BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470624
Length=1533
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06110.1 | Symbols: SKIP16 | SKP1/ASK-interacting protein 16... 2335 0.0
> AT1G06110.1 | Symbols: SKIP16 | SKP1/ASK-interacting protein
16 | chr1:1853077-1855031 REVERSE LENGTH=1564
Length=1564
Score = 2335 bits (1264), Expect = 0.0
Identities = 1456/1547 (94%), Gaps = 19/1547 (1%)
Strand=Plus/Plus
Query 1 GAACTGAATCAGAGACGACAAAAGCAACC--GAG--AGAAAGCGAAGAAGTGTCGTTGTC 56
|||||||| ||||| |||||||||||||| ||| |||||||||| ||| || ||||||
Sbjct 18 GAACTGAAACAGAGCCGACAAAAGCAACCGAGAGAAAGAAAGCGAACAAGGGTTGTTGTC 77
Query 57 T--GA-GACGAAAGCTTTGGGGCTAGAAGATGCTGGAGATTTGATTCTCCACATCGTATT 113
| || |||||||||| |||| ||||| ||||||||||||||| ||||||||||||| ||
Sbjct 78 TGAGACGACGAAAGCTATGGGTCTAGAGGATGCTGGAGATTTGGTTCTCCACATCGTCTT 137
Query 114 ATCCAAAATCGGCCCTGAAAGCACCGCGAGAGTGGCTTGTGTCAGTAAACGCCTTAAGGT 173
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 138 ATCCAAAATCGGCCCTGAAAACACCGCGAGAGTGGCTTGTGTCAGTAAACGCCTTAAGGT 197
Query 174 TTCCGCCTCCGAGGAATCTCTCTGGTCGATCTTCTGCTCCAATGATCTTAATATCTCTAC 233
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 198 CTCCGCCTCCGAGGAATCTCTCTGGTCTATCTTCTGCTCCAATGATCTTAATATCTCTAC 257
Query 234 TCCCCTCGATCCCCATGGAGATCCTGCTCCTTCCTTCAAGAGAGCATATCAATTGTGGAG 293
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 258 TCCTCTCGATCCCCATGGAGATCCTGCTCCTTCCTTCAAGAGAGCATATCAATTGTGGAG 317
Query 294 GGAGTCATTTAGAATGTATCCTTGGAATCTCGTTAAGCGCGTTAGACTTTGTTGGGACAA 353
|||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||
Sbjct 318 GGAGTCATTTAGAATGTATCCTTGGAATCTGGTTAAAAGAGTTAGACTTTGTTGGGACAA 377
Query 354 GCTCAAACTATGGTTGAGCCT-AAACTTCCCTGAAGCAAAGGCAACTCTGAGGAAAGGTG 412
||||||| |||||||| ||| |||||||||||||||||||||||| |||||||||||||
Sbjct 378 CCTCAAACAATGGTTGA-CCTTAAACTTCCCTGAAGCAAAGGCAACACTGAGGAAAGGTG 436
Query 413 -CTACAGAAGATGATCTTCAAGAATTGGAGACTTGTCTCAAAGTGAAACTTCCTCTT-CC 470
| ||||||||||||||||||||||| ||||||| ||||||||||||||||||| || ||
Sbjct 437 TC-ACAGAAGATGATCTTCAAGAATTCGAGACTTCTCTCAAAGTGAAACTTCCT-TTGCC 494
Query 471 CACTAGGCTTCTCTACCGTTTCGTTGATGGTCAAGAGCTTTCTTCCTCCAATGGGCTTGA 530
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 495 CACAAGGCTTCTCTACCGTTTCGTTGATGGTCAAGAGCTTTCTTCCCCCAATGGGCTTGA 554
Query 531 TGGCTCTTTGGGGCTTATAGGTGGCTATTCTGCTTACTCTCATGACGTTAATGTCTACTT 590
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 555 TGGCTCTTTGGGGCTTATAGGTGGCTATTCCGCTTATTCTCATGACGTTAATGTCTACTT 614
Query 591 GCTACCTCTTAAAGAAGTCATTAGGGAGACAAAGGAAAC---CATGCTCCACCTCGGTTT 647
|||||||||||| ||||| || |||||||||||||||| ||||| | ||||||||||
Sbjct 615 GCTACCTCTTAAGGAAGTGATGAGGGAGACAAAGGAAAGTTTCATGCGCGACCTCGGTTT 674
Query 648 CTCCACCAGATTAAACCTTATCGTTATGGCTGCATCCGTAGTTGCCAGTCTGAAAATCTT 707
||| | |||||| ||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 675 CTCGAGTAGATTAGACCTTATTGTTATGGCTGCATCCGTAGTTGCCAGTCTGAAAATATT 734
