BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470722
Length=1995
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07000.1 | Symbols: ATEXO70B2, EXO70B2 | exocyst subunit exo... 3049 0.0
> AT1G07000.1 | Symbols: ATEXO70B2, EXO70B2 | exocyst subunit exo70
family protein B2 | chr1:2150194-2152325 REVERSE LENGTH=2024
Length=2024
Score = 3049 bits (1651), Expect = 0.0
Identities = 1887/2001 (94%), Gaps = 16/2001 (1%)
Strand=Plus/Plus
Query 1 CAATCATATGGCTGAAGCCGGTGACGAGAATCTATACGCCGCGGCCAGAGACATAGCCAG 60
||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 14 CAATCATATGGCTGAAGCCGGTGACGAGAATCTTTACGCCGCCGCCAGAGACATCGCCAG 73
Query 61 AGCTCTCGGCAAGGATCCAAGTGCTGCCGGAGATATCTTACAGATTCTCTCCGGTTATGG 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 74 AGCTCTCGGCAAGGATCCAAGTGCCGCCGGAGATATCTTACAGATTCTCTCCGGTTATGG 133
Query 121 TGCTTCCGGAAACCGCGGCGGCGATCCTCGACCCACCGCATCCCGCGGCGGTTCAAACGT 180
|||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||
Sbjct 134 CGCTTCCGGAAACCGCGGCGGAGATCCTCGACCCACCCCATCCCGCGGCGGCTCAAACGT 193
Query 181 CAACCTTGACCGAGCCCTCAATTCCTTAGAGAGACAGATCTCCAGCTACATCGTGGAGGA 240
|||| ||||||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 194 CAACTTTGACCGAGCCCTCACCTCTTTAGAGAGACAGATCTCCAGCTACATCGTGGAAGA 253
Query 241 TCGGCCGATCTGGTCCGATCCCGTTGACTCGCGCACCTTCCTCGACTCTGTTGATGAGCT 300
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 TCGACCGATCTGGTCTGATCCCGTTGACTCGCGCACCTTCCTCGACTCTGTTGATGAGCT 313
Query 301 CA-TTTCGATTGCCGGAGACTTGAGATCCATGGCCGGAGATAAATCCGTCGTCGTCTGTC 359
| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 314 -ACTTGCGATTGCCGGAGACTTGAGATCCATGGCCGGAGATAAATCCGTCGCCGTCTGTC 372
Query 360 AATCCCGTGCCGATGAGCTGATTCAACAGGTGATGTTTAGGCTTCAAGAAGAGTTTGGGT 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 373 AATCCCGTGCCGATGAGCTGATTCAACAGGTGATGTTTAGGCTTCAAGAAGAGTTTGGAT 432
Query 420 TTGTAATGGACCGAGCCCCTGACTCGTTTGACTCGGACGATGAGTTCTCCGGCGAAGAAG 479
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 433 TTGTAATGGACCGAGCCCCTGACTCGTTTGACTCGGACGATGAGTTCCCCGGCGAAGAAG 492
Query 480 ACAACGACACAAGCGACGGGGTAATCGTTGCTCGTCCAATCACTGATTACAAAATCGTGA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 ACAACGACACAAGCGACGGGGTAATCGTTGCTCGTCCAATCACTGATTACAAAATCGTGA 552
Query 540 TCGAGGCGTTACAATCTAGCGTTATTGGCGATCTAAACGCGATCGCTGTGAGGATGGTTG 599
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
Sbjct 553 TCGAGGCGTTACAATCTAGCGTTATTGGCGATCTAAACGCGATCGCTGTGCGCATGGTCG 612
Query 600 CTGGTGGATATGCAAAAGAGTGTTCAAGAGCGTACAGCAGTAGACGAAGGGAGTTTCTAG 659
