BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470785
Length=2297
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07590.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 3277 0.0
AT1G07610.1 | Symbols: MT1C | metallothionein 1C | chr1:2341542... 370 3e-101
AT1G07600.1 | Symbols: MT1A, MT1, LSR4, MT-Q, ATMT-2, ATMT-Q, A... 239 1e-61
AT5G56795.1 | Symbols: MT1B | metallothionein 1B | chr5:2297204... 167 5e-40
> AT1G07590.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:2336523-2339391 REVERSE LENGTH=2361
Length=2361
Score = 3277 bits (1774), Expect = 0.0
Identities = 2159/2336 (92%), Gaps = 62/2336 (3%)
Strand=Plus/Plus
Query 1 gaaatcacaaaagcatcagaagaagaagaagaaagtacaa-a---aatcaatcaaagaga 56
|||||||||||||||||| ||||||||||||||| ||||| | |||||||||||||||
Sbjct 1 GAAATCACAAAAGCATCATAAGAAGAAGAAGAAACTACAATAGTTAATCAATCAAAGAGA 60
Query 57 agtaagagaaaTGGCAGGTTCTAACTGTGGATGTGGCTCCTCCTGCAAATGTGGTGACTC 116
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGTAAGAGAAATGGCAGATTCTAACTGTGGATGTGGCTCCTCCTGCAAATGTGGTGACTC 120
Query 117 TTGCAGTTGCGAGAAGAACTACAACCAGGAGTGCGACGACTGTAGCTGTGGATCAAACTG 176
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 121 TTGCAGTTGCGAGAAGAACTACAACAAGGAGTGCGACAACTGTAGCTGTGGATCAAACTG 180
Query 177 CAGCTGTGGGTCAAACTGTAACTGTTGATG-AA--ATTA---TC----AT--TATATATC 224
|||||||||||||||||||||||||||||| || |||| || || |||||||
Sbjct 181 CAGCTGTGGGTCAAACTGTAACTGTTGATGAAATTATTATGGTCTAAAATCATATATATG 240
Query 225 CCAGAAAAATTGGGGAAAA-ACTGTGTTTTATGCTAAGAGATGTTGTGTGTG-TGTTGGA 282
|||||||||||||||||| | ||||||||||||||||||||| |||||||| |||||||
Sbjct 241 GCAGAAAAATTGGGGAAAATA-TGTGTTTTATGCTAAGAGATG-TGTGTGTGTTGTTGGA 298
Query 283 ATAAAGATGTGACCGTTGTGTTGCGTAAAT-AACTCTCTTAAGCTTTGACTTTTTTCCAG 341
||||||| |||||||||||||||||| || ||||||||||||||||||| |||| ||||
Sbjct 299 ATAAAGACGTGACCGTTGTGTTGCGT--ATCAACTCTCTTAAGCTTTGAC-TTTTCCCAG 355
Query 342 CTTTGTATTTTCCTATATGTGGTGGTGATGGTGTGATTATGTAATGTTTTCATAT-TCAA 400
||||||||||||| ||||| |||| ||||||||||| |||||||||||||||| | ||
Sbjct 356 CTTTGTATTTTCC--TATGT-ATGGTAATGGTGTGATTGTGTAATGTTTTCATATGT-AA 411
Query 401 CGT-aaaaaaaTATTTATGTG-TATTGACTTTTGTGACTATTAAGATTTGTCTGTCTCTG 458
||| ||||||||||||||||| ||||||||||||||||| |||||||||| | | |||
Sbjct 412 CGTAAAAAAAATATTTATGTGACATTGACTTTTGTGACTACTAAGATTTGTATATGTCTC 471
Query 459 CTCC-TTTTCTTATTTAGGATATAAGCTCAATCAGCT-AATTAATCATGAACAATTTAGG 516
|||| |||| ||||||||||| |||| |||||||||| |||||||||| ||||||||| |
Sbjct 472 CTCCGTTTT-TTATTTAGGATTTAAGTTCAATCAGCTAAATTAATCATAAACAATTTAAG 530
Query 517 TAAATATT-AT-T-A-TATAAGTAAACCATGTACTTACTTATCGGGCCTTA-A-G----T 566
|||||||| || | | | |||| ||||| || || |||||||||||||| | | |
Sbjct 531 TAAATATTCATATGAGAAGAAGTCAACCA--TA-TT-CTTATCGGGCCTTATATGTTAAT 586
Query 567 GTTGAAAGTTTACGGGCCAGTAAGGTCCC-AAAAAGAAGAAGAAATGAGATCTATAATTG 625
||| |||| |||||||||||||||||||| ||||||||||||| |||||||| || ||||
Sbjct 587 GTTAAAAGGTTACGGGCCAGTAAGGTCCCAAAAAAGAAGAAGAGATGAGATCCATTATTG 646
Query 626 CGT-TGGTGAGGCAGCGAGAATGTTTCGTTGAGGCAATACGTCGAACAACTTGCGTGCCA 684
