BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470751
Length=1157
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07320.1 | Symbols: RPL4 | ribosomal protein L4 | chr1:22491... 1591 0.0
> AT1G07320.1 | Symbols: RPL4 | ribosomal protein L4 | chr1:2249133-2250529
FORWARD LENGTH=1246
Length=1246
Score = 1591 bits (861), Expect = 0.0
Identities = 1064/1157 (92%), Gaps = 33/1157 (3%)
Strand=Plus/Plus
Query 1 TTCTTCTTCTTCTTCGTTGTGATAGGTCAGGTCAGTGAACAACAATGGCTTCCTCTGCAA 60
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 14 TTCTTCTTCTTCTTCGTTGTGATAGGTCAGGTCAGGGAACAACAATGGCTTCTTCTGCAA 73
Query 61 CAGCGCCAAATTCGCTATCTTTCTTCTCATCTTCTCTCTTTTTGTCTTCCTCTCACCAAA 120
|||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 74 CAGCACCAAATTCGCTATCTTTCTTCTCATCTTCTCTCTTTTTATCCTCCTCTCACCAAA 133
Query 121 TCCCTAAAACCTACATTTCCGTCACCAAATTCGGCTCCGGCAGAGTCTCGAAACCGCTCT 180
|||||||||||||||||||||| | ||| |||||||||||||||||||||| ||||| |
Sbjct 134 TCCCTAAAACCTACATTTCCGTTTCAAAACTCGGCTCCGGCAGAGTCTCGAAGCCGCTTT 193
Query 181 CCGTCGCATCCCAGCTAGCGACTCTGCCGATTATCTCATTCGAGGGAGAGAAGGTCGGGG 240
| ||| | ||||||||||||||||| |||||| | |||||||| |||||||||||||| |
Sbjct 194 CTGTCTCTTCCCAGCTAGCGACTCTACCGATTCTATCATTCGAAGGAGAGAAGGTCGGAG 253
Query 241 AGACGTATCTAGACCTCAAAACGGCTCCGGAGGATACCGCGCGTGCTGTTGTGCACCGAG 300
|||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||
Sbjct 254 AGACGTATCTAGACCTCAAAGCGGCGCCGGAGGATACCGCGCGTGCCGTTGTGCACCGAG 313
Query 301 CCATCGTGACGGATTTGCAGAACAAGCGGCGAGGTACTGCTTCGACGCTGACTCGCGGTG 360
||||||||||||| || | ||||||||||||||||||||||| || |||||||||||||
Sbjct 314 CCATCGTGACGGACCTGAATAACAAGCGGCGAGGTACTGCTTCCACACTGACTCGCGGTG 373
Query 361 AAGTTCGTGGTGGTGGAATTAAACCTTACGCGCAGAAGAAAACTGGTCACGCGAGGCGTG 420
||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||
Sbjct 374 AAGTTCGTGGTGGTGGAATTAAACCTTACTCACAGAAGAAAACTGGCCACGCGAGGCGTG 433
Query 421 GATCTCAGAGAACACCGTTACGTCCCGGTGGAGGTGTGGTGTTCGGGCCCAGACCTAAGG 480
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 434 GATCTCAGAGAACACCGTTACGTCCCGGTGGAGGTGTGGTGTTTGGGCCAAGACCTAAGG 493
Query 481 ATTGGTCAATTAAAATCAATAGGAAGGAGAAGAAGCTGGCGATATCGACGGCGCTATCGA 540
||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||
Sbjct 494 ATTGGTCAATTAAAATCAATAGGAAGGAGAAGAAGCTAGCGATATCTACGGCGTTATCGA 553
Query 541 GTGCGGCTTCGT-CGGAAGGTGGTGCGATAGTGGTGGAGGAATTTGGGGACAAGTTTGAG 599
||||||| || | ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 554 GTGCGGCATC-TGCGGAAGGTGGTGCGATAGTGGTGGAGGAATTTGGGGAGAAGTTTGAG 612
Query 600 AAGCCCAAGACTAAAGATTTCTTAGCTGCGATGCAGAGGTGGGGATTGGATCCGAAGGAG 659
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 613 AAGCCCAAGACTAAAGATTTCTTAGCTGCGATGCAAAGGTGGGGATTGGATCCCAAGGAG 672
Query 660 AAAGCTATGTTTTTGATGATTGATGTGGATGAGAATGTGGCGAAATCGAGCAGGAACATT 719
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 673 AAAGCTATGTTCTTGATGATTGATGTGGATGAGAATGTGGCGAAATCGAGTAGGAACATT 732
Query 720 GGAACGTTGAGGATGTTGACGCCGAGGACGCTGAATCTGTTTGACATTTTGAACTCTGAT 779
||||| ||||||||||||||||| ||||| |||||||||||||| ||||||||| |||||
Sbjct 733 GGAACCTTGAGGATGTTGACGCCTAGGACACTGAATCTGTTTGATATTTTGAACGCTGAT 792
Query 780 AAGCTTGTTCTGACTCCTGCGGCTGTGGAGTTCTTGAATGCGAGGTACGGTGTTGATGCG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 AAGCTTGTTCTGACTCCTGCGGCTGTGGAGTTCTTGAATGCGAGGTACGGTGTTGATGCG 852
Query 840 GTGGAGGAAGAAGATGACGATGAAGATGACACGGAAG----AG-G-AAGCTTAAGAAAGA 893
||||||||||||||||||||||||||||| ||||||| || | ||||||||||| ||
Sbjct 853 GTGGAGGAAGAAGATGACGATGAAGATGAGACGGAAGGGTCAGAGGAAGCTTAAGAATGA 912
Query 894 GTAGCAGCCGTAGTTCCAATTGCTTCAAGTGTGGCTTAAT------------CTTGAGTA 941
|||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 913 GTAGCACCCGTAGTTCCAATTGCTTCAAGTGTGGCTTAATTATGAGTTTAATCTTGAGTA 972
Query 942 CATCTTCTTATTCGCCTTGATGAGGTCTTCTCTTTCCTTTTTGTGTAACAACAAGAGAAA 1001
|||||||| | || |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 973 CATCTTCTCACTCTCCTTGATGAGGTCTTCTCTTTCCTTTTTGTGTCACAACAAGAGAAA 1032
Query 1002 TGTGTATTTAATTTTAGAGTTTTT-T-AAGAGATCATCCTCAGTTTCT-GTCATACTGAT 1058
|||||||||| ||||||||||||| | ||||||||||||||| ||||| |||||||||||
Sbjct 1033 TGTGTATTTACTTTTAGAGTTTTTCTTAAGAGATCATCCTCAATTTCTTGTCATACTGAT 1092
Query 1059 TTTGTGTCCAACTCTCAATG--G-AGTCA--A---A--TTAGATATCATGAGAAACGTTG 1108
|||||||||||||||||||| | ||| | | | |||||||||||||| |||||||
Sbjct 1093 TTTGTGTCCAACTCTCAATGAAGGAGTAAGGAGTGAAATTAGATATCATGAGTAACGTTG 1152
Query 1109 ATTGTTTGTGCATCAGT 1125
||||| |||| ||||||
Sbjct 1153 ATTGTGTGTGTATCAGT 1169
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56776816395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5