||||||||| |||||||||||||||||||| |||||||||| ||||||| ||||||||||
Sbjct 613 CTGGTGGATTTGCAAAAGAGTGTTCAAGAGTGTACAGCAGTCGACGAAGAGAGTTTCTAG 672
Query 660 AGGAGAGTTTGTCGAGGTTGCATCTCAGAGGATTAAGTATGGAGGAAGTTCAAGAGACTC 719
||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||| ||
Sbjct 673 AGGAGAGTTTGTCGAGGTTACATCTCAGAGGACTAAGTATGGAGGAAGTGCAAGAGAGTC 732
Query 720 CTTGGCAAGATCTTGAAGACGAAATCGACCGTTGGATCAAAGCCGTAACTCTGGTGTTCC 779
| ||||||||||||||||||||||||||||||||||| ||||||||||| ||| | ||||
Sbjct 733 CATGGCAAGATCTTGAAGACGAAATCGACCGTTGGATTAAAGCCGTAACGCTGATATTCC 792
Query 780 GCGTTTTCTTCCCAAGCGAGCGTCTTCTCTGCGATCGCGTTTTCTCTGATCTTCCTGTTT 839
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 ACGTTTTCTTCCCGAGCGAGCGTCTTCTCTGCGATCGCGTTTTCTCTGATCTTCCTGTTT 852
Query 840 CCTCTGTAACCGATCTTTCTTTCATGGAAGTTTGTCGAGGAACCACCACACAGCTTCTGA 899
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 853 CCTCTGTAACCGATCTTTCTTTCATGGAAGTTTGTCGCGGAACCACAACACAGCTTCTGA 912
Query 900 ATTTCGCCGACGCGATCGCTTTAGGGAGCCGTTTGCCGGAACGTTTGTTTAAGGTTGTGG 959
||||||| ||||||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 913 ATTTCGCAGACGCGATCGCTTTAGGAAGCCGTTTACCTGAACGTTTGTTTAAGGTTGTGG 972
Query 960 ATTTATACGAAGCGATGCAAGACCTAATTCCTAAGATGGAAACGCTATTCTCTGATCGAT 1019
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 973 ATTTATACGAAGCGATGCAAGACCTTATTCCTAAGATGGAAACGCTATTTTCTGATCGAT 1032
Query 1020 ATTGTTTGCCGCTAAGGCATGAGGCGGTTGCGATTTATAAACGGTTAGGGGAAGCGATTA 1079
|||||| ||||||||||||||||||| | |||||| ||||||||||||| ||||||||||
Sbjct 1033 ATTGTTCGCCGCTAAGGCATGAGGCGCTCGCGATTCATAAACGGTTAGGAGAAGCGATTA 1092
Query 1080 GAGGGATATTTATGGAGTTGGAGAACTTAATCCGTCGTGACCCTCCCAAAACAGCATTTC 1139
||||||||||||||||| ||||||| |||||||| |||||||||||||||||||| ||||
Sbjct 1093 GAGGGATATTTATGGAGCTGGAGAATTTAATCCGACGTGACCCTCCCAAAACAGCGTTTC 1152
Query 1140 CTGGCGGTGGGATTCACCCGATCACGCGGTACGTGATGAATTATCTGCGTGCGGCGTGTA 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 CTGGCGGTGGGATTCACCCGATCACGCGGTACGTGATGAATTATCTGCGTGCGGCGTGTA 1212
Query 1200 AATCGCGGCAATCATTGGAGCAGATTCTTGACCAGACTGGGAATGAAACCGGATCAGATA 1259
||||||||||||| ||||||||||| ||||||||||| || |||||||||||||||||||
Sbjct 1213 AATCGCGGCAATCGTTGGAGCAGATACTTGACCAGACAGGAAATGAAACCGGATCAGATA 1272
Query 1260 CTAGACCTTTGTCTGTGCAAATCGTATGGGTTTTGGAGTTGTTGGAGAGTAACTTGGAAG 1319
| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1273 CGAGACCGTTGTCTGTGCAAATCATATGGGTTTTGGAGTTGTTGGAGAGTAACTTGGAAG 1332
Query 1320 GCAAGAAAAGAACTTACCGCGATCCGTCTTTGTGCTTCTTGTTCATGATGAACAATGACA 1379