| | | ||||||| ||||||| ||||||| ||||||| |||||||||||||||||| |
Sbjct 647 C-TCTCATGAGGCAACGAGAATATTTCGTTCAGGCAATTCGTCGAACAACTTGCGTGGC- 704
Query 685 TCTTCGCCTGCGGTGAATCAAACTAATTTCCAAGCTTCAAGCTTTCTCACTACCCTAATC 744
| || |||||| ||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 705 -C-TCACCTGCGTTGAATCAAACTAACTTCCAAGCTTCGAGCTTTCTCACTACCCTAATA 762
Query 745 TCTTCGAAGAAATCTCCGGAAGAGACATCATGTCTCGGGTCGGATGTAGAAGAAGAAGAG 804
|||||||||||||||||||||||| | ||||| |||| ||||| | ||||||||| |||
Sbjct 763 TCTTCGAAGAAATCTCCGGAAGAG--A-CATGTATCGGATCGGAGGAAGAAGAAGAGGAG 819
Query 805 CCCAACAAGTGTTTGTCTGTGAGAATCGAGAAGCTCCCAAAGGGCGTAACTGTTGGGTCT 864
|||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||
Sbjct 820 CCCAACAAGTGTTTGTCTTTGAGAATCGAGAAGCTTCCGAAGGGCGTAACTGTTGGGTCT 879
Query 865 GCGTTACAGAGCTGGATGGGTGATGGGTTTCCAGTTCATGGTGGAGATGTTTATCACGCT 924
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 GCTTTACAGAGCTGGATGGGTGATGGGTTTCCAGTTCATGGTGGAGATGTTTATCACGCC 939
Query 925 ATTAATCGATTGAGGAAGCTCGGACGAAATAAACGTGCCCTTGAGTTGATGGAGTGGATA 984
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 940 ATTAATCGATTGAGGAAACTCGGACGAAACAAACGTGCCCTTGAGTTGATGGAGTGGATA 999
Query 985 ATCAGGGAAAGACCTTACCGTCCCGGTGAGCTAGAATACTCATACTTGCTGGAATTCACA 1044
|||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||| |||
Sbjct 1000 ATCAGGGAAAGACCTTACCGTCTTGGTGAGCTAGAGTACTCTTACTTGCTCGAATTTACA 1059
Query 1045 GTCAAACTTCATGGCGTCTCGCAAGGCGAAAAGCTTTTTACCCGTGTCCCTCAAGAGTTT 1104
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1060 GTCAAACTTCATGGCGTCTCGCAAGGAGAAAAGCTATTTACCCGTGTCCCTCAAGAGTTT 1119
Query 1105 CAGAACGAGCTTCTTTACAATAACCTTGTGATTGCTTGTTTAGACCAAGGTGTCATAAGG 1164
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1120 CAGAACGAGCTTCTTTACAACAACCTTGTGATTGCTTGTTTAGACCAAGGTGTCATAAGG 1179
Query 1165 CTTGCACTAGCGTATATGAAGAAGATGAGGGAACTTGGTTATCGTACATCCCATTTGGTC 1224
||||| |||| |||||||||||||||||| ||||| ||||| ||||| ||||||||||||
Sbjct 1180 CTTGCGCTAGAGTATATGAAGAAGATGAGAGAACTCGGTTACCGTACTTCCCATTTGGTC 1239
Query 1225 TACAACCGTCTTATAATTCGCAACTCAGCTCCCGGACGAAGAAAGCTAATCGCGAAAGAC 1284
|||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||
Sbjct 1240 TACAACCGTCTTATAATTCGCAACTCTGCTCCCGGACGAAGAAAGCTAATAGCAAAAGAC 1299
Query 1285 CTTGCGCTCATGAAAGCTGACAAGGCCACTCCTCATGTCTCAACATATCATATCTTGATG 1344
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1300 CTTGCGCTCATGAAAGCTGACAAGGCGACTCCTCATGTCTCAACGTATCATATCTTGATG 1359
Query 1345 AAGCTTGAGGCTAATGAACATAACATCGACGGGGTGCTAAATGCTTTTGATGGTATGAAG 1404
||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 1360 AAGCTTGAGGCTAATGAACATAACATCGATGGGGTGCTGAAGGCTTTTGATGGTATGAAG 1419
Query 1405 AAAGCTGGAGTTGAGCCGAATGAGGTTTCTTACTGTATATTGGCTATGGCACATGCTGTT 1464
||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1420 AAAGCGGGAGTTGAGCCAAATGAGGTGTCTTACTGTATATTGGCTATGGCACATGCTGTT 1479
Query 1465 GCGAGGTTGTATACAGTTGCGGAAGCCTATACCGAGGAAATAGAAAAATCTGTCAC-GGG 1523
||||| |||||||||||||| |||||||||||||||||||||||||||||| |||| |||
