACGAAC-CCCGGTTGGT-GGCTTTCCAATGGGGAG-GGATAATTCCGGC 723
||||| || || || | || || | || |||| || |||| | | || |||
Sbjct 747 CTTCTTCGAGGA-GAGCTCCTACTT-CTGGGTTTTCTAA--AGGAGCGCA-AA--ACGG- 798
Query 724 AATTCCGGCTA-TTCGGGTGTTAATAGATTCTTGTTGCCAGCTTCTGAGTGTGAATTCAC 782
||||| | | ||| |||||| | |||||| || |||| ||||| |||||||||| |||
Sbjct 799 -ATTCCAG--AGTTCCGGTGTTGACAGATTCCTGCTGCCCGCTTCGGAGTGTGAATACAC 855
Query 783 GA-TTGA-TTCGCTGTTGGAAGAGCTACAGA-CGGATCAGTGGCCTGTCCAAG-CTGG-- 836
| | || || ||| ||||| ||||| || | | || ||||||||||| | || | ||
Sbjct 856 -ACTGGACTT-GCTTTTGGATGAGCTCCA-ATCAGACCAGTGGCCTGTTC-AGCCAGGTC 911
Query 837 A-CGTCGCCAGTCTCGGTGCAC-GGGAGTGGCTTTAAGTGTGGCTACGGGACTGCTTGGA 894
| |||| ||| || ||||| ||| || || || ||||| ||| | ||| ||||||||
Sbjct 912 ATCGTCCCCA---ACGATGCACAGGG-GTTGCATTGAGTGTAGCTGCAGGATTGCTTGGA 967
Query 895 GCTTGTTTTCCTGGAACTGGGGCTAGAATCGTTGCTTTAATTGGAGGACCATGTTCTGAG 954
||||| || ||||||||||| |||||||| || ||||| ||||||| |||||| | |||
Sbjct 968 GCTTGCTTACCTGGAACTGGTGCTAGAATTGTAGCTTTGGTTGGAGGTCCATGTACAGAG 1027
Query 955 GGGCCAGGCACGATTGTGTCAAAGGATCTATCAGAACCTTTGCGTTCACATAAAGATCTC 1014
|| || || |||||| | ||||||||| | ||||| ||| |||| || || ||||||||
Sbjct 1028 GGCCCTGGAACGATTATCTCAAAGGATTTGTCAGATCCTGTGCGCTCCCACAAAGATCTA 1087
Query 1015 GATAAAGATGCGGCTCCTT-TCTATAAGAAAGC-GGAGAAATTTTATGAT-GCTCTCGCA 1071
||||||||||| ||||||| | ||||| ||||| | | || ||||||||| | | | |||
Sbjct 1088 GATAAAGATGCTGCTCCTTAT-TATAAAAAAGCTGTA-AAGTTTTATGATAG-TATTGCA 1144
Query 1072 AACCAACTGGTGAAC-CAAGGACATGTACTGGACCTTTTTGCATCCGCACTTGATCAGGT 1130
|| || || || | || || ||||| | |||||||| || || ||||||||||||||
Sbjct 1145 AAGCAGCTTGT-CGCTCAGGGTCATGTGTTAGACCTTTTCGCTTCTGCACTTGATCAGGT 1203
Query 1131 TGGTGTTGCTGAAATGAAAGCT-GCGGTTGAAAGAACTGGAGGACTTGTTGTTTTATCAG 1189
|| |||||||||||||||| | || |||||||| || || || || |||||| | || |
Sbjct 1204 CGGGGTTGCTGAAATGAAAG-TAGCCGTTGAAAGTACCGGTGGTCTCGTTGTTCTGTCTG 1262
Query 1190 AAAGTTTTGGCCATTCTGTATTTAAGGATTCTTTTAAG-CGAGTATTTGAAGATGGCGAA 1248
||||||||||||||||||||||||| ||||| |||||| || | ||||||||||||| |
Sbjct 1263 AAAGTTTTGGCCATTCTGTATTTAAAGATTCCTTTAAGAGGA-TGTTTGAAGATGGCG-A 1320
Query 1249 G-AGTCTCTCGGCCTTTGTTTCAATGGTACACTTGAGATCTGCTGTTCAAAGGACATAAA 1307
| | ||||| || || || |||||||| || |||||||| |||||||| ||||| ||
Sbjct 1321 GCACTCTCTTGGTCTCTGCTTCAATGGCACGCTTGAGATAAATTGTTCAAAAGACATCAA 1380
Query 1308 AATCCAAGGGATTATTGGGCCTTG-TGCGTCATT-GCAAAAGAAAGG-CCCTAGCGTTGC 1364
||| |||||| |||| |||||||| | | ||||| | |||||||||| ||| | |||||
Sbjct 1381 AATTCAAGGGGTTATCGGGCCTTGCT-CATCATTAG-AAAAGAAAGGTCCC-AATGTTGC 1437
Query 1365 TGATACAGTTATTGGGGAGGGGAATACTACAGAATGGAAGA-TGTGTGGCCTCGATAAAA 1423
||| ||||| ||||| ||||||||||| | | ||||| | ||||||||||||| || |
Sbjct 1438 TGACACAGTCATTGGAGAGGGGAATACCAGTGCTTGGAA-ATTGTGTGGCCTCGACAAGA 1496
Query 1424 GTACTTGTTTGACAGTCTTCTTTGATCTTTCTTCTAGTGATC-AATCAAGTACTCCTGGA 1482
|||| || ||||| || ||||||||||| ||||| | | | |||| | ||||||||
Sbjct 1497 GTACCTGCTTGACTGTATTCTTTGATCTATCTTC-A---ACCGGGTCAACTGCTCCTGGA 1552
Query 1483 GGTGGAAATAACCAACTATATTTACAATTTATGACAAGCTACCAAAATTCAAAAGGTAAA 1542
| | |||| | || | ||||| || ||||| ||||| |||||||| || ||||||||
Sbjct 1553 GCTTTAAATCAGCAGTTGTATTTGCAGTTTATCACAAGATACCAAAACTCTGAAGGTAAA 1612
Query 1543 ACATT-ACAGCGAGTAACTACTGTT-ACCAGACAATGGGTAGATACTGCTCTTAGCACAG 1600
| || | || || || ||| || |||||||| ||||||||||||||| | |||||||
Sbjct 1613 AGTTTGGC-CCGGGTTACAACT-TTAACCAGACAGTGGGTAGATACTGCTGTGAGCACAG 1670
Query 1601 AGG--AAT-TGGTGCAAGGTTTTGATCAAGAAACTGCTGCTGTGGTTGTGGCCAGATTGG 1657
||| ||| | |||||||| ||||| |||||||||||||| |||||| |||| |||||
Sbjct 1671 AGGTAAATCTTGTGCAAGGCTTTGACCAAGAAACTGCTGCAGTGGTTATGGCAAGATTAA 1730
Query 1658 CCTCCTTGAAAATGGAAACAGAGGAGGGATTTGATGCTACGCGATGGCTGGACCGGAAC- 1716
| ||||| ||||||||||||||||||||||||||||| || || ||||| || |||| |
Sbjct 1731 CTTCCTTAAAAATGGAAACAGAGGAGGGATTTGATGCAACTCGGTGGCTAGATCGGA-CT 1789
Query 1717 CTTATTCGTCTTTGTTCTAAATTTGGTGATTACCGGAAGGATGATCCTGCTTCATTTACT 1776
|| |||||||| ||||| ||||||||||| || | ||||||||||| | || |||||
Sbjct 1790 CTCATTCGTCTGTGTTCAAAATTTGGTGAATATAGAAAGGATGATCCAACCTCGTTTACG 1849
Query 1777 CT-AAATCCAAA-CTTTTCACTATTCCCTCAGTTTACGTTTAATCTCCGACGCTCACAAT 1834
|| ||| ||| | ||| || | |||||||| || | |||||| || | || ||||| |
Sbjct 1850 CTGAAA-CCATATCTTA-CATTGTTCCCTCAATTCATGTTTAACCTGAGGCGGTCACAGT 1907
Query 1835 TTGTGCAGGTATTCAACAATAGTCCAGATGAAACTGCTTACAGCCGCATGCTATTGAACC 1894
|||| ||||| || ||||||||||| |||||||| || ||| ||||||| | | ||||
Sbjct 1908 TTGTTCAGGTCTTTAACAATAGTCCTGATGAAACCGCATACTTCCGCATGTTGCTAAACC 1967
Query 1895 GAGAAAGTATTTCAAACGCAGCCGTTATGATACAGCCATCTCTAACAACATATTCGTTTA 1954
| |||| |||||||| ||| || ||||| || || ||||| || ||||||| || |
Sbjct 1968 GGGAAAACATTTCAAATGCAATTGTCATGATCCAACCTTCTCTGACGTCATATTCATTCA 2027
Query 1955 ACTCACTACCTCAACCTGCATTGTTGGATGTTGCTTCCATCGGTGCAGACC-GTATCCT- 2012
| ||| |||||| | || ||| ||||||| |||||||| | || ||| | || ||
Sbjct 2028 ATTCAGGACCTCAGGCAGCTTTGCTGGATGTGGCTTCCATTGCAGCTGACAAG-ATTCTT 2086
Query 2013 CTTGTTGGATTCTTACATTAGTGTTGTCGTTTTCCATGGAATGACCAT-T-GCACAGTGG 2070
|| || ||| | || |||||||||| || |||||||||||||| || | ||| | |||
Sbjct 2087 CTA-TTAGATGCATATTTTAGTGTTGTTGTCTTCCATGGAATGACTATATCGCA-A-TGG 2143
Query 2071 CGCAACATGGGATATCAAAATCAGCCTGAACACCAGGCATTTGCACAACTCTTGGAAGCC 2130
|| |||||||| ||||| ||||||||||||| |||| ||||| || | ||| ||||
Sbjct 2144 CGAAACATGGGTTATCATCATCAGCCTGAACATGAGGCCTTTGCTCAGTTATTGCAAGCT 2203
Query 2131 CCTCAAGAAGATGCACAGATGATCATTC-GTGATCGTTTCCCTGTACCAAGATTAGTTGT 2189
|| ||||| ||| | |||||| | | || | || |||||||| || || |||||||||||
Sbjct 2204 CCGCAAGAGGATTCCCAGATGTT-AGTCCGGGAGCGTTTCCCAGTCCCGAGATTAGTTGT 2262
Query 2190 TTGTGATCAACATGGATCCCAGGCAAGGTTTCTCTTAGCAAAGCTAAATCCGTCAGCGAC 2249
||||||||||||||||| |||||||||||| | || || ||||| ||||| ||||||||
Sbjct 2263 GTGTGATCAACATGGATCACAGGCAAGGTTTTTATTGGCTAAGCTGAATCCATCAGCGAC 2322
Query 2250 ATACAACAATGCGAGCGAGACGA-ATGCAGGCTCTGATATAATCTTCACGGATGATGTCA 2308
||||||||||| | ||||| | | || || || || ||||||||||| || ||||| |
Sbjct 2323 TTACAACAATGCAAACGAGATGTCA-GCTGGGTCAGACATAATCTTCACTGACGATGTGA 2381
Query 2309 GTCTTCAAGTCTTC-TTCCAACATCTTCAGAAATTGGCTGTTCAATCTTGAG 2359
| || |||||||| || |||||||||||||| |||| || ||||| ||||
Sbjct 2382 GCCTGCAAGTCTTTATTG-AACATCTTCAGAAACTGGCCGTGCAATCCTGAG 2432
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 126119694702
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5