Query 708 TTTATTAGACTGCACAAACGGACAGCTTTTTACTGGGACAAGTAACCGCCAATTGCTTCC 767
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 TTTATTAGACTGCACAACCGGACAGCTTTTTACTGGGACAAGTAACCGCCAATTGCTTCC 794
Query 768 TTGTGTACCCGATTCTTTGGTTAGATCCGTGCATGATATCAACGGGGATCAGCAACAGGA 827
||||||||||||| ||||||||||||| || ||||||| |||||| ||||||||||||||
Sbjct 795 TTGTGTACCCGATGCTTTGGTTAGATCGGTTCATGATACCAACGGCGATCAGCAACAGGA 854
Query 828 TGCCATGCTGCTTTGGTTGGAAGAACATGGACGGCGGTTACAAACCGGCACTATAAAAGT 887
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 855 TGCCATGCTGCTTTGGTTGGAAGAACATGGCCGGCGGTTACAAACCGGCACTATAAATGT 914
Query 888 CCG-CGAACAGCACAATGTCAAGAGTATCAGTTTGTTCCCGGAGATTCCTCCCTTGTGTT 946
||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 CCGTC-AACAGAACAATGTCAAGAGTATCAGTTTGTTCCCGGAGATTCCTCCCTTGTGTT 973
Query 947 CTGTCGCCGTAACTAATGGTGTGCAGGTACGTGCTTCGTCTGTTTTTATCCCGGAAATAT 1006
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 974 CTGTCTCCGTAACTAATGGTGTGCAGGTACGTGCTTCGTCTGTTTTTATCCCGGAAATAT 1033
Query 1007 CTAACCTTCGGGATCAGCCACCGGCATACTGGTATGCGTATTCAATCCGGATGTCTCTCA 1066
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1034 CGAACCTTCGGGATCAGCCACCGGCATACTGGTATGCATATTCAATCCGGATGTCTCTCA 1093
Query 1067 TGCCAGAAGGATGCATCTTGAATGGGACACATCATAGCTCTTGCCAACTGTATTGGAGAC 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1094 TGCCAGAAGGATGCATCTTGAATGGGACACATCATAGCTCTTGCCAACTGTATTGGAGAC 1153
Query 1127 GTTGGGTTATCCGAGCTGATAATGAAGCGATAGATAATGTTAATGGAGAAGCTGTGATAG 1186
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 1154 ATTGGGTTATCCGAGCTGATAATGAAGTGATAGATAATGTTAATGGAGAAGCTGTCATAG 1213
Query 1187 GAAAGTACCCGCTCTTACAAGCTGGAGAGGAAGAGTTTGTGTATGAGAGTTGTTCTAGTT 1246
|||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 1214 GAAAGTACCCGCTCTTACAAGCCGGGGAGGAAGAGTTTGTGTATGAGAGTTGTTCCAGTT 1273
Query 1247 TTCCAACAACTGCTGGATCCATTGAAGGCTCTTTCACCTTTGTGCCTGGAAGTTTGAGAG 1306
|||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1274 TTCCGACAACTGCTGGATCCATTGATGGCTCTTTCACCTTTGTACCTGGAAGTTTGAGAG 1333
Query 1307 ATCCAAAAGGGGGTCAATTCGAAGTCAAAGTCGCAGAGTTTCCTCTGGAGTTACCGGACT 1366
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1334 ATCCAAAAGGGAGTCAATTCGAAGTCAAAGTCGTAGAGTTTCCTCTGGAGTTACCGGACT 1393
Query 1367 ACATCTTCTGAACTCTTTCTGGCACAAGGTTCGTTACTCTTTCAAGATAATTCGTTATAT 1426
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1394 ACATCTTCTGAACTCTTTCTGGCACAAGGTTCGTTACTCTTTCAAGATAATTTGTTGTAT 1453
Query 1427 CGGTTTTCATTGTCCATACAGCATGCAATGTACTTATAAAATAAAGGTGTGGGATCAACT 1486
|| ||| | |||||| ||||||||||||||| || ||||||||||||||| |||||||||
Sbjct 1454 CG-TTTGCTTTGTCCGTACAGCATGCAATGTCCTAATAAAATAAAGGTGTTGGATCAACT 1512
Query 1487 GGTTTACAAGTTCATGAGAACACATTATTCTTAACAGTTTTACTTAA 1533
|||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1513 GGTTTACAAGTTCATGAGAACAGATTATTCTTAACAGTTTTACATAA 1559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75652221315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5