BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470774 Length=1453 Score E Sequences producing significant alignments: (Bits) Value AT1G07480.1 | Symbols: | Transcription factor IIA, alpha/beta ... 2104 0.0 AT1G07470.1 | Symbols: | Transcription factor IIA, alpha/beta ... 1971 0.0 > AT1G07480.1 | Symbols: | Transcription factor IIA, alpha/beta subunit | chr1:2296023-2299470 REVERSE LENGTH=1972 Length=1972 Score = 2104 bits (1139), Expect = 0.0 Identities = 1368/1473 (93%), Gaps = 38/1473 (3%) Strand=Plus/Plus Query 1 CTCTCGATCTCTGATCTCTCTGTCTTCTGTCTACGCTTCGTCGCCGGCCGATCTCTCCCA 60 |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| Sbjct 9 CTCTCGATCTCTGATCTCCCTGTCTTCTGTCTACGCTTCGTCGCCGGCCGATTTCTCCCA 68 Query 61 GACTCCGTCTTACCTCCT-C---CGAAA-TC-AGATTCCCGGAGGACG-AATTTGGTTTT 113 |||| ||||||||| ||| | ||||| | |||||||||||||||| |||| | |||| Sbjct 69 GACT-CGTCTTACCGCCTCCGGTCGAAACCCTAGATTCCCGGAGGACGAAATTCGTTTTT 127 Query 114 TCGCCGGAGATTAAATTAAGGAGATTTGAGAGGCTGAGAAGATGGGTACAACTACGACAA 173 |||||||| | |||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 128 TCGCCGGA-ACTAAATTAAGGAGATTTGAGAGGCT------ATGGGTACAACAACGACAA 180 Query 174 CGAGTGCTGTGTATATTCATGTTATCGAGGATGTCGTCAACAAAGTCCGAGAGGAGTTTA 233 | || ||||||||||| ||||||||||||||||||||||||||||| || |||||||| | Sbjct 181 CAAGCGCTGTGTATATCCATGTTATCGAGGATGTCGTCAACAAAGTTCGTGAGGAGTTCA 240 Query 234 TTAACAACGGAGGTCCTGGCGAGAGTGTTCTCAGCGAGCTTCAAGGAATTTGGGAGACGA 293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TTAACAACGGAGGTCCTGGCGAGAGTGTTCTCAGCGAGCTTCAAGGAATTTGGGAGACGA 300 Query 294 AGATGATGCAAGCTGGAGTCTTGAATGGACCAATAGAGAGGTCATCGGCTCAGAAGCCAA 353 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 AGATGATGCAAGCCGGAGTCTTGAATGGACCAATAGAGAGGTCATCGGCTCAGAAGCCAA 360 Query 354 CACCTGGAGGTCCATTGACTCATGATTTGAATGTTCCCTATGAAGGTACAGAGGAGTATG 413 ||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||| | Sbjct 361 CACCTGGTGGTCCACTGACTCATGATTTGAATGTTCCTTATGAAGGTACAGAGGAGTACG 420 Query 414 AGACTCCCACTGCTGAAATGCTCTTTCCTCCGACACCATTGCAGACTCCCCTTCCAACGC 473 ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 421 AGACTCCCACTGCTGAAATGCTCTTCCCTCCTACACCATTGCAGACTCCCCTTCCAACGC 480 Query 474 CGCTTCCGGGTACTGCTGATAACTCATCCATGTATAACATCCCTACCGGCTCAAGTGATT 533 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 CGCTTCCCGGTACTGCTGATAACTCATCCATGTATAACATCCCTACCGGCTCAAGTGATT 540 Query 534 ATACAACTCCTGGAACTGAGAATGGAGTCAACCTTGATGTTAAAGGAAGACCCAGTCCTT 593 || | ||||||||||||||||||||||||||| |||||||||||| |||||| ||||||| Sbjct 541 ATCCCACTCCTGGAACTGAGAATGGAGTCAACATTGATGTTAAAGCAAGACCTAGTCCTT 600 Query 594 ATATGCCACCGCCTTCTCCGTGGGCAAATCCTAGACTTGATGTCAATGTTGCTTATGTGG 653 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 601 ATATGCCACCGCCTTCTCCGTGGACAAATCCTAGACTTGATGTCAATGTTGCTTATGTGG 660 