BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470764
Length=1706
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07430.1 | Symbols: HAI2 | highly ABA-induced PP2C gene 2 | ... 2026 0.0
> AT1G07430.1 | Symbols: HAI2 | highly ABA-induced PP2C gene 2
| chr1:2280835-2282828 REVERSE LENGTH=1817
Length=1817
Score = 2026 bits (1097), Expect = 0.0
Identities = 1499/1681 (89%), Gaps = 76/1681 (5%)
Strand=Plus/Plus
Query 1 GATATTTATTCAATTGCATGGTATAACC--------AA-AAACACTATTCGACTC-TTCt 50
||||||||||||| ||| |||||||||| || |||||||||||||||| || |
Sbjct 1 GATATTTATTCAACTGCGTGGTATAACCAAAAAAAAAAGAAACACTATTCGACTCTTTTT 60
Query 51 tt-tttttGtaataaaaataaaataaaaatCGGAGACAGATATTTCACCGGAAATTAATT 109
|| ||||||||||||| |||||||||| | ||||| ||||||||| ||||||||||||
Sbjct 61 TTGTTTTTGTAATAAACATAAAATAAATTTTGGAGAGAGATATTTCGTCGGAAATTAATT 120
Query 110 GACGATCAACAGATTCGTTACCGGAAAATCTAGT---GGAGACGATCGAGTTATGGCGGA 166
|||| |||| |||||||||||||||| || |||| || | ||||||||||||||||||
Sbjct 121 GACGTTCAAAAGATTCGTTACCGGAATATTTAGTAGAGGCGGCGATCGAGTTATGGCGGA 180
Query 167 TATTTGTTACGAAGACGAGACGTCTGCTTGTGAATCGAGACCGTCGTGGTCTAGCCGGAA 226
||||||||| |||||||||||||| ||||||||||| ||||||| |||||||||||||||
Sbjct 181 TATTTGTTATGAAGACGAGACGTCGGCTTGTGAATCAAGACCGTTGTGGTCTAGCCGGAA 240
Query 227 GTGGAGGATCGGTGTTCAGCGATTCAGGATGTCTCCGTCGGAGATGAATCCCACGGCTTC 286
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 241 GTGGAGGATCGGTGTCCAGCGATTCAGGATGTCTCCGTCGGAGATGAATCCCACGGCGTC 300
Query 287 GACGGCGGAGGAGGAGGAGGATAAGAAATCTGAGGGGATTTATAATAAGCGAAATAAACA 346
|||| | ||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 301 GACGAC---GGAGGAGGAGGAT---AAATCTGAAGGGATTTATAATAAGCGAAATAAACA 354
Query 347 AGAAGAGTACGATTTTATGAACTGTGCATCATCATCACC-AC-C--A-C-CTTCT----- 395
|||||||||||||||||||||||||||||| || ||||| | | | | || ||
Sbjct 355 AGAAGAGTACGATTTTATGAACTGTGCATCGTCGTCACCTTCTCAAAGCTCTCCTGAAGA 414
Query 396 -CAGAG-CTCTC-C-TGAAGAGAGTGACGTCTCCGTCTCCGATGGAAATTCATCGGTTAA 451
|||| | || | |||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 415 AGAGAGTGTATCACTTGAAGACAGTGACGTCTCTATCTCCGATGGAAATTCATCGGTTAA 474
Query 452 TGATATTACACTTATTCCTG-CTAAGAAGACGGTTAAAGAGACGGATCTGAGGCCGAGAT 510
|||| || || ||||||| | | |||||||||||||||||||||||||||||||||||||
Sbjct 475 TGATGTTGCAGTTATTCC-GTCGAAGAAGACGGTTAAAGAGACGGATCTGAGGCCGAGAT 533
Query 511 ACGGCTTCGCATCGGTGTGCGGGAGAAGAAGAGATATGGAAGATGCGGTGGCGATT-CAT 569
||||| ||||||||||||||||||||||||||||||||||||||||||| ||| || |||
Sbjct 534 ACGGCGTCGCATCGGTGTGCGGGAGAAGAAGAGATATGGAAGATGCGGTTGCG-TTACAT 592
Query 570 CCGTATTTTGTACGGAGACAAACGGAGTTTTCTCGAACAAGATGGCATTATTTTGGTGTT 629
|||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 593 CCGTCTTTTGTACGGAAACAAACGGAGTTTTCTCGAACAAGATGGCACTATTTTGGTGTT 652
Query 630 TACGACGGCCACGGCTGTTCTCACGTTGC-GTTGAGGTGTAAAGAGAGACTTCACGAGTT 688
||||||||||| ||||||||||||||||| | | ||||||||||||||||||||||||||
Sbjct 653 TACGACGGCCATGGCTGTTCTCACGTTGCGGCT-AGGTGTAAAGAGAGACTTCACGAGTT 711
Query 689 AGTGCAAGAAGAAGC-TCTCTCGGATAAGAAAGAAGAATGGAAGAAGACGATGGAGCGTA 747
||||||||||||||| | | |||||||||||||||||||||||||||| |||||||||||
Sbjct 712 AGTGCAAGAAGAAGCGT-TGTCGGATAAGAAAGAAGAATGGAAGAAGATGATGGAGCGTA 770
Query 748 GCTTCACGCGCT-TGGACAAGGAGGTTGTTCGTTGGGGTGAAACTGTGATGAGTGCTAAT 806
