BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470616
Length=1094
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06040.1 | Symbols: STO | B-box zinc finger family protein |... 1365 0.0
AT2G31380.1 | Symbols: STH | salt tolerance homologue | chr2:13... 342 4e-93
> AT1G06040.1 | Symbols: STO | B-box zinc finger family protein
| chr1:1828413-1829890 REVERSE LENGTH=1227
Length=1227
Score = 1365 bits (739), Expect = 0.0
Identities = 914/994 (92%), Gaps = 29/994 (3%)
Strand=Plus/Plus
Query 120 TTCTTGACAAAACTTGATTTTTTGGTTTCTTGTATACGGACGGTGATGAAGATACAGTGT 179
||||||| ||| || ||| |||||||||||||||| | ||||||||||||||||||||
Sbjct 191 TTCTTGAGAAACCTAGATATTTTGGTTTCTTGTAT-C---CGGTGATGAAGATACAGTGT 246
Query 180 GATGTGTGTGAGAAAGCTCCGGCGACGGTGATATGTTGTGCCGACGAAGCTGCTCTCTGT 239
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 247 GATGTGTGTGAGAAAGCTCCGGCGACGGTGATTTGTTGCGCCGACGAAGCTGCTCTCTGT 306
Query 240 CCTCACTGCGACGTCGAGATTCATGCCGCTAACAAACTCGCTAGCAAGCACCAACGTCTT 299
||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 307 CCTCAATGCGACATCGAGATTCACGCCGCTAACAAACTCGCTAGCAAGCACCAACGTCTT 366
Query 300 CATCTTAATTCTCTCTCCACCGAATTCCCTCGTTGCGATATCTGCCAAGAGAAGGCAGCT 359
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 367 CATCTTAATTCCCTCTCCACCAAATTCCCTCGTTGCGATATCTGCCAAGAGAAGGCAGCT 426
Query 360 TTCATTTTCTGTGTAGAGGATAGAGCTCTGCTTTGCAGGGACTGCGATGAATCCATCCAC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 TTCATTTTCTGTGTAGAGGATAGAGCTCTGCTTTGCAGGGACTGCGATGAATCCATCCAC 486
Query 420 GTTGCTAATTCTCGATCTGCTAATCACCAGAGGTTCTTAGCCACTGGGATCAAAGTAGCT 479
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 GTGGCTAATTCTCGATCTGCTAATCACCAGAGGTTCTTAGCCACTGGGATCAAAGTAGCT 546
Query 480 CTGACCTCAACGAGCTGCAATAAAGAAATGGAGAAGAACCAACCTGAGCCTTCCAACAAC 539
||||||||||| | || | ||||||||| |||||||| |||||||||||||||||||||
Sbjct 547 CTGACCTCAACTATATGTAGTAAAGAAATTGAGAAGAATCAACCTGAGCCTTCCAACAAC 606
Query 540 CAACAAAAACCTAATCAGATTCCGGCTAAATCCCCAAGCCAGCAG---CAACAACCTTCT 596
||||| || ||||||||||||| ||||||||| ||||||||||| ||||||||||||
Sbjct 607 CAACAGAAGGCTAATCAGATTCCTGCTAAATCCACAAGCCAGCAGCAACAACAACCTTCT 666
Query 597 TCAGCTACTCCGCTTCCGTGGGCTGTTGACGATTTCTTCCACTTCTCCGATATCGAATCC 656
|| |||||||| ||||| |||||||||||||||||||| |||||||| ||||| ||||||
Sbjct 667 TCTGCTACTCCACTTCCCTGGGCTGTTGACGATTTCTTTCACTTCTCTGATATTGAATCC 726