Sbjct 1480 GCGAGATTGTATACAGTTGCAGAAGCCTATACCGAGGAAATAGAAAAATCTATCACAGGG 1539
Query 1524 GAATAATTGGTCGACCTTAGATATATTGATGATTCTATATGGGCGTTTAGGGAAAGAAAA 1583
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1540 G-ATAATTGGTCGACCTTGGATATATTGATGATTCTATATGGGCGTTTAGGGAAAGAAAA 1598
Query 1584 GGAGCTAGTAAGAACGTGGAATGTCATCAGAGGGTTTCATCATGTTAGATCCAAGAGTTA 1643
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1599 AGAGCTAGCGAGAACGTGGAATGTCATAAGAGGGTTTCATCATGTTAGATCCAAGAGTTA 1658
Query 1644 CTTACTGGCAACTGAAGCTTTTGCGCGAGTAGGGAACCTTGATAGAGCGGAAGAGCTCTG 1703
|||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1659 CTTACTGGCAACCGAAGCGTTTGCTCGAGTAGGGAACCTTGATAGAGCGGAAGAGCTCTG 1718
Query 1704 GTTAGAGATGAAAAACGTAAGAGGACTCAAAGAAACTGAGCAATTCAACTCTCTGCTCTC 1763
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1719 GTTAGAGATGAAAAACGTAAAAGGACTTAAAGAAACTGAGCAATTCAACTCTCTGCTCTC 1778
Query 1764 GGTATACTGCAAAGACGGTTTGATAGAGAAGGCAATAGGTGTATTCCGCGAGATGATGGG 1823
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1779 GGTATACTGCAAGGACGGTTTGATAGAGAAGGCAATTGGTGTATTCCGCGAGATGACAGG 1838
Query 1824 AGACGGGTTTAAGCCTAATTCCATAACGTATAGACATCTTGCTCTAGGATGTGCTAAAGC 1883
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1839 AAACGGGTTTAAGCCTAATTCCATAACGTATAGACATCTTGCTCTTGGATGTGCTAAAGC 1898
Query 1884 CAAACTGATGAAGGAAGCTCTCAAAAACATTGAAATGGGTTCGAATCTAAAGACGAGCAA 1943
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1899 CAAACTGATGAAGGAAGCTCTCAAAAACATTGAGATGGGTTTGAATCTAAAGACGAGCAA 1958
Query 1944 TAGCATAAGAAGCTCAACGCCGTGGCTGGAGACGACTCTATCGATCATCGAGTGTTTTGC 2003
|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1959 AAGCATAGGAAGCTCAACGCCGTGGCTGGAGACGACTCTATCGATCATAGAGTGTTTTGC 2018
Query 2004 AGAGAAAGGTGATGTTGAGAACTCAGAGAAACTGTTTGAAGAGGTGAAGAATGCAAAGTA 2063
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2019 AGAGAAAGGTGATGTAGAGAACTCAGAGAAACTGTTTGAAGAGGTGAAGAATGCAAAGTA 2078
Query 2064 TAATAGGTATCCGTTTGTGTACAACGCTCTGTTCAAAGCTTATGTGAAGGCTAAAGTGTA 2123
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2079 TAATAGGTATGCGTTTGTGTACAACGCTCTGTTCAAAGCTTATGTGAAGGCTAAAGTGTA 2138
Query 2124 TGACCCTAATCTGTTCAAGAGGATGGTTCTAGGCGGAGCTAGGCCTGATGCTGAGTCATA 2183
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2139 TGACCCTAATCTGTTCAAGAGGATGGTTCTAGGTGGAGCTAGGCCTGATGCTGAGTCATA 2198
Query 2184 CAGTTTGTTGAAACTTGTTGAACAATATAACCCCTGACTCGATCAAGTCTGCTCCAGttt 2243
|||||||||||||||||| ||||||||||| ||||||| | ||||||||||||||| |||
Sbjct 2199 CAGTTTGTTGAAACTTGTCGAACAATATAAGCCCTGACACAATCAAGTCTGCTCCAATTT 2258
Query 2244 tttt-ATTTGATTGGAT-GATAGTGACTTGTGGGTTTAAGAAGATGTTTGTAAAAG 2297
|||| ||| |||||||| | ||||||||||||||||||||||| |||| |||||||
Sbjct 2259 TTTTGATT-GATTGGATAGTTAGTGACTTGTGGGTTTAAGAAGTTGTTCGTAAAAG 2313
> AT1G07610.1 | Symbols: MT1C | metallothionein 1C | chr1:2341542-2342123
FORWARD LENGTH=457
Length=457
Score = 370 bits (200), Expect = 3e-101
Identities = 277/312 (89%), Gaps = 13/312 (4%)
Strand=Plus/Plus
Query 7 aca-aaagcatcagaagaagaagaag-aaagtacