BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470756 Length=1223 Score E Sequences producing significant alignments: (Bits) Value AT1G07350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1600 0.0 > AT1G07350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:2257425-2260101 REVERSE LENGTH=1456 Length=1456 Score = 1600 bits (866), Expect = 0.0 Identities = 1126/1245 (90%), Gaps = 44/1245 (4%) Strand=Plus/Plus Query 10 GGAAACGTGAAATTCATTTTGTTCCGGT-GG--GTCAGGTGCAGAGAGTTCTGGAACATC 66 |||||||||||||||||||| |||||| || ||||||||||||||||||||| | || Sbjct 5 GGAAACGTGAAATTCATTTTACTCCGGTGGGTCGTCAGGTGCAGAGAGTTCTGG-A-AT- 61 Query 67 ATCCATTGAGC-T--AG-A--G-GAAAC-ATGTCTTACTCAAGAAGGTCAAGATACTCTC 118 |||||||| || | || | | | ||||||||||||||||||||||||||||||| Sbjct 62 ATCCATTGCGCTTGGAGAATCGTTCGCCGATGTCTTACTCAAGAAGGTCAAGATACTCTC 121 Query 119 CATCGCTGTCTCCTTATGACAAGCGTCGTGGAAGGTCTGTCTCAAGGTCATTGTCTAGAA 178 | || || |||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 122 CTTCACTATCTCCTTATGACAAGCGTCGTGGAAGGTCTGTGTCAAGGTCATTGTCTAGAA 181 Query 179 GCCGGTCAAGGAGTTTCTCAAGCGATGCTGAGAATCCTGGTAACAGTTTATATGTAACTG 238 ||| | | |||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 182 GCCCGACGAGGAGTGTCTCAAGCGATGCTGAGAATCCTGGTAACAGTTTATATGTAACTG 241 Query 239 GATTGTCTCACCGGGTAACTGAAAGAGATCTCGAGGATCATTTCGCTAAAGAAGGAAAGG 298 |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 242 GATTGTCTCACCGGGTTACTGAAAGAGATCTGGAGGATCATTTCGCTAAAGAAGGAAAGG 301 Query 299 TAACGGATGTTCACCTTGTCCTGGACCCATGGACTAGAGAATCTCGCGGATTTGGTTTTA 358 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 302 TAACTGATGTTCACCTTGTCCTGGACCCATGGACTAGAGAATCTCGCGGATTTGGTTTTA 361 Query 359 TCTCTATGGAAAGTGTTGGTGATGCTAACCGTTGCATCAGATATCTAGATCACTCTGTTC 418 |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 362 TCTCTATGAAAAGTGTTGGTGATGCTAACCGTTGCATCAGATCTCTAGATCACTCTGTTC 421 Query 419 TGCAGGGCAGAGTCATTACAGTTGAGAAGGCAAGGCG-CTGTAGAGGACGTACTCCGACT 477 |||||||| | ||||| || |||||||||||||| || | |||||||||||||||| ||| Sbjct 422 TGCAGGGCCGCGTCATCACTGTTGAGAAGGCAAGACGTC-GTAGAGGACGTACTCCAACT 480 Query 478 CCGGGAAAGTACTTGGGGCTGAGAACCGCTCGAGGACGCCATAAGTCTCCTAGCTACTCT 537 || ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 481 CCAGGAAAGTACTTGGGGCTGAGAACTGCTCGAGGACGACATAAGTCTCCTAGCTACTCT 540 Query 538 CCCTGCAGGTCTGTTAGCAGCTCTCGTAGTCG-A----A-GCTACTCATCTGATCGGAGC 591 ||| |||||||||||||| ||||||||||||| | | ||||||||||||||||| || Sbjct 541 