Query 654 ATGGCCGTGATGAGCCTGAGAGAGGAAACTCTAACCAGCAGTTTACGCAGGATTTATTTG 713 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 ATGGCCGTGATGAGCCTGAGAGAGGAAACTCTAACCAGCAGTTTACGCAGGATTTATTTG 720 Query 714 TGCCATCCTCTGGGAAACGAAAACGTGACGATTCTTCTGGACATTATCAAAATGGTGGAT 773 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 721 TGCCATCCTCTGGGAAACGAAAACGTGATGATTCTTCTGGACATTATCAAAATGGTGGAT 780 Query 774 CTATACCTCAACAGGATGGTGCAAGCGATACTATTCCTAAGGCAAACTTTGAGTGTGATA 833 ||||||||||||||||||||||| ||||| |||| ||| |||||||||||||||||||| Sbjct 781 CTATACCTCAACAGGATGGTGCAGGCGATGCTATCCCTGAGGCAAACTTTGAGTGTGATG 840 Query 834 CACTCCGCATAACCTCTGTTGGCGATAGAAAGGTCCCACGAGACTTCTTCTGCTCATCAT 893 || |||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||| Sbjct 841 CATTCCGCATAACCTCTATTGGCGATAGAAAGGTACCACGAGACTTCTTCAGCTCATCAT 900 Query 894 CCAAGATTCCTCAAGTTGATGGGCCAATGCCTGACCCTTATGATGAAATGCTGTCCACCC 953 | ||||||||||| |||||||||||||||||||||||||||||||||||||| || || | Sbjct 901 CGAAGATTCCTCAGGTTGATGGGCCAATGCCTGACCCTTATGATGAAATGCTCTCTACAC 960 Query 954 CAAATATATACAGTTATCAAGGACCCAGTGAAGACTTTAACGAGGCCAGAACTCCTGCTC 1013 |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 961 CAAATATATATAGTTATCAAGGACCCAGTGAAGAGTTTAACGAGGCCAGAACTCCTGCTC 1020 Query 1014 CAAACGACATCCAAACAAGCACTCCTGTTACTGTACAAAACAATATCGTTGAAGATGATG 1073 ||||||| |||||||| |||||||||||| ||||||||||| ||||| |||||||||||| Sbjct 1021 CAAACGAGATCCAAACGAGCACTCCTGTTGCTGTACAAAACGATATCATTGAAGATGATG 1080 Query 1074 AAGAGCTGTTGAACGAAGATGATGATGATGACGAGTTGGACGACCTAGAAAGTGGCGAGG 1133 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1081 AAGAGCTGTTGAACGAAGATGATGATGATGACGAGTTGGACGACCTAGAAAGTGGCGAGG 1140 Query 1134 ATATGAACACGCAACATCTGGTTCTAGCTCAATTTGATAAGGTGACTCGCACAAAGAGCA 1193 |||||||||| ||||| |||||| ||||||||||||| |||||||| ||||||||||||| Sbjct 1141 ATATGAACACACAACACCTGGTTTTAGCTCAATTTGACAAGGTGACGCGCACAAAGAGCA 1200 Query 1194 GGTGGAAGTGCAATCTGAAAGACGGGATCATGCATATAAACGATAAGGACATTCTCTTCA 1253 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1201 GGTGGAAGTGCAGTCTGAAAGACGGGATCATGCATATAAACGATAAGGACATTCTCTTCA 1260 Query 1254 ACAAAGCAACAGGCGAGTTCGACTTCTGATCTTGACACTAG-AA--ATGCTTTTAGAAAA 1310 |||||||| |||||||||| ||||||||||||| ||||||| || |||||| ||| ||| Sbjct 1261 ACAAAGCAGCAGGCGAGTTTGACTTCTGATCTTAACACTAGCAATGATGCTTCTAGGAAA 1320 Query 1311 GTCACAGTCCTTCAAATGTTCAGTGTCTTTCTTTTTACCTTACGGTTTA-GA--GAC--A 1365 ||| | | | ||||||| |||||||||||||||||||||| | |||| || ||| | Sbjct 1321 GTC-C--T--T-CAAATGTCCAGTGTCTTTCTTTTTACCTTATGATTTAAGACCGACCGA 1374 Query 1366 T-GAT---T-A-T-TT-ATGGGAAAGTGTACTCTGGTTGGCTTGTTGTACAAAAAGAAAA 1417 || | | | || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1375 GAGAGACATGAGTATTCATGGGAAAGTGTACTCTGGTTGGCTTGTTGTACAAAAAGAAAA 1434 Query 1418 GATTTTTCCTGTCGAAGAAGGCGTATCAACTTT 1450 | |||||| |||||||||||||||||||||||| Sbjct 1435 GTTTTTTC-TGTCGAAGAAGGCGTATCAACTTT 1466 > AT1G07470.1 | Symbols: | Transcription factor IIA, alpha/beta subunit | chr1:2291457-2294588 FORWARD LENGTH=1538 Length=1538 Score = 1971 bits (1067), Expect = 0.0 Identities = 1343/1470 (91%), Gaps = 43/1470 (3%) Strand=Plus/Plus Query 8 TCTCTGATCTCTCTGTCTTCTGTCTACGCTTCGTCGCCGGCCGATCTCTCCCAGACTCCG 67 |||||| ||| |||| ||||||||||||||||| | ||||||| | |||||||||| Sbjct 38 TCTCTG-TCT-TCTGAGTTCTGTCTACGCTTCGT---C-GCCGATCCCGGCCAGACTCCG 91 Query 68 TCTTACCTCCTCCGAAA-TC-AGATTCCCGGAGGACG-AATTTGGTTTTTCGCCGGAGAT 124 ||||||| | | ||| | |||||||||||||||| |||| | |||||||||||| | Sbjct 92 TCTTACCGGC-AC-AAACCCTAGATTCCCGGAGGACGAAATTCGTTTTTTCGCCGGA-AC 148 Query 125 TAAATTAAGGAGATTTGAGAGGCTGAGAAGATGGGTACAACTACGACAACGAGTGCTGTG 184 |||||||||||||||||||||||| ||||||||||| |||||||| || |||||| Sbjct 149 TAAATTAAGGAGATTTGAGAGGCT------ATGGGTACAACAACGACAACAAGCGCTGTG 202 Query 185 TATATTCATGTTATCGAGGATGTCGTCAACAAAGTCCGAGAGGAGTTTATTAACAACGGA 244 ||||| ||||||||||||||||||||||||||||| || |||||||| |||||||||||| Sbjct 203 TATATCCATGTTATCGAGGATGTCGTCAACAAAGTTCGTGAGGAGTTCATTAACAACGGA 262 Query 245 GGTCCTGGCGAGAGTGTTCTCAGCGAGCTTCAAGGAATTTGGGAGACGAAGATGATGCAA 304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 263 GGTCCTGGCGAGAGTGTTCTCAGCGAGCTTCAAGGAATTTGGGAGACGAAGATGATGCAA 322 Query 305 GCTGGAGTCTTGAATGGACCAATAGAGAGGTCATCGGCTCAGAAGCCAACACCTGGAGGT 364 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 323 GCCGGAGTCTTGAATGGACCAATAGAGAGGTCATCGGCTCAGAAGCCAACACCTGGTGGT 382 Query 365 CCATTGACTCATGATTTGAATGTTCCCTATGAAGGTACAGAGGAGTATGAGACTCCCACT 424 ||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 383 CCACTGACTCATGATTTGAATGTTCCTTATGAAGGTACAGAGGAGTACGAGACTCCCACT 442 Query 425 GCTGAAATGCTCTTTCCTCCGACACCATTGCAGACTCCCCTTCCAACGCCGCTTCCGGGT 484 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 443 GCTGAAATGCTCTTCCCTCCTACACCATTGCAGACTCCCCTTCCAACGCCGCTTCCCGGT 502 Query 485 ACTGCTGATAACTCATCCATGTATAACATCCCTACCGGCTCAAGTGATTATACAACTCCT 544 ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 503 ACTGCTGATAACTCATCCATGTATAACATCCCTACCGGCTCAAGTGATTATCCCACTCCT 562 Query 545 GGAACTGAGAATGGAGTCAACCTTGATGTTAAAGGAAGACCCAGTCCTTATATGCCACCG 604 ||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||| Sbjct 563 GGAACTGAGAATGGAGTCAACATTGATGTTAAAGCAAGACCTAGTCCTTATATGCCACCG 622 Query 605 CCTTCTCCGTGGGCAAATCCTAGACTTGATGTCAATGTTGCTTATGTGGATGGCCGTGAT 664 |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 623 CCTTCTCCGTGGACTAATCCTAGACTTGATGTCAATGTTGCTTATGTGGATGGCCGTGAT 682 Query 665 GAGCCTGAGAGAGGAAACTCTAACCAGCAGTTTACGCAGGATTTATTTGTGCCATCCTCT 724 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 683 GAGCCTGAGAGAGGAAACTCTAATCAGCAGTTTACGCAGGATTTATTTGTGCCATCTTCT 742 Query 725 