BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470595
Length=1695
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05840.1 | Symbols: | Eukaryotic aspartyl protease family p... 2704 0.0
AT5G36260.1 | Symbols: | Eukaryotic aspartyl protease family p... 93.5 6e-18
> AT1G05840.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr1:1762734-1766281 REVERSE LENGTH=1698
Length=1698
Score = 2704 bits (1464), Expect = 0.0
Identities = 1628/1705 (95%), Gaps = 20/1705 (1%)
Strand=Plus/Plus
Query 1 AACAAACTCTGGAATTTCTGAACTT-C-C-TCGTCGTCGTCGT---CGCCGGTCCGGTGG 54
||||||||||| ||||||||||||| | | ||||||||||||| ||||||||||||||
Sbjct 4 AACAAACTCTGTAATTTCTGAACTTCCTCGTCGTCGTCGTCGTCGCCGCCGGTCCGGTGG 63
Query 55 TTTCTCTCAACTTCTCCGCCGAGACGACTGGCGCTATAAAAAACAGGCACGGGGGAAGAA 114
||||| |||||||||||||||||||||||| |||| |||| | |||||||| ||||||||
Sbjct 64 TTTCTTTCAACTTCTCCGCCGAGACGACTGACGCTGTAAACATCAGGCACGTGGGAAGAA 123
Query 115 GGAAGAAGATGACCTTCTCAATCGTCTCTTTCCCCATCTGCGCAAGGA-TCACGCTGATT 173
| ||||||||||| || |||||||| |||||||||||||||| || || |||||||||||
Sbjct 124 GAAAGAAGATGACTTTATCAATCGTATCTTTCCCCATCTGCGGAA-GATTCACGCTGATT 182
Query 174 TGGTTTCTCACTTCTCTTATTTCCGTATCTTCTAATCCCGGAGTCTTCAATGTTAAGTAC 233
|||||||||||| ||||| ||||||| |||| |||||||||||| |||||||| ||||||
Sbjct 183 TGGTTTCTCACTGCTCTTGTTTCCGTCTCTTGTAATCCCGGAGTGTTCAATGTAAAGTAC 242
Query 234 CGTTATCCACGGCTTCAAGGGTCTTTAAGCGCCTTAAAGGAGCATGATGACCGGCGTCAG 293
||||||||| ||||||||||||| || | ||||||||||||||| |||||||||||||||
Sbjct 243 CGTTATCCAAGGCTTCAAGGGTCCTTGACCGCCTTAAAGGAGCACGATGACCGGCGTCAG 302
Query 294 CTCACAATTCTCGCCGGAATCGATCTACCCCTTGGTGGAACTGGTCGTCCTGATATCCCC 353
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 303 CTCACAATTCTCGCTGGAATCGATCTACCCCTTGGTGGAACTGGTCGCCCTGATATCCCC 362
Query 354 GGGCTTTATTATGCAAAAATTGGAATTGGAACACCTGCTAAGAGCTATTATGTTCAAGTC 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 GGGCTTTATTATGCAAAAATTGGAATTGGAACACCTGCTAAGAGCTATTATGTTCAAGTC 422
Query 414 GACACAGGCAGTGATATTATGTGGGTTAACTGTATCCAGTGCAAACAATGTCCAAGACGA 473
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 423 GACACAGGGAGTGATATTATGTGGGTTAACTGCATCCAGTGCAAACAATGTCCAAGACGA 482
Query 474 AGCACTCTCGGTATTGAGCTTACACTCTACAACATTGACGAATCAGACAGTGGAAAGTTG 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 AGCACTCTCGGTATTGAGCTTACACTCTACAACATTGACGAATCAGACAGTGGAAAGTTG 542
Query 534 GTCTCTTGTGATGATGATTTTTGCTATCAGATTAGTGGTGGTCCTCTCTCAGGCTGCAAA 593
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 543 GTCTCTTGTGATGATGATTTTTGCTACCAGATTAGTGGTGGTCCTCTCTCTGGCTGCAAA 602
Query 594 GCTAATATGTCTTGTCCTTATCTTGAGATTTATGGAGATGGTAGCTCTACTGCTGGTTAT 653
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 603 GCTAATATGTCTTGTCCTTATCTTGAGATATATGGAGATGGTAGCTCTACTGCTGGTTAT 662
Query 654 TTTGTCAAAGATGTTGTGCAGTATGACAGTGTAGCTGGTGATCTCAAGACTCAAACAGCT 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 TTTGTCAAAGATGTTGTGCAGTATGACAGTGTAGCTGGTGATCTCAAGACTCAAACAGCT 722
Query 714 AATGGGAGTGTCATATTTGGGTGTGGTGCTAGGCAGTCAGGAGATCTAGACTCTTCTAAT 773
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 AATGGCAGTGTCATTTTTGGGTGTGGTGCTAGGCAGTCAGGAGATCTAGACTCTTCTAAT 782
Query 774 GAAGAAGCACTTGACGGAATACTTGGATTTGGGAAAGCTAATTCCTCCATGATTTCCCAG 833
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 783 GAAGAAGCACTTGACGGAATACTTGGATTTGGGAAAGCTAATTCTTCCATGATTTCCCAG 842
Query 834 CTGGCCTCATCAGGGAGAGTGAAAAAGATATTTGCTCATTGCTTAGATGGAAGAAATGGA 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 CTGGCCTCATCAGGGAGAGTGAAAAAGATATTTGCTCATTGCTTAGATGGAAGAAATGGA 902
Query 894 GGTGGTATATTTGCTATTGGGCGTGTTGTGCAACCAAAAGTAAACATGACACCATTGGTA 953
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 903 GGTGGTATATTTGCTATTGGACGTGTTGTGCAACCAAAAGTAAACATGACACCATTGGTA 962
Query 954 CCCAATCAACCACATTACAATGTCAATATGACAGCAGTTCAAGTTGGTCAGGAGTTCCTA 1013
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 963 CCCAATCAACCACATTACAATGTCAATATGACAGCAGTTCAAGTTGGTCAGGAGTTTCTA 1022
Query 1014 AATATCCCAGCGGATTTATTTCAGCCTGGAGATAGAAAAGGAGCGATAATTGACAGTGGT 1073
| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1023 ACTATCCCAGCCGATTTATTTCAACCTGGAGATAGAAAAGGAGCGATAATTGACAGTGGT 1082
Query 1074 ACAACCTTGGCCTATCTTCCAGAGATAATCTATGAACCATTGGTGAAGAAGATAACCTCG 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 ACAACCTTGGCCTATCTTCCAGAGATAATCTATGAACCATTGGTGAAGAAGATAACCTCG 1142
Query 1134 CAGGAGCCTGCTCTGAAAGTTCACATAGTGGATAAAGATTATAAATGCTTTCAGTACTCT 1193
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 CAGGAGCCTGCTCTAAAAGTTCACATAGTGGATAAAGATTATAAATGCTTTCAGTACTCT 1202
Query 1194 GGAAGAGTTGATGAGGGGTTTCCGAATGTCACTTTCCATTTCGAGAACTCGGTATTCCTC 1253
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1203 GGCAGAGTTGATGAGGGGTTTCCGAATGTCACTTTCCATTTCGAGAACTCGGTTTTCCTC 1262
Query 1254 AGGGTTTATCCTCATGACTATTTGTTCCCTTATGAAGGAATGTGGTGCATTGGTTGGCAA 1313
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1263 AGGGTTTATCCTCATGACTATCTGTTCCCTCATGAAGGAATGTGGTGCATTGGTTGGCAA 1322
Query 1314 AATAGCGCAATGCAATCCAGGGATAGGAGAAACATGACACTTTTGGGAGATTTGGTGCTT 1373
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1323 AATAGCGCAATGCAATCCAGAGATAGGAGAAACATGACACTTTTGGGAGATTTGGTGCTT 1382
Query 1374 TCAAACAAACTTGTTCTCTACGATCTCGAAAATCAGCTCATTGGATGGACCGAGTACAAC 1433
|||||||| ||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 1383 TCAAACAAGCTTGTTCTCTACGATCTCGAAAATCAGCTCATTGGGTGGACTGAATACAAC 1442
Query 1434 TGCTCATCAAGCATAAAAGTAAAAGACGAAGGCACAGGAACAGTTCATCTAGTAGGCTCA 1493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1443 TGCTCATCAAGCATAAAAGTAAAAGACGAAGGCACAGGAACAGTTCATCTAGTAGGCTCA 1502
Query 1494 CATTTTATCTCTTCTGCATTACCTTTGGATACCTGTCTGT-T-T-CTACTTTCTGTACTT 1550
|||||||||||||||||||||||||||||||||| | ||| | | ||| ||||| |||||
Sbjct 1503 CATTTTATCTCTTCTGCATTACCTTTGGATACCTCTATGTGTCTTCTATTTTCTTTACTT 1562
Query 1551 CTCCTCATGACTATGTTCCTCCTTTAGAGACTCCTTATAGTTTATCTTTTGTACATAGAT 1610
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1563 CTCCTCATGACTCTTTTCCTCCTTTAGAGACTCCTTATAGTTTATCTTTTGTACATAGAT 1622
Query 1611 TCAACATTTTGCTAAAATGGTaaaaaaaaaaaaaaaaGGTCTGATATATATAGATAATAC 1670
|||||||||||||||||||||||| ||||| ||||||||||||| ||||||||
Sbjct 1623 TCAACATTTTGCTAAAATGGTAAAGAAAAA-------GGTCTGATATATA--GATAATAC 1673
Query 1671 AAAGAAAACCAGCAGATTGATGATG 1695
|||||| |||||||||||||||||
Sbjct 1674 GAAGAAACCCAGCAGATTGATGATG 1698
> AT5G36260.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr5:14284955-14288333 REVERSE LENGTH=1716
Length=1716
Score = 93.5 bits (50), Expect = 6e-18
Identities = 89/108 (82%), Gaps = 2/108 (2%)
Strand=Plus/Plus
Query 1353 CTTTTGGGAGATTTGGTGCTTTCAAACAAACTT-GTTCTCTACGATCTCGAAAATCAGCT 1411
||||||||||||||||||||||||||||| || || | |||||| | || ||| || |
Sbjct 1370 CTTTTGGGAGATTTGGTGCTTTCAAACAAG-TTAGTAGTATACGATTTGGAGAATGAGGT 1428
Query 1412 CATTGGATGGACCGAGTACAACTGCTCATCAAGCATAAAAGTAAAAGA 1459
|||||||||| | || ||||||| || |||||||| ||||| |||||
Sbjct 1429 CATTGGATGGGCTGACCACAACTGTTCGTCAAGCATCAAAGTCAAAGA 1476
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83784709605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5