BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470636
Length=861
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06180.1 | Symbols: ATMYB13, ATMYBLFGN, MYB13 | myb domain p... 1190 0.0
> AT1G06180.1 | Symbols: ATMYB13, ATMYBLFGN, MYB13 | myb domain
protein 13 | chr1:1889408-1891158 FORWARD LENGTH=912
Length=912
Score = 1190 bits (644), Expect = 0.0
Identities = 762/816 (93%), Gaps = 19/816 (2%)
Strand=Plus/Plus
Query 59 ATGGGAAGAAGACCATGCTGTGAGAAAATAGGATTGAAGAAAGGGCCATGGAGTGCTGAA 118
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 103 ATGGGGAGAAGACCATGCTGTGAGAAGATAGGATTGAAGAAAGGGCCATGGAGTGCTGAA 162
Query 119 GAAGATCGAATCTTGATCAATTATATTAGTCTCCATGGCCATCCCAATTGGAGAGCTCTC 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 GAAGATCGAATCTTGATCAATTATATTAGTCTCCATGGCCATCCCAATTGGAGAGCTCTC 222
Query 179 CCTAAACTAGCCGGGCTACTTCGGTGCGGAAAAAGTTGCAGGCTTCGTTGGATTAATTAT 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CCTAAACTAGCCGGGCTACTTCGGTGCGGAAAAAGTTGCAGGCTTCGTTGGATTAATTAT 282
Query 239 TTGAGACCAGACATCAAACGTGGCAATTTCACTCCTCATGAAGAAGATACTATCATCAAC 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 283 TTGAGACCAGACATCAAACGTGGCAATTTCACTCCTCATGAAGAAGATACTATCATCAGC 342
Query 299 TTACATCAAATCTTAGGCAACAGATGGTCTGCGATAGCTGCAAAATTGCCAGGACGAACA 358
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 343 TTACATCAACTCTTAGGCAACAGATGGTCTGCGATAGCTGCAAAATTGCCTGGACGAACA 402
Query 359 GACAACGAAATTAAAAATGTTTGGCACACTCATTTAAAGAAAAGACTCCACCATAATCAA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 403 GACAACGAAATTAAAAATGTTTGGCACACTCATTTAAAGAAAAGACTCCACCACAGTCAA 462
Query 419 GATCAAAATAACAAGGAAAATTTCGTCTCTACTACAGCTGCGGAGAGGC-----T----G 469
|||||||| ||||||||| ||||||||||||||||||||||||||| || | |
Sbjct 463 GATCAAAACAACAAGGAAGATTTCGTCTCTACTACAGCTGCGGAGATGCCAACCTCTCCG 522
Query 470 CAACAACAATCTAGCAGTAGCGCCGACATTTCAGAAATTACAACATCGGGAAACAATAAC 529
|||||||||||||| ||||| ||||||||||||| ||||||||||| ||||||||| ||
Sbjct 523 CAACAACAATCTAGTAGTAGTGCCGACATTTCAGCAATTACAACATTGGGAAACAACAAT 582
Query 530 GACATCTCCAATAACAACAAAGACTCTGCGACGTCATCCGAAGATGTTCTTGCAGTTATA 589
||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 583 GACATCTCCAATAGCAACAAAGACTCCGCGACGTCATCCGAAGATGTTCTTGCAATTATA 642
Query 590 GATGAGAGCTTTTGGTCAGAAGTCGTATTGATGGACTGTAACATTTCAGGAGATGGTGAG 649
||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||| ||
Sbjct 643 GATGAGAGCTTTTGGTCAGAAGTGGTATTGATGGACTGTGACATTTCAGGAAATG---AG 699
Query 650 AAGAATGAGAAAAAGATAGAGAATTGGGAGGGCTCATTAGATAAAAATGATAAGGGATAT 709
|||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||
Sbjct 700 AAGAATGAGAAAAAGATAGAGAATTGGGAGGGCTCACTAGATAGAAACGATAAGGGATAT 759
Query 710 AACCATGACATGGAGTTTTGGTTTGACCATCTCACTAGTAGTCGT---ATAGTTGGAGAA 766
|||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||
Sbjct 760 AACCATGACATGGAGTTTTGGTTTGACCATCTCACTAGTAGTAGTTGTATAATTGGAGAA 819
Query 767 ATTTGCGACATTTCTGAGTTTTGATTTGTTTTAGTTAA-GACTTATATCTTCCTTTAATT 825
|| | ||||||||||||||||||||||||||||||||| ||||||||| | | || ||
Sbjct 820 ATGTCCGACATTTCTGAGTTTTGATTTGTTTTAGTTAAAGACTTATATAT-C-TTCC-TT 876
Query 826 TGTAACCCACATGAATAAATGTCGTTTACGCTTCCT 861
||| ||||||||||||||| |||||||||| |||||
Sbjct 877 TGTGACCCACATGAATAAAAGTCGTTTACGTTTCCT 912
Score = 60.2 bits (32), Expect = 3e-08
Identities = 34/35 (97%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 26 CTTCCTCCATTTCTTCTTTCTCTCCTCGTTTAAAT 60
|||| ||||||||||||||||||||||||||||||
Sbjct 44 CTTCTTCCATTTCTTCTTTCTCTCCTCGTTTAAAT 78
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41995746892
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5