CCCCGCAGGTCTGTTAGCTGCTCTCGTAGTCGTAGTCGAAGCTACTCATCTGATCGGGGC 600 Query 592 AGATCTTATTCTCCAAGCTATGGGAGGAGAGGAAGGTCATCCTCGTCCTCACCCTTTTAT 651 |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||| Sbjct 601 AGATCTTATTCTCCAAGCTATGGGAGAAGAGGAAGGTCATCCTCGTACTCACCCTTCTAT 660 Query 652 AGGCGAGGCAGAT-CTTACTCTCCTTCGAGATCTCCATCGCCCGTTGATCGTTACTACAG 710 | ||| |||||| || ||||||||||||||||||| || || | |||||||||| |||| Sbjct 661 CGACGACGCAGATTCT-ACTCTCCTTCGAGATCTCCTTCACCTGATGATCGTTACAACAG 719 Query 711 GAGACGCGAGAGATCATACTCACCTTACTACAGGCGAAGGGACCGGTCCAGGTCCAGATC 770 ||||||||| |||||||||||||||||||||||||| |||||||||||||| | || Sbjct 720 GAGACGCGACAGATCATACTCACCTTACTACAGGCGGAGGGACCGGTCCAG----A--TC 773 Query 771 CTACTTGCCTTACTATAGAGCACGGGACAGATCACCTTACTACA-GACAGAGGTACAGGT 829 ||||| | | ||| ||||||||||||||||||||||||||||| | | ||||||||||| Sbjct 774 CTACTCACGTAACTGTAGAGCACGGGACAGATCACCTTACTACATG-CGGAGGTACAGGT 832 Query 830 CCAGATCCAGGTCATACTCGCCTCGCTACAGAGCACGTGACAGATCATACTCACCCTACT 889 ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| Sbjct 833 CCAGATCCAGGTCATACTCGCCTCGCTACAGAGCACGTGACCGATCATGCTCACCCTACT 892 Query 890 ACAGAGGAAGAGACCGGTCCTATTCGCCTTACTACCAAGGGAGAGACAGGTCCTACTCAC 949 |||| |||||||||||||| ||||| || ||||||||||||||||||| |||||||||| Sbjct 893 ACAGGGGAAGAGACCGGTCTTATTCACCCCACTACCAAGGGAGAGACAGATCCTACTCAC 952 Query 950 CTGAAAGTCGTCACTACAGAAGGTACAGGTCGGTATCGAGAAGCGTAAGCCCTGGGAGG- 1008 ||||||||||| ||||||||||| |||||||||||||| |||||||||||||||| ||| Sbjct 953 CTGAAAGTCGTTACTACAGAAGGCACAGGTCGGTATCGGGAAGCGTAAGCCCTGG-AGGG 1011 Query 1009 AGAAGCATGTCATGGAGCACATCCCCAAAGAAGGGAAGGAAAGAGAGCAGAAGCAAGTCT 1068 |||||||||||| | |||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 1012 AGAAGCATGTCACGTAGCATATCCCCAAGGAAGGGAAGGAAAGAGAGCAGAAGCAAGTCT 1071 Query 1069 CGCAGGCGCGACAGGCAATCTTCAATGAGTCATTCGAGGAGCGCAAGATCAAGCACCTCC 1128 || |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1072 CGGAGGCACGACAGGCAATCTTCAATGTGTCATTCGAGGAGCGCAAGATCAAGCACCTCC 1131 Query 1129 AGATCCGTCAGCCCATAACAGTCTCTA-------G---TTGACATCAATCGCTCACGTCT 1178 ||||||||||||||||||||||||||| | |||||||||||| ||||||||| Sbjct 1132 AGATCCGTCAGCCCATAACAGTCTCTACTTACTTGAAGTTGACATCAATCACTCACGTCT 1191 Query 1179 GTTGTTGTATTAAATATTTTGGGACACGTGTATTCCTTGTATTTG 1223 ||||||||||||| |||||||||| || ||||||||||||||| Sbjct 1192 GTTGTTGTATTAAGCATTTTGGGACTTGTCTATTCCTTGTATTTG 1236 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60090052365 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5