Query 657 ACTGATC-AGAAAGGGCAGCTTGATCTCGGGGCAGGGGAGTTGGATTGGTTTTCAGACAT 715
|| || | ||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 727 ACCGA-CAAGAAAGGACAGCTTGATCTTGGGGCAGGGGAGTTGGATTGGTTTTCAGACAT 785
Query 716 GGGATTCTTCGGTGATCAAATTAATCACAAGGCTCTTCCTGCAGCTGAAGTTCCTGAGCT 775
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 786 GGGATTCTTCGGTGATCAGATTAATGACAAGGCTCTTCCTGCAGCTGAAGTTCCTGAGCT 845
Query 776 TTCTGTTTCGCATTTAGGTCATGTTCATTCATACAAACCCATGAAGTCGAATGTTTC-CT 834
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 846 TTCTGTTTCGCATTTAGGTCATGTTCATTCATACAAACCTATGAAGTCAAATGTTTCAC- 904
Query 835 ACAAGAAGCCGAGGTACGAGATCAGAgatgatgatgatgatgaGGAGCACTTTATTGTCC 894
||||||||||||||| |||| |||| ||||||||||||||||||| ||||| |||||||
Sbjct 905 ACAAGAAGCCGAGGTTTGAGACCAGATATGATGATGATGATGAGGAACACTTCATTGTCC 964
Query 895 CTGATCTTGGCTAAAAAGCTATATGTAAGCTATATGTGTAGACATTCTTCAATGTAAAAG 954
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 965 CTGATCTTGGCTAAAAAGCTATATGTAATCTAT--GTGTAGACATTCTTCAATGTAAAAG 1022
Query 955 AA-------GAAAC--A-----ATGTGTGGAGTCAATGTCATATACTTTTTTAGTTTTGT 1000
|| ||||| | ||||||||||| |||||||||||| |||| ||||||||
Sbjct 1023 AACAAACAAGAAACCTATCTGCATGTGTGGAGTTAATGTCATATACATTTT-AGTTTTGT 1081
Query 1001 CATAAGGTGTGTAAGATATGTTGAGAGCTTATCATAAATGTCTGTGTGTTGAGTTTTGTT 1060
| |||| ||||||||||||||||||||||||| | |||||||||||| ||||||||||||
Sbjct 1082 CTTAAGTTGTGTAAGATATGTTGAGAGCTTATAACAAATGTCTGTGT-TTGAGTTTTGTT 1140
Query 1061 CATACCTCTTGAACATGGTATATGCTTAATGCTT 1094
||||||||||||||||||| ||||||||||||||
Sbjct 1141 CATACCTCTTGAACATGGTCTATGCTTAATGCTT 1174
> AT2G31380.1 | Symbols: STH | salt tolerance homologue | chr2:13381910-13383470
FORWARD LENGTH=1125
Length=1125
Score = 342 bits (185), Expect = 4e-93
Identities = 581/763 (76%), Gaps = 63/763 (8%)
Strand=Plus/Plus
Query 165 ATGAAGATACAGTGTGATGTGTGTGAGAAAGCTCCGGCGACGGTGATATGTTGTGCCGAC 224
||||||||||| |||||||||||||||||||||||||| ||| | ||||||||||| ||
Sbjct 241 ATGAAGATACAATGTGATGTGTGTGAGAAAGCTCCGGCCACGCTTATATGTTGTGCTGAT 300
Query 225 GAAGCTGCTCTCTGTC-CTCACTGCGACGTCGAGATTCATGCCGCTAACAAACTCGCTAG 283
|||||||||||||| | || | || ||||| ||| ||||||| ||||| |||||||||||
Sbjct 301 GAAGCTGCTCTCTG-CGCTAAATGTGACGTTGAGGTTCATGCTGCTAATAAACTCGCTAG 359
Query 284 CAAGCACCAACGTCTTCATCTTAATTCTCTCTCCACCGAATTCCCTCGTTGCGATATCTG 343
||| |||||||| ||| |||| | |||||||| || ||||||||| ||||| |||||
Sbjct 360 CAAACACCAACGCCTTTTTCTTGACTCTCTCTCAACTAAATTCCCTCCCTGCGACATCTG 419
Query 344 CCAAGAGAAGGCAGCTTTCATTTTCTGTGTAGAGGATAGAGCTCTGCTTTGCAGGGACTG 403
|| ||||||||||||||||| ||||||||||||||||| |||||||| ||||| || ||
Sbjct 420 CCTTGAGAAGGCAGCTTTCATATTCTGTGTAGAGGATAGGGCTCTGCTCTGCAGAGATTG 479
Query 404 CGATGAATCCATCCACGTTG-CTAATTCTCGATCTGCTAATCACCAGAGGTTCTTAGCCA 462
|||||| | | ||| | | | ||| |||| ||||||||||||||||||||||||||||
Sbjct 480 CGATGAGGCGACCCATG-CGCCAAATACTCGCTCTGCTAATCACCAGAGGTTCTTAGCCA 538
Query 463 CTGGGATCAAAGTAGCTCTGACCTCAACGAGCTGCAATAAAGAAATGGAGAAGAACCAAC 522
|||| ||| ||| ||||| | || || || |||||| ||||| |||| ||||| || |
Sbjct 539 CTGGAATCCGAGTTGCTCTTAGTTCCACTAGTTGCAATCAAGAAGTGGAAAAGAATCA-C 597
Query 523 CTGAGCCTTCCAACAACCAACAAAAACCTAATCAGATTC-CGGCTAAATCC-CCAAGCCA 580
| || | | ||| | || | | |||| || | ||||| || |||| |
Sbjct 598 -T-----TTG-A-C--CCATCTAAT-C--AG-CAGAGTCTCT-CTAAA-CCGCCAA-CT- 639
Query 581 GCAGCAACAAC-CTTCTTCAGCTACTCCGCTTCCGTGGGCTGTTGACGATTTCTTCCA-C 638
||||||| | || || || | |||| || ||||||| || || |||||| | |
Sbjct 640 -CAGCAACC-CGCTGCTCCA--T-CTCCT-TT--GTGGGCTACCGATGAATTCTTC-AGC 690
Query 639 TTCTCCGATATCGAATCCACTGATCAG-A-AAGG-GCAGCTTGATCTCGGGGCAGGGGAG 695
| ||| ||| | || | || | || || | || | ||| || |||||||||| ||
Sbjct 691 TACTCTGATCTTGACTGCAGTAATAAGGAGAAAGAGCAACTCGATCTCGGGG-AGC---- 745
Query 696 TTGGATTGGTTTTCAGACATGGGAT-TCTTCGGTGATCAAATTAATCACA-AGGCTCTTC 753
| ||||||| || |||| ||||| | | || ||||| || | |||| | ||||||| |
Sbjct 746 T-GGATTGGCTTGCAGAGATGGG-TCTGTTTGGTGACCAGCCTGATCA-AGAGGCTCTAC 802
Query 754 CTGCAGCTGAAGTTCCTGAGCTTTC-TGTTTCGCATTTAGG-TCATGTTCATTCATACAA 811
| | ||| |||||||| |||||||| | |||| ||||| || ||||| |||||| |||||
Sbjct 803 CGGTAGCCGAAGTTCCCGAGCTTTCCT-TTTCACATTT-GGCTCATGCTCATTCCTACAA 860
Query 812 -AC-CC-ATGAAGTCGAATGTTTCCTACAAGAAGCCGAGG-TACGAG-ATCAGAgatgat 866
| || |||||||| ||||| || ||||||||| |||| | ||| | | | | | ||
Sbjct 861 CAGACCTATGAAGTCCAATGTACCCAACAAGAAGCAGAGGCTT-GAGTACC-G-G-T-AT 915
Query 867 gatgatgatgaGGAGCACTTTATTGTCCCTGATCTTGGCTAAA 909
|||||||| || |||||||| | ||||| || || |||||||
Sbjct 916 GATGATGAAGAAGAGCACTTCCTAGTCCCCGACCTAGGCTAAA 958
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53614182060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5