|||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||
Sbjct 1333 GCAAGAAAAGAACTTATCGTGATCCGTCTTTGTGTTTCTTGTTCATGATGAACAATGACA 1392
Query 1380 AGTATATTCTTGATAAGGCCAAGGATAACGAGCTAGGTTTAGTCCTAGGAGAAGATTGGA 1439
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1393 AGTATATTCTTGATAAGGCTAAGGATAACGAGCTAGGTTTAGTCCTAGGAGAAGATTGGA 1452
Query 1440 TTGTGAAACACGCAGCGAAACTGAGGCAATACCATTCTAATTACCGAAGGAGCTCATGGA 1499
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1453 TTGTGAAGCACGCAGCGAAACTGAGGCAATACCATTCTAATTACCGAAGGAGCTCATGGA 1512
Query 1500 ACCAAGTGGTGGGATTGCTTAGAACAGAGGGTCCGTATCCCAAGTTAATAGAGAACCTTA 1559
|||||||||||||||||||||| || || |||||||||||||||||| |||||||||| |
Sbjct 1513 ACCAAGTGGTGGGATTGCTTAGGACCGATGGTCCGTATCCCAAGTTAGTAGAGAACCTAA 1572
Query 1560 GACTGTTCAAAGCCCAGTTCGATGAGGTGTGTAAGACT-CAATCTCAATGGGTTGTTACT 1618
|| |||||||| | ||||||||||||||||||||| | ||||||||||||||||||| |
Sbjct 1573 GATTGTTCAAATCACAGTTCGATGAGGTGTGTAAGG-TGCAATCTCAATGGGTTGTTAGT 1631
Query 1619 GATGGGCAGTTGAGGGAGGAGTTAAGAAGCTCTGTTGCCGGAATTGTGTCTCCGGCGTAC 1678
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1632 GATGGGCAATTGAGGGAGGAGTTAAGAAGCTCTGTTGCCGGAATTGTATCTCCGGCGTAC 1691
Query 1679 TCGAATTTCATCAGAAGATTGAAGGAGTCGCCGGAGATTAATGGGAGGCGTGGAGAGCCG 1738
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1692 TCGAATTTCATCAGAAGATTGAAGGAGTCACCGGAGATTAATGGGAGGCGTGGAGAGCCG 1751
Query 1739 TTTATTCCGTATACTGTTGAAGATGTGGAGTTTAGAATTAAAGGGCTGTTCAAGGAAAGC 1798
|||||||||||||||||||||||||||||||||| ||| ||| || ||||||||||||||
Sbjct 1752 TTTATTCCGTATACTGTTGAAGATGTGGAGTTTATAATCAAACGGTTGTTCAAGGAAAGC 1811
Query 1799 TCAAGATGattaaattaaatatgaaaagaaattaaaagattataattgttaatcgaaatt 1858
||||| ||||||||||| ||||||||||||||||||| ||| | ||| ||| ||| ||
Sbjct 1812 TCAAGTTGATTAAATTAGATATGAAAAGAAATTAAAAAATTCTTATT---AATTGAATTT 1868
Query 1859 ttttgtaaaattGTGAATCATTCTGt-ttttttt-t-tt-CTTGGGTGAGTAATGTTCAT 1914
|||||||||||||||||||||||||| ||||||| | || ||||||||| ||||||||||
Sbjct 1869 TTTTGTAAAATTGTGAATCATTCTGTGTTTTTTTATCTTTCTTGGGTGAATAATGTTCAT 1928
Query 1915 GGATGGGTGGAATCACCTTTTCGATGTTGATTTGTCAGCTACTTTTATTGCTCTTTTGAT 1974
|||| ||||||||||||||||||| ||||||||| | | | | |||||| |||||||
Sbjct 1929 GGATCGGTGGAATCACCTTTTCGACATTGATTTGTT--C-A-TGT-ATTGCTTTTTTGAT 1983
Query 1975 GTAAGAAATTTCCTTGAGGTT 1995
||||||||||||||| |||||
Sbjct 1984 GTAAGAAATTTCCTTAAGGTT 2004
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98844873105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5