||||||| || | ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 771 GCTTCACACG-TATGGACAAAGAGGTTGTTCGTTGGGGTGAAACTGTGATGAGTGCTAAT 829
Query 807 TGCAGATGTGAGCTTCAAACTCCTGACTGTGACGCCGTTGGATCCACCGCAGTGGTTTCC 866
|| || |||||||||||||| || ||||||||||| |||||||||||||| || || |||
Sbjct 830 TGTAGGTGTGAGCTTCAAACGCCGGACTGTGACGCTGTTGGATCCACCGCCGTTGTCTCC 889
Query 867 GTCATTACGCCGGAGAAGATTATTGTTGCGAATTGTGGTGACTCAAGAGCAGTTCTTTGT 926
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 890 GTCATTACGCCGGAGAAGATCATTGTTGCGAATTGCGGTGACTCAAGAGCAGTTCTTTGT 949
Query 927 AGAAATGGTAAAGCAGTGCCTCTTTCCATAGATCACAAGCCGGATCGTCCGGATGAGCTG 986
|| |||||||||||||| |||||||| | |||||| ||||| ||||||||||||||||||
Sbjct 950 AGGAATGGTAAAGCAGTACCTCTTTCTACAGATCATAAGCCTGATCGTCCGGATGAGCTG 1009
Query 987 GATCGAATCCAAGAAGCAGGAGGACGAGTGATATACTGGGACGGTGCAAGAGTCTTAGGC 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 GATCGAATCCAAGAAGCAGGAGGACGAGTGATATACTGGGACGGTGCAAGAGTCTTAGGC 1069
Query 1047 GTTTTAGCCATGTCACGAGCCATAGGAGACAACTATTTAAAACCGTACGTGACTTCCGAA 1106
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 1070 GTTTTAGCCATGTCACGAGCCATAGGAGACAATTATTTAAAACCGTACGTCACTTCGGAG 1129
Query 1107 CCGGAAGTGACCGTGACGGATCGGACTGAGGAAGATGAGTTTCTGATTCTAGCAAGCG-A 1165
||||||||||| || |||||||||||||||||||||||||||||||||||||| | || |
Sbjct 1130 CCGGAAGTGACGGTTACGGATCGGACTGAGGAAGATGAGTTTCTGATTCTAGCGA-CGGA 1188
Query 1166 CGGGTTATGGGACGTTGTGACAAACGAGGCGGCGTGTTCGATGGTTCACATGTG-CTTCA 1224
|||| |||||||||| ||||| |||||||| |||||| ||||||| | |||||| || ||
Sbjct 1189 CGGGCTATGGGACGTAGTGACGAACGAGGCAGCGTGTACGATGGTGCGCATGTGTCT-CA 1247
Query 1225 ACAGAAAAAGTGGACACGGAAGACGGCGAGGAGAAACTCAAACACAG---ACTCCG-G-G 1279
||||||||||||| | |||||||||||||||||||| || || | | | | | |
Sbjct 1248 ACAGAAAAAGTGGTCGTGGAAGACGGCGAGGAGAAACACAGACTCCGGGGAGGAGGAGTG 1307
Query 1280 AACCAGGAGTGAA-GAAGAGGAGGAGAAGGTGGTGGGGTCAAGAAAGAACGGGAAGAAAG 1338
|| || || ||| ||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1308 AAGAAGAAGGGAAAGAAGAAGAGGAGAAGGTGGTGGGGTCAAGAAAGAACGGGAAGAGAG 1367
Query 1339 GAGAGATCACGGACAAAGCATGTACGGAGGCGTCAGTATTGCTGACGAAGCTGGCGTTGG 1398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1368 GAGAGATCACGGACAAAGCATGTACGGAGGCGTCAGTATTGCTGACGAAGCTGGCGTTGG 1427
Query 1399 CAAAACACAGTAGTGACAACGTAAGCGTCGTCGTTATTAATCTCAGAAGAAGAAGAAAGA 1458
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1428 CAAAACACAGTAGTGACAACGTAAGCGTCGTCGTTATTGATCTCAGAAGAAGAAGAAAGA 1487
Query 1459 GACACGTTGCTTGACACTAATCTCATCATCACTCTTACTCCAAC-TTTTTTGT-TTGTTT 1516
|||||||||||||||||||||||| ||||||||||||||||| | |||||||| ||||||
Sbjct 1488 GACACGTTGCTTGACACTAATCTCCTCATCACTCTTACTCCACCGTTTTTTGTGTTGTTT 1547
Query 1517 AAAATGATTCTTTTTCCTT----C-A------C--A--TCTTTGAACCCaaaagagagaa 1561
|||||||||||||| |||| | | | | ||||||||||||||||||||||
Sbjct 1548 AAAATGATTCTTTTACCTTGGGACGAAGGTAGCTCAAATCTTTGAACCCAAAAGAGAGAA 1607
Query 1562 aaaaaaatgggtgaa-t-taaaaaaaaaaTACCCGGTTTATTGAAAGCGGTTAAACCGGG 1619
||||||| | | | | ||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1608 AAAAAAA-GCATTAGGTCTAAAAAAAAAAC-CCCGGTTTACTGAAAGCGGTTAAACCGGG 1665
Query 1620 t 1620
|
Sbjct 1666 T 1666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84336915600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5