BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470596
Length=1393
Score E
Sequences producing significant alignments: (Bits) Value
AT1G05850.1 | Symbols: POM1, ERH2, ELP1, CTL1, ELP, HOT2, ATCTL... 2045 0.0
> AT1G05850.1 | Symbols: POM1, ERH2, ELP1, CTL1, ELP, HOT2, ATCTL1
| Chitinase family protein | chr1:1766503-1768695 REVERSE
LENGTH=1478
Length=1478
Score = 2045 bits (1107), Expect = 0.0
Identities = 1307/1397 (94%), Gaps = 40/1397 (3%)
Strand=Plus/Plus
Query 1 GTTTAGTGTTTCTTCTTCCT--TGTCTCTCCCGAGAA--TC-T-CTTATTTTCTCGGCAA 54
|||||||||||||||||||| | ||| |||| |||| || | ||||||||||||||||
Sbjct 1 GTTTAGTGTTTCTTCTTCCTCCTCTCTTTCCCAAGAATCTCTTCCTTATTTTCTCGGCAA 60
Query 55 CGAAGCAAAAAGGGTAGTTTTTGTCGGTTGAA-TCACAAACTAATTTTCTCGATCTCTCT 113
|||||||||||||||| ||||||||||||||| |||||| ||| ||||||||||||||||
Sbjct 61 CGAAGCAAAAAGGGTAATTTTTGTCGGTTGAATTCACAAGCTAGTTTTCTCGATCTCTCT 120
Query 114 CTGGATCTGTAGCTGATCTGCATTGCGGCTTGTAGCTGGTATTTGTTCCATAGTTGTAAG 173
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTGGATCTATAGCTGATCTGCATTGCGGCTTGTAGCTGGTATTTGTTCCATAGTTGTAAG 180
Query 174 ATATGGTGACCATCCGGAGTGGTTCGATCGTGATTCTGGTTCTGCTGGCTGTATCATTCC 233
||||||||| ||| |||||||||| ||||||||| |||||||||||||||||||||| |
Sbjct 181 CTATGGTGACAATCAGGAGTGGTTCAATCGTGATTTTGGTTCTGCTGGCTGTATCATTTC 240
Query 234 TGGCCTTGGTTGCAAATGGAGAGGACAAAACGATTAAAGTGAAGAAAGTGAGGGGAGAGA 293
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 241 TGGCCTTGGTTGCCAATGGAGAGGACAAAACGATTAAAGTGAAGAAAGTGAGGGGAAATA 300
Query 294 GGGTGTGCACACAGGGATGGGAATGCAGCTGGTGGTCTAAATACTGCTGTAACCAGACGA 353
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGGTGTGCACGCAAGGATGGGAATGCAGCTGGTGGTCTAAATACTGCTGTAACCAGACGA 360
Query 354 TATCAGATTACTTTCAGGTTTATCAGTTTGAGCAACTCTTTTCCAAAAGGAACACTCCCA 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TATCAGATTACTTTCAGGTTTATCAGTTTGAGCAACTCTTTTCCAAAAGGAACACTCCCA 420
Query 414 TTGCTCACGCTGTTGGTTTCTGGGACTACCAGTCCTTCATTACTGCTGCTGCCCTCTATG 473
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 421 TTGCTCATGCTGTTGGTTTCTGGGACTACCAGTCTTTCATTACTGCTGCTGCCCTCTTTG 480
Query 474 AGCCTCTTGGGTTTGGTACCACTGGAGGAAAGCTCCA-GGGACAGAAAGAAATGGCTGCC 532
|||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 481 AGCCTCTTGGTTTTGGTACCACTGGAGGAAAGCTC-ATGGGACAGAAAGAAATGGCTGCC 539
Query 533 TTTCTCGGTCATGTTGCCAGCAAAACGTCCTGTGGCTATGGAGTCGCAACAGGAGGGCCT 592
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 540 TTTCTCGGTCATGTAGCCAGCAAAACGTCCTGTGGCTATGGAGTTGCAACAGGAGGGCCT 599
Query 593 TTAGCTTGGGGTCTGTGCTATAACAGGGAAATGAGCCCAATGCAATCCTACTGTGACGAG 652
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTAGCTTGGGGTCTGTGCTACAACAGGGAAATGAGCCCAATGCAATCCTACTGTGACGAG 659
