BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470598 Length=1153 Score E Sequences producing significant alignments: (Bits) Value AT1G05870.1 | Symbols: | Protein of unknown function (DUF1685)... 885 0.0 AT2G31560.1 | Symbols: | Protein of unknown function (DUF1685)... 346 3e-94 AT3G22690.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein o... 122 5e-27 > AT1G05870.1 | Symbols: | Protein of unknown function (DUF1685) | chr1:1772211-1773293 REVERSE LENGTH=878 Length=878 Score = 885 bits (479), Expect = 0.0 Identities = 649/723 (90%), Gaps = 44/723 (6%) Strand=Plus/Plus Query 1 ATGGGTTGTGCTCGCTGCAAATCATCAGATCCATGGCAAACATCTGCCAGTGCCTTGGAA 60 |||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 66 ATGGGTTGTGTTCGCTGCAAATCATCAGATCCATGGCAAACATCTGCCAATGCCTT---T 122 Query 61 GAAGACGTCGATGAATCTGGAATCAACGAAGCCTGGGTTGAGATCTCTAACCGCAGATCA 120 ||| |||||||||||| ||||||||||||||||||||||||||||| | |||||||||| Sbjct 123 GAATCCGTCGATGAATCCGGAATCAACGAAGCCTGGGTTGAGATCTCCAGCCGCAGATCA 182 Query 121 TTTGTCTCCGGCGAAGGTAGTAGTCGGAAGAAGCTGGAGAGGAAGAAGAGCCAAGTGTTA 180 |||||| |||||||| | |||||||||||||||| |||||||||||||||||||||||| Sbjct 183 TTTGTCGCCGGCGAA-G--GTAGTCGGAAGAAGCTAGAGAGGAAGAAGAGCCAAGTGTTA 239 Query 181 CTGGAAGGTTACGTTGAGACTG------C-TGCT--GTGGATGATCAAAAAGACGATCTG 231 |||||||||||||||||||||| | | || |||||||||||||| ||||||||| Sbjct 240 CTGGAAGGTTACGTTGAGACTGCTTCTTCTTCCTCGGTGGATGATCAAAAGGACGATCTG 299 Query 232 ACGAGATCCAAGAGTTTGACGGATGACGATCTCGAAGATCTCAAAGGTTGTTTAGATCTA 291 ||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||| Sbjct 300 ACGAGATCCAAGAGTTTGACGGATGACGACCTCGAAGATCTTAGAGGTTGTTTAGATCTA 359 Query 292 GGGTTTGGTTTCAGCTACGACGAGATCCCTGAGCTCTGCAACACTTTACCTGCTTTGGAG 351 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 GGGTTTGGTTTTAGCTACGACGAGATCCCTGAGCTCTGCAACACTTTACCTGCTTTGGAG 419 Query 352 CTTTGCTATTCAATGAGCCAGAAGTTCTTAGACGATAAGCA---TAAATCACCGGAAAGT 408 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 420 CTTTGCTATTCAATGAGCCAGAAGTTCTTAGACGATAAGCAAAATAAATCACCGGAAACT 479 Query 409 TCGTCGGTGGAAGATTCTCCGTCGCCTCCACCTG-TCACCTCCACTCCCATTGCCAATTG 467 |||||||||||||||| |||||||||||||| || ||||| ||||||| ||||||||||| Sbjct 480 TCGTCGGTGGAAGATTGTCCGTCGCCTCCAC-TGGTCACCGCCACTCCGATTGCCAATTG 538 Query 468 GAAGATCTCTAGTCCCGGTGATAATCCGGATGATGTGAAAGCTAGGCTCAAATACTGGGC 527 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 GAAGATCTCTAGTCCCGGTGATAATCCGGATGATGTGAAAGCTAGGCTCAAATACTGGGC 598 Query 528 ACAAGCCGTTGCCTGTACTGTCCAATTGTGCAGCTGAATGAATCATTGTCACTTCTCAAC 587 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 599 ACAAGCCGTTGCCTGTACTGTCCAATTGTGCAGCTGAATGAATCATTGTCACGTCTGAAC 658 Query 588 CA--A-TAACT--C-AA--A-CATTGT-T-A-GC-TA--T-G-GG-GGAG-A--TCTCAG 626 || | || || | || | || | | | | || | | | || |||| | | |||| Sbjct 659 CAGGAATA-CTAGCGAATGAGCAATATCTCAAGCATTGGTAGCGGAGGAGGAGATTTCAG 717 Query 627 AAAG-G-CATTGGAAGGTCTGAAATTTAACTGAATATCAACAATGATTCTCACTTGATTC 