BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470588
Length=1378
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05805.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 2012 0.0
> AT1G05805.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:1744773-1747693 FORWARD LENGTH=1425
Length=1425
Score = 2012 bits (1089), Expect = 0.0
Identities = 1317/1418 (93%), Gaps = 51/1418 (4%)
Strand=Plus/Plus
Query 1 TTTTCTTTTCGAAACCAAACTTTGCAAAtctctctctctcCATTTGGCGATAGAAGAAGT 60
||||||||| ||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 10 TTTTCTTTTAGAAACCAAACTTTTCAGATTTCTCTCTCTCCATTTGGCGATAGAAGAAGT 69
Query 61 CATGTACCAATCATCATCCTCCACGTCATCATCATCGCAGAGATCATCGCTTCCCGGCGG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 CATGTACCAATCATCATCCTCCACGTCATCATCATCGCAGAGATCATCGCTTCCCGGCGG 129
Query 121 CGGAGGACTGATCCGTTACGGCTCAGCTCCGGGATCGCTCCTAAACTCTGTGGTTGACGA 180
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 130 CGGAGGACTGATCCGTTACGGCTCAGCTCCGGGATCGTTTCTAAACTCTGTGGTTGACGA 189
Query 181 AGTCATCGGAGGAGGGGCATCAAACGCTCGTGACTTCACCGGTTATCAACCGTCGTCGGA 240
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 190 AGTCATCGGAGGAGGCTCATCAAACGCTCGTGACTTCACCGGCTATCAACCGTCGTCGGA 249
Query 241 TAACTTCATCGGTAA-TTTCTTCACC-G-GC-GCTGACTCATCCTCGCTGAGATCCGATT 296
||||||||||||||| ||| |||||| | || ||||||||||||||||||||||||||||
Sbjct 250 TAACTTCATCGGTAACTTT-TTCACCGGAGCTGCTGACTCATCCTCGCTGAGATCCGATT 308
Query 297 CGACGACTTGTGGAGT---CAACTCATCCGACGGACAGAAACAGCTAGG------CAATG 347
|||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 309 CGACGACTTGTGGAGTCAACAACTCATCCGACGGACAGAAACAGCTAGGCAATAACAATA 368
Query 348 ATAAT--GA-TAATAAAGATATCTTCCTGGACAGAACCTACGGTGGATTCAATGAGATCT 404
||||| | |||||||||||||||||| |||||| |||||||||||||||| |||||||
Sbjct 369 ATAATAATAGTAATAAAGATATCTTCCTCGACAGATCCTACGGTGGATTCAACGAGATCT 428
Query 405 CGCAACAACACAAGAGCAACGACATC---GGTGGAAATAGCTCAGGATCTTCTTACTCTC 461
|||||||||||||||||||||||||| || ||||| ||||||||| ||||||||||
Sbjct 429 CGCAACAACACAAGAGCAACGACATCGGAGGAGGAAACAGCTCAGGA---TCTTACTCTC 485
Query 462 TCGCTAGACAACGTAGCTCTCCCGCCGATTTCTTCACCTACCTCTCCGCAGATAAAAACA 521
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 486 TCGCTAGACAACGTAGCTCTCCCGCCGATTTCTTCACCTACCTCGCCTCAGATAAAAACA 545
Query 522 ATTTCTCGTTGAACCAACCAACCAGTGATTATAATCCGCAAGGGGGGTCTAATGCGGGAC 581
||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||
Sbjct 546 ATTTCTCGTTGAACCAACCAACCAGTGATTATAGTCCGCAAGGAGGGTCTAATGGGGGAC 605
Query 582 GAGGACATTCGAGATTGAAGTCTCAGCTAAGCTTCACGAGTCACGATTCTCTGGCTCGGA 641
|||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 606 GAGGACATTCCAGATTGAAGTCTCAGCTAAGCTTCACGAATCACGACTCTCTGGCTCGGA 665
Query 642 TCAACGAGGTCAATGAGACCCCTA-TCCATGACGGTTCAGGCCATTCGTTTTCTGCGGCT 700
