BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470689 Length=1082 Score E Sequences producing significant alignments: (Bits) Value AT1G06680.1 | Symbols: PSBP-1, OEE2, PSII-P, OE23 | photosystem... 1768 0.0 > AT1G06680.1 | Symbols: PSBP-1, OEE2, PSII-P, OE23 | photosystem II subunit P-1 | chr1:2047825-2049418 FORWARD LENGTH=1139 Length=1139 Score = 1768 bits (957), Expect = 0.0 Identities = 1024/1056 (97%), Gaps = 5/1056 (0%) Strand=Plus/Plus Query 1 ACTCTTGGTTTCATCTCCATACATTAACACACTCCAACAATCCTCAAAAAACACTTTCAT 60 ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 3 ACTCTTGGTTTCACCTCCATACATTAACACA--CCAACAATCCTCAAAAAACACTTTCAT 60 Query 61 AGCTTAATCACACACAA--AAagaagagagaaagagagatatacagagagagaTAATGGC 118 | ||||||||||||||| | |||||||||||||||||| | | ||| |||||||||||| Sbjct 61 AACTTAATCACACACAAGGAGAGAAGAGAGAAAGAGAGAAAGAGAGACAGAGATAATGGC 120 Query 119 GTACAGTGCGTGTTTCCTACACCAGAGCGCATTGGCTTCCTCAGCCGCACGATCATCATC 178 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 121 GTACAGTGCGTGTTTCCTACACCAGAGCGCATTGGCTTCATCAGCCGCACGATCATCATC 180 Query 179 TTCCTCCTCATCCCAGCGTCACGTGTCACTCTCCAAACCTGTTCAGATTATGTGTAAAGC 238 ||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||| Sbjct 181 TTCCTCCTCATCCCAGCGTCACGTGTCGCTCTCCAAACCTGTTCAGATCATCTGTAAAGC 240 Query 239 TCAACAGTCTCATGAAGACGATAACTCCGCCGTCTCCCGCCGTCTTGCTCTCACTCTCCT 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TCAACAGTCTCATGAAGACGATAACTCCGCCGTCTCCCGCCGTCTTGCTCTCACTCTCCT 300 Query 299 CGTCGGCGCCGCTGCTGTTGGTTCCAAAGTATCTCCTGCTGATGCCGCCTACGGTGAAGC 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CGTCGGCGCCGCTGCTGTTGGTTCCAAAGTATCTCCTGCTGATGCCGCCTACGGTGAAGC 360 Query 359 TGCAAATGTGTTTGGGAAGCCAAAGACGAACACAGACTTCTTGCCATACAACGGAGATGG 418 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 361 TGCAAACGTGTTTGGGAAGCCAAAGACGAACACAGACTTCTTGCCATACAATGGAGATGG 420 Query 419 ATTCAAAGTGCAGGTGCCAGCAAAATGGAACCCAAGCAAAGAGATTGAGTATCCAGGACA 478 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GTTCAAAGTGCAGGTTCCAGCAAAATGGAACCCAAGCAAAGAGATTGAGTATCCAGGACA 480 Query 479 AGTCCTTAGGTACGAAGACAACTTCGATGCTACTAGCAATCTCAATGTCATGGTCACTCC 538 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 AGTCCTTAGGTTCGAAGACAACTTCGATGCTACTAGCAATCTCAATGTCATGGTCACTCC 540 Query 539 TACCGACAAGAAGTCCATCACTGATTACGGTTCTCCCGAAGAGTTCCTCTCTCAGGTTAA 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 TACCGACAAGAAGTCCATCACTGATTACGGTTCTCCCGAAGAGTTCCTCTCTCAGGTTAA 600 Query 599 TTACCTCCTAGGGAAACAAGCTTACTTCGGTGAGACTGCCTCTGAGGGAGGCTTTGACAA 658 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 TTACCTCCTAGGGAAACAAGCTTACTTCGGTGAGACTGCCTCTGAGGGAGGCTTTGACAA 660 Query 659 CAATGCAGTGGCAACAGCAAACATTCTGGAGTCATCATCTCAGGAAGTTGGTGGGAAACC 718 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 CAATGCAGTGGCAACAGCAAACATTCTGGAGTCATCATCTCAGGAAGTTGGTGGGAAACC 720 Query 719 CTACTATTACCTGTCTGTGTTGACAAGAACGGCTGATGGAGACGAAGGTGGGAAGCATCA 778 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 CTACTATTACTTGTCTGTGTTGACAAGAACGGCTGATGGAGACGAAGGTGGGAAGCATCA 780 Query 779 GCTGATCACAGCCACTGTGAATGGAGGGAAGCTTTACATCTGCAAAGCACAAGCTGGAGA 838 |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 GCTGATCACAGCAACCGTGAATGGAGGGAAGCTTTACATCTGCAAAGCACAAGCTGGAGA 840 Query 839 CAAGAGGTGGTTCAAGGGAGCTAGGAAATTTGTCGAGAGTGCAGCCACTTCTTTCAGTGT 898 ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 841 CAAGAGGTGGTTCAAGGGAGCCAGGAAATTTGTCGAGAGCGCAGCCACTTCTTTCAGTGT 900 Query 899 TGCTTGAGTGAAAGCAACACAACATAACAATGCTCTGCTTGCTTTCTTCATTTGTCTCTT 958 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 901 TGCTTGAGTGAAAGCAACACAACGTAACAATGCTCTGCTTGCTTTCTTCATTTGTCTCTT 960 Query 959 GTAAAAAATGGAAA-TGAAACTGAGCTTTTGAGAACTATCAAGATGATGTCACCTTTGCG 1017 |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 961 GTAAAAAATGGAAAATGAAACTGAGCTTTTGAGAACTATCAAGATGATGTTACCTTTTCG 1020 Query 1018 GTTTCACTTGTGTACCTGTGATAACAGACTCGTTTT 1053 | |||||||||||||| |||||||||||||||||| Sbjct 1021 GCATCACTTGTGTACCTATGATAACAGACTCGTTTT 1056 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53011775520 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5