BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470720
Length=655
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06980.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 987 0.0
> AT1G06980.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: sepal, male
gametophyte, carpel; EXPRESSED DURING: 4 anthesis; BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30230.1);
Has 159 Blast hits to 159 proteins in 13 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants
- 159; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr1:2143031-2143821 REVERSE LENGTH=791
Length=791
Score = 987 bits (534), Expect = 0.0
Identities = 632/675 (94%), Gaps = 23/675 (3%)
Strand=Plus/Plus
Query 1 ATAAATCTGATAATC-----A-AT-AAATACTCAAAAAATAAAGAGAAAGCAGA--GGAG 51
||||||||||||||| | || |||||||||||| | |||||||||| | | ||
Sbjct 1 ATAAATCTGATAATCAATATATATCAAATACTCAAAACA-AAAGAGAAAG-AAATTAAAG 58
Query 52 AGAGAGATGGGAAACAGCCTAAGGTGTTGTCTGGCTTGTGTTCTTCCATGTGGAGCACTA 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 AGAGAGATGGGAAACAGCCTAAGGTGTTGTCTGGCTTGTGTTCTTCCATGTGGAGCACTA 118
Query 112 GATTTGATCAGGATCGTTCATCTAAACGGCTACGTTGAGGAGATCACACGGTCAATAACT 171
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 GATTTGATCAGGATCGTTCATCTAAACGGCTACGTTGAGGAGATCACACGGTCAATAACC 178
Query 172 GCCGGAGAGATCCTCCAAGCAAACCCAAACCATGTCCTAAGCAAACCATGTTCTCAAGGA 231
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 179 GCCGGAGAGATCCTCCAAGCAAACCCTAACCATGTCCTAAGCAAACCATGTTCTCAAGGA 238
Query 232 GTTGTCCGCAAAATCTTGATCTTGTCCCCTGAATCTGAGCTCAAGCGAGGAAGCATCTAT 291
|||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct 239 GTTGTCCGCAAAATCTTGATCTTGTCTCCTGAATCCGAGCTCAAACGAGGAAGCATCTAT 298
Query 292 TTTCTCATCCCTGATTCTTCCTTGCCGGAGAAGAAAAGGAGGAGAAAGGACGCTCCTCGC 351
||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 299 TTTCTCATCCCCGATTCTTCCTTGCCGGAGAAGAAAAGGCGGAGAAAGGACACTCCTCGC 358
Query 352 CGGAAAAAGACTCTC-AACAACCCTAGTGCCGACGCCACCGG---AGAAGTTAAAGGTGA 407
||||| |||| |||| || |||||||||||||||||| |||| |||| ||||||||||
Sbjct 359 CGGAAGAAGAATCTCCAA-AACCCTAGTGCCGACGCCGCCGGCCGAGAAATTAAAGGTGA 417
Query 408 TGATGAATGTGTGAAGTTGTGTGAGAAGTACTTAGAAGAAGTTGTGTCGTCGGCGTCGAC 467
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 418 TGAGGAATGTGTGAAGTTGTGTGAGAAGTACTTAGAAGAAGTAGTGTCGTCGGCGTCGAC 477
Query 468 AGGTAAAGAGCACCGTCATCGCCGGCGGCACAGCAGATCGGCGTCAGTATCCACGTGGCG 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AGGTAAAGAGCACCGTCATCGCCGGCGGCACAGCAGATCGGCGTCAGTATCCACGTGGCG 537
Query 528 GCCTCTCCTTGACAGTATCTCTGAGGATCTTAATTAATTCCTCTTCCCTTTA--t-t-tt 583
|||||||||||||||||||||||||||||||||||||||||||| |||||| | | ||
Sbjct 538 ACCTCTCCTTGACAGTATCTCTGAGGATCTTAATTAATTCCTCTTTCCTTTAAATCTCTT 597
Query 584 ttttt---GTTGCTTCTAGCTAATGGTGttttttgtccggaagccggatttttatcattc 640
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TTTTTTTTGTTGCTTCTAGCTAATGGTGTTTTTTGTCCGGAAGCCGGATTTTTATCATTC 657
Query 641 tctttttcatttttt 655
|||||||||||||||
Sbjct 658 TCTTTTTCATTTTTT 672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31647512610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5