|||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||
Sbjct 666 TCAACGAGGTCAATGAGACCCC-AGTCCACGACGGTTCAGGCCATTCGTTTTCTGCGGCT 724
Query 701 AGCTTTGGTGCCG-CAGCTACTGATTCTTGGGATGACGGTTCCGGTTCAATAGGGTTTAC 759
||||||||||| | || ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 725 AGCTTTGGTGCAGCCA-CTACTGATTCTTGGGATGACGGTTCCGGTTCGATAGGGTTTAC 783
Query 760 CGTGACTCGACCCAATAAACGATCCAAGGACATGGACTCTGGTCTCTTTTCACAGTATAG 819
||||||| | |||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 784 CGTGACTAGGCCCAGTAAACGATCCAAGGACATGGACTCTGGTCTCTTTTCGCAGTATAG 843
Query 820 TCTTCCTTCAGACACTTCAATGAACTATATGGATAACTTCATGCAGCTTCCGGAAGATTC 879
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 844 TCTTCCTTCAGACACTTCAATGAACTACATGGATAACTTCATGCAGCTTCCAGAAGATTC 903
Query 880 TGTACCCTGCAAAATCCGGGCCAAACGCGGCTGCGCCACCCATCCTAGAAGCATCGCCGA 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 904 TGTACCCTGCAAAATCCGGGCCAAACGCGGCTGCGCCACCCATCCTAGAAGCATCGCTGA 963
Query 940 GCGGGAGAGGAGAACGAGAATAAGCGGGAAGCTAAAGAAGCTACAAGATCTTGTCCCCAA 999
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 964 GCGGGAGAGGAGAACGAGAATAAGTGGGAAGCTAAAGAAGCTACAAGATCTTGTCCCCAA 1023
Query 1000 CATGGATAAGCAAACAAGCTATTCAGACATGCTGGATTTAGCTGTACAACACATCAAAGG 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 CATGGATAAGCAAACAAGCTATTCAGACATGCTGGATTTAGCTGTACAACACATCAAAGG 1083
Query 1060 CCTTCAACATCAACTTCAGAATTTGAAAAAAGATCAAGAGAATTGCACGTGTGGATGCAG 1119
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1084 CCTTCAGCATCAACTTCAGAATTTGAAAAAAGATCAAGAGAATTGCACGTGTGGGTGCAG 1143
Query 1120 TGAGAGACCAAGCTAGCT------------T-----CATCCTAATTTGATTTGCGTTGTT 1162
||||| |||||||||||| | ||||||||||| |||||| |||||
Sbjct 1144 TGAGAAACCAAGCTAGCTCAAACCCAAAGGTAGGGTCATCCTAATTTTATTTGCATTGTT 1203
Query 1163 CCGATTTCATTATATGAGAGAATTAGAGAAGATGTAAATAAA-TAGATTATATTACATGT 1221
||||||| || ||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1204 CCGATTTTATCATATGAGAGAATTAGAGAAGATGTAAATAAAATAGATTATATTAAATGT 1263
Query 1222 TTATTCCTCTTATAATTAAGCTTCTCATTCGTTATCATTATAA-ATTAGAACAGTGACAA 1280
|| |||||||||||||||||| |||||||||||||||||||| || |||||||||||||
Sbjct 1264 CTAATCCTCTTATAATTAAGCTCCTCATTCGTTATCATTATAAGAT-AGAACAGTGACAA 1322
Query 1281 TTGTCCATTATGTTTTTGTTTCAATTAGTTTTATGTTCTGAGTGTTTCTTATTTTGTAAG 1340
|||||||||||||||||||||||| |||| ||||| ||||||| | |||||||||||
Sbjct 1323 TTGTCCATTATGTTTTTGTTTCAA---GTTT-ATGTTTTGAGTGTCGCCTATTTTGTAAG 1378
Query 1341 GATTATGCTATGAATTCTGAAACTAATTCGAGTTATGA 1378
||||||||||||||||||||||||||||||||||||||
Sbjct 1379 GATTATGCTATGAATTCTGAAACTAATTCGAGTTATGA 1416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67871136840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5