GGGAAACGAAAACGTGACGATTCTTCTGGACATTATCAAAATGGTGGATCTATACCTCAA 784 ||||||||||||||||| ||||| |||| ||| ||||||||||||||||||||||||||| Sbjct 743 GGGAAACGAAAACGTGATGATTCATCTGCACACTATCAAAATGGTGGATCTATACCTCAA 802 Query 785 CAGGATGGTGCAAGCGATACTATTCCTAAGGCAAACTTTGAGTGTGATACACTCCGCATA 844 || ||||||||||||||| |||| ||| ||||||||||||| |||| | ||||||| ||| Sbjct 803 CAAGATGGTGCAAGCGATGCTATCCCTGAGGCAAACTTTGAATGTGCTGCACTCCGTATA 862 Query 845 ACCTCTGTTGGCGATAGAAAGGTCCCACGAGACTT-CTTCTGCTCATCATCCAAGATTCC 903 |||| |||||||||||||||| |||||||||| || || |||||||||| |||||||| Sbjct 863 ACCTATGTTGGCGATAGAAAGATCCCACGAGATTTGATT-GGCTCATCATCGAAGATTCC 921 Query 904 TCAAGTTGATGGGCCAATGCCTGACCCTTATGATGAAATGCTGTCCAC-CCCAAATATAT 962 |||||||||||||||||||||||||| |||||||||||| ||||||| ||| ||||||| Sbjct 922 CCAAGTTGATGGGCCAATGCCTGACCCGTATGATGAAATGTTGTCCACACCC-AATATAT 980 Query 963 ACAGTTATCAAGGACCCAGTGAAGACTTTAACGAGGCCAGAACTCCTGCTCCAAACGACA 1022 |||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||| | Sbjct 981 ACAGTTATCAAGGACCCAATGAAGAGTTTAATGAGGCCAGAACTCCTGCTCCAAACGAAA 1040 Query 1023 TCCAAACAAGCACTCCTGTTACTGTACAAAACAATATCGTTGAAGATGATGAAGAGCTGT 1082 ||||||| |||||||||||| |||||| |||| ||||| ||||||||||||||||||||| Sbjct 1041 TCCAAACGAGCACTCCTGTTGCTGTACCAAACGATATCATTGAAGATGATGAAGAGCTGT 1100 Query 1083 TGAACGAAGATGATGATGATGACGAGTTGGACGACCTAGAAAGTGGCGAGGATATGAACA 1142 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1101 TGAACGAAGATGATGATGATGACGAGTTGGACGACCTAGAAAGTGGCGAGGATATGAACA 1160 Query 1143 CGCAACATCTGGTTCTAGCTCAATTTGATAAGGTGACTCGCACAAAGAGCAGGTGGAAGT 1202 | ||||| |||||| ||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 1161 CACAACACCTGGTTTTAGCTCAATTTGACAAGGTGACGCGCACAAAGAGCAGGTGGAAGT 1220 Query 1203 GCAATCTGAAAGACGGGATCATGCATATAAACGATAAGGACATTCTCTTCAACAAAGCAA 1262 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1221 GCAGTCTGAAAGACGGGATCATGCATATAAACGATAAGGACATTCTCTTCAACAAAGCAA 1280 Query 1263 CAGGCGAGTTCGACTTCTGATCTTGACACTAGAAATGCTTTTAGAAAAGTCACAGTCCTT 1322 |||||||||||||||||||||||||||||||| ||||||| ||| ||||||| ||||||| Sbjct 1281 CAGGCGAGTTCGACTTCTGATCTTGACACTAGTAATGCTTCTAGGAAAGTCAGAGTCCTT 1340 Query 1323 CAAATGTTCAG-TGTCTTTCTTTTTACCTTACGGTTTAGA--GAC-----A-TGA----- 1368 ||||||| | | ||||||||||| ||||||| | |||||| ||| | ||| Sbjct 1341 CAAATGT-CGGATGTCTTTCTTTGTACCTTATGATTTAGACCGACCTCCGAGTGAGAGAC 1399 Query 1369 -T--T-ATTTATGGGAA-AGTGTACTCTGGTTGGCTTGTTGTACAAAAAGAAAAGATTTT 1423 | | ||||||||||| | |||||||||||||||||||||||||||||||| ||||||| Sbjct 1400 ATGATTATTTATGGGAATA-TGTACTCTGGTTGGCTTGTTGTACAAAAAGAACAGATTTT 1458 Query 1424 TCCTGTCGAAGAAGGCGTATCAACTTTGAC 1453 ||| | |||||||||| ||||||||||||| Sbjct 1459 TCCGGCCGAAGAAGGCTTATCAACTTTGAC 1488 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71636177715 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5