684 |||| | ||||||||||||| ||||| |||||||||||||||||| ||||||||| |||| Sbjct 718 AAAGTGGCATTGGAAGGTCTAAAATTGAACTGAATATCAACAATGGTTCTCACTTAATTC 777 Query 685 CAT 687 ||| Sbjct 778 CAT 780 > AT2G31560.1 | Symbols: | Protein of unknown function (DUF1685) | chr2:13436557-13438011 FORWARD LENGTH=1169 Length=1169 Score = 346 bits (187), Expect = 3e-94 Identities = 371/456 (81%), Gaps = 28/456 (6%) Strand=Plus/Plus Query 142 AGTCGGAAGAAGCTGGAGAGGAAGAAGAGCCAAGTGTTACTGGAAGGTTACGTTGAGACT 201 ||| ||||||||||||||| |||||||||||||||||| || | | | | || || Sbjct 256 AGTAGGAAGAAGCTGGAGAAGAAGAAGAGCCAAGTGTTGCTTG-A-G----G--GATAC- 306 Query 202 GCTGCTGTGGATGATCAAAAAGACGATCTGACGAGATCCAAGAGTTTGACGGATGACGAT 261 || | | ||||||||| |||| ||| |||||||| ||||||||||||||||||| ||| Sbjct 307 GC-G-T-TGGATGATC---AAGATGATTTGACGAGAGCCAAGAGTTTGACGGATGATGAT 360 Query 262 CTCGAAGATCTCAAAGGTTGTTTAGATCTAGGGTTTGGTTTCAGCTACGACGAGATCCCT 321 || || || || ||||||||||||||||||||||||||||| || ||||| ||||||||| Sbjct 361 CTTGAGGAGCTTAAAGGTTGTTTAGATCTAGGGTTTGGTTTTAGTTACGATGAGATCCCT 420 Query 322 GAGCTCTGCAACACTTTACCTGCTTTGGAGCTTTGCTATTCAATGAGCCAGAAGTTCTTA 381 ||||| ||||||||||| ||||| || |||||||| || || |||||||||||||||||| Sbjct 421 GAGCTTTGCAACACTTTGCCTGCGTTAGAGCTTTGTTACTCCATGAGCCAGAAGTTCTTA 480 Query 382 GACGATAAGCAT-AAATC-ACCGGAAAGTTCGTCGGTGGAAGATTCTCCGTCGCCTCCAC 439 || |||||||| ||| | ||| || || | || ||||||| | ||||||| |||| Sbjct 481 GATGATAAGCAACAAAACCACCACAA-GTCCCA-GGAGGAAGATGATTCGTCGCCACCAC 538 Query 440 CTGTC-ACCTCCACTCCCATTGCCAATTGGAAGATCTCTAGTCCC-GGTGATAATCCGGA 497 | | | || || |||| ||||| ||||||||||||||||| ||| |||||| |||| || Sbjct 539 C-GACCACGACCGCTCCAATTGCAAATTGGAAGATCTCTAG-CCCTGGTGATGATCCAGA 596 Query 498 TGATGTGAAAGCTAGGCTCAAATACTGGGCACAAGCCGTTGCCTGTACTGTCCAATTGTG 557 |||||| |||||||| |||||||| ||||||||| | ||||| || || || | ||||| Sbjct 597 TGATGTAAAAGCTAGACTCAAATATTGGGCACAAACTGTTGCTTGCACCGTACGGTTGTG 656 Query 558 CAGCTGAA-T-GAATC-ATTGTCA-CTTCTCAACCA 589 |||||||| | ||||| ||| ||| ||| | ||||| Sbjct 657 CAGCTGAACTAGAATCGATTTTCATCTT-TGAACCA 691 > AT3G22690.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 49784 Blast hits to 14716 proteins in 280 species: Archae - 2; Bacteria - 10; Metazoa - 107; Fungi - 167; Plants - 48594; Viruses - 0; Other Eukaryotes - 904 (source: NCBI BLink). | chr3:8021229-8024534 REVERSE LENGTH=2935 Length=2935 Score = 122 bits (66), Expect = 5e-27 Identities = 82/89 (92%), Gaps = 4/89 (4%) Strand=Plus/Plus Query 450 CACTCCCATTGCCAATTGGAAGATCTCTAGT-CC--CG-GTGATAATCCGGATGATGTGA 505 |||||| |||||||||||||||||||||||| || || ||||||||||||||||||||| Sbjct 2681 CACTCCAATTGCCAATTGGAAGATCTCTAGTCCCGTCGTGTGATAATCCGGATGATGTGA 2740 Query 506 AAGCTAGGCTCAAATACTGGGCACAAGCC 534 ||||||| ||||||| ||||||||||||| Sbjct 2741 AAGCTAGACTCAAATGCTGGGCACAAGCC 2769 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56576014215 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5