Query 653 TCCTGGAAATTCAAGTACCCTTGCAGTCCTGGAGCTGAATACTACGGACGTGGGGCCTTA 712
|||||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||
Sbjct 660 TCCTGGAAATTCAAGTACCCCTGCAGCCCTGGAGCTGAATACTACGGACGCGGTGCCTTA 719
Query 713 CCCATTTACTGGAACTTCAACTACGGTGCAGCTGGGGAAGCCCTGAAAGCTGATCTCTTG 772
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 720 CCCATTTACTGGAACTTCAACTACGGAGCAGCTGGGGAAGCCCTGAAAGCTGATCTCTTG 779
Query 773 AACCACCCCGAGTACATCGAGCAGAACGCGACACTTGCATTCCAAGCTGCAATCTGGAGA 832
|||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 780 AACCACCCTGAGTACATTGAGCAAAACGCGACACTTGCATTCCAAGCTGCAATCTGGAGA 839
Query 833 TGGATGACTCCAATCAAGAGATTTCAGCCCTCAGCCCACGACATCTTTGTCGGAAACTGG 892
||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 840 TGGATGACTCCAATCAAGAGAGCTCAGCCCTCAGCTCACGACATCTTTGTCGGAAACTGG 899
Query 893 AAACCTACAAAGAACGACACTTTGTCCAAGCGTGGCCCAACTTTCGGCAGCACCATGAAC 952
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 900 AAACCTACAAAGAACGACACTTTGTCCAAGCGTGGCCCGACTTTTGGCAGCACCATGAAC 959
Query 953 GTCCTCTACGGAGAGTACACATGTGGCCAAGGTTCCATTGATCCAATGAACAACATAATC 1012
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 960 GTCCTCTACGGAGAGTACACATGTGGTCAAGGTTCCATTGATCCAATGAACAACATAATC 1019
Query 1013 TCACACTACTTATACTTCCTCGACCTCTTGGGTATTGGAAGAGAAGACGCCGGG-CCAAA 1071
|||||||||||||||||||| |||||| |||||||||||||||||||||| ||| |||||
Sbjct 1020 TCACACTACTTATACTTCCTTGACCTCATGGGTATTGGAAGAGAAGACGC-GGGACCAAA 1078
Query 1072 CGAGGAGCTGAGTTGCGCAGAACAGAAACCTTTCAACCCTTCAACTGTAGCTTCCTCTTC 1131
||| ||||| || |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1079 CGATGAGCTCAGCTGCGCAGAACAGAAACCTTTCAACCCTTCAACTGTACCTTCCTCTTC 1138
Query 1132 CTCTTCGTAAGTCTTATGATGTATCGCCATTGCTCTCAAGTCTCTCTTGCTTCGCCGAAG 1191
|||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||
Sbjct 1139 CTCTTCGTAAGTCTTATGATATATCGCCGTTGCTCTCAAGTCTCTCTTGCTT-----AA- 1192
Query 1192 AAATGTTACGTAATAAGTGAAATTGCTTGTGGTAAAAAA--------T-T-TT---GTCC 1238
|||||||||||||||||||||||||||||||||||| | | || ||||
Sbjct 1193 ---TGTTACGTAATAAGTGAAATTGCTTGTGGTAAAAAAAGAAGAAGTGTGTTTTTGTCC 1249
Query 1239 CTCTAGAACTTATAATGCAAACAA-A--A--TTT-ATATTTTTCTGTATGTAAAACCATA 1292
|||||||||||||||||||||||| | | ||| |||||||||||||||||||||||||
Sbjct 1250 CTCTAGAACTTATAATGCAAACAACATTACATTTTATATTTTTCTGTATGTAAAACCATA 1309
Query 1293 TTTAATTATTGTATTTGAAGAATGTGTGTAAAATAGAGAAA-AGCGAGGAAACATAAATG 1351
||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1310 TTTAATTATTGTATTGGAAGAATGTGTGTAAAATAGAGAAAGAGCAAGGAAACATAAATG 1369
Query 1352 TGGTTTGCGAATGATAT 1368
|||||||||||||||||
Sbjct 1370 TGGTTTGCGAATGATAT 1386
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68624145015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5