BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470748
Length=1390
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07310.1 | Symbols: | Calcium-dependent lipid-binding (CaLB... 1899 0.0
> AT1G07310.1 | Symbols: | Calcium-dependent lipid-binding (CaLB
domain) family protein | chr1:2247509-2248961 REVERSE LENGTH=1453
Length=1453
Score = 1899 bits (1028), Expect = 0.0
Identities = 1310/1434 (91%), Gaps = 68/1434 (5%)
Strand=Plus/Plus
Query 1 TTTGATACAGATATCTAAGATACGAGCGCACGTTAGCT---A--A----G---GCCA--- 45
|||||||||||||| | ||||||||||||||||||||| | | | ||||
Sbjct 44 TTTGATACAGATATTTGAGATACGAGCGCACGTTAGCTAAGACCACCGCGTAAGCCACCG 103
Query 46 TATCGGCTTAAAACGCACCGTATTCATTCATGGCTTCGTCGGAGCCACTCGACCTGGTTA 105
| ||| ||| |||||||||| | ||||||| ||||||||||||||||||||||||||
Sbjct 104 TCTCGTCTTGAAACGCACCG---T-ATTCATGACTTCGTCGGAGCCACTCGACCTGGTTG 159
Query 106 TCACCGTCGTCTCTGCCAAGCACCTGAAGAATGTCAACTGGCGTAACGGTGACCTGAAAC 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 160 TCACCGTCGTCTCTGCCAAGCACCTGAAGAATGTCAACTGGCGTAACGGTGACCTGAAAC 219
Query 166 CCTACGTTGTTCTGTATCTTGACCAAGACCACCCTCTCTCCACCCGCTCCGATGATTCCG 225
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 CCTACGTTGTTCTGTATCTTGACCAAGACCACCCTCTCTCCACCCGCTCCGATGATTCCT 279
Query 226 CCTCCATCAAACCGGTGTGGAACGAGCGGATTACTCTTCCTCTCACCCGATCCGTCCACG 285
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 280 CCTCCATCAAACCGGTGTGGAACGAGCGGATTACTCTTCCTCTCACCCGATCTGTCCACG 339
Query 286 AATCGGTCCTCAACATCGAGATTTTTCATTCCAATTCCTCGGATCTGGCGAAAACCCTCG 345
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 340 AATCGGTCCTCAACATCGAGGTTTTTCATTCCAATTCTTCGGATCTGGCGAAAACCCTCG 399
Query 346 TCGGATCGGTTAGGTTTCCTCTTGCTCGCTTGATTGACTCGGATGGGTCAATGATTCCGG 405
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 400 TCGGATCGGTTAGGTTTCCTCTAGCTCGTTTGATTGACTCGGACGGGTCAATGATTCCGG 459
Query 406 AATTGATCAACTCGCTCGAGCTGGTCCGTCCATCGGGTCGGCCACAGGGGAAGATTCGCT 465
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
Sbjct 460 AATTGATCAACTCGCTCGAGCTGGTTCGTCCATCGGGTCGACCACAGGGGAAGATTCGTT 519
Query 466 TGAAGCTCGCGATCAAAGAGAGACCTATCCCTCCACCGCAGCATCCTCCGCCACGTCCTC 525
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 520 TGAAGCTCGCGATCAAAGACAGACCAATCCCTCCACCGCAGCATCCTCCGCCACGTCCTC 579
Query 526 AATCTCAACCACTAGATTACTATTCTGCCCCTCAAGGAAACCATTATTACTCCCCTA--- 582
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 AATCTCAACCACTAGATTACTATTCTGCCCCTCAAGGAAACCATTATTACTCCCCTAGCC 639
Query 583 -----CC-CCTCCTCCTCCTCAAGCTCCGATCA-CGACTCCGTCTCCTCAGCGTGACTAC 635
|| ||||||||||||||||| ||||||| || |||| ||||||||||||||||||
Sbjct 640 CTCCTCCTCCTCCTCCTCCTCAAGCACCGATCACCG-CTCCATCTCCTCAGCGTGACTAC 698
Query 636 AGAGAATTCTCACAGTCACCGTCTCCGTCTCCTTACGCATTCACTGATCATTACTATTCC 695
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 699 AGAGAATTCTCACAGTCACCGTCTCCGTCTCCTTACGCATTCACTGATCACTACTATTCC 758
Query 696 GGGTATTATTACCCGCCTCCTCCACCACGTTCAATGTACGATCGTGCCTCCAATTACGGC 755
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 GGGTATTATTATCCGCCTCCTCCACCACGTTCAATGTACGATCGTGCCTCCAATTACGGC 818
Query 756 CTCCCAAGTGGCCCATCTGCTCCCGTCGATGCCTTCTCATCGATTGATCACAAGCAGCCT 815
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 819 CTCCCAAGTGGCCCATCTGCTCCCGTTGATGCCTTCTCATCGATTGATCACAAGCAGCCT 878
Query 816 CCTTTAGCCCCTCCTCGGTTTTCCAATTACGGTCCACCGCCTAGTGGGCCATCAGCTCCC 875
|||||||| |||||||||||||| || ||||||||||||||||||||||| ||||| |||
Sbjct 879 CCTTTAGCTCCTCCTCGGTTTTCTAACTACGGTCCACCGCCTAGTGGGCCCTCAGCACCC 938
Query 876 GTTGATGCCTTTCCGGGTAACGAGTACAAGCCACAGGCTCCTCCTATGGGCTCACGATTG 935
||||||||||||| || || ||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 939 GTTGATGCCTTTCTGGTTACCGAGTACAAGCCACAAGCTCCACCTATGGGCTCGCGATTG 998
Query 936 TCTAGCTACGGAGTGCCTAATGGTCCATCGGCGCCAGTCGATTACTCTCCTTATGATCAC 995
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 999 TCTAGCTACGGAGTGCCTAATGGTCCATCGGCACCAGTCGATTACTCTCCTTATGATCAC 1058
Query 996 AGGCAGTTGCAGAAGACGATGGGTGGATTGAGCTTGGAAGAAGAGAGAGCTGCTGCAGAG 1055
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1059 AGGCAGTTGCAGAAGACGATGGGTGGATTGAGCTTAGAGGAAGAGAGAGCTGCTGCAGAG 1118
Query 1056 AGGTCTGAGAGTGACTTCGTAGCTAGGCCAAACTACAGCTATGGCCGCGATTATCGCCGT 1115
|||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1119 AGGTCTGAGAGTGATTTCGGAGCTAGGCCAAACTACAGCTATGGCCGTGATTATCGCCGT 1178
Query 1116 GAATGTTGAGGATGG-AAAAAGTTGTTGACTTTCATAAGTGTGTGGCCTTTAC-AAGGCT 1173
||||||||||||||| ||||||||||||| ||||| ||||||| ||| ||| | ||||||
Sbjct 1179 GAATGTTGAGGATGGCAAAAAGTTGTTGAATTTCACAAGTGTGCGGCGTTT-CTAAGGCT 1237
Query 1174 TTACTTATCATCAGATTTACCATCCATGTTGGTGTTTGTAGATCACCAAGAAATGGCTGG 1233
|||||||||||||||||| ||||||||| | | | ||||| ||||||||||
Sbjct 1238 TTACTTATCATCAGATTT---------GTTGGTGTTAG-A-A-CACCAGGAAATGGCTGA 1285
Query 1234 TGaaaaaaaTATGAATTTGGTGAAGACAGTATATCTTTATGTCTATATGTATTTCTCGTT 1293
||| |||| |||||||||||||||| ||||| || |||||||||||||| |||||||
Sbjct 1286 TGACAAAA-TATGAATTTGGTGAAG----TATATGTT-ATGTCTATATGTATGTCTCGTT 1339
Query 1294 TGTGAATTGATTTG---CTTCTTTCTAGCTG-----C--T---A----TTCTGTACCTTT 1336
|||||||||||||| |||||||||||||| | | | ||||||||||||
Sbjct 1340 TGTGAATTGATTTGTTGCTTCTTTCTAGCTGATATTCGGTGTTACCCCTTCTGTACCTTT 1399
Query 1337 GTACATGCTTCTAAAACATCTCTGATTTCTTTCCTTCTTTCAACTTCTTGAATC 1390
||||||| ||||||||||||||| ||||||||||||| |||| ||||||||||
Sbjct 1400 GTACATGTTTCTAAAACATCTCTCATTTCTTTCCTTCATTCAGTTTCTTGAATC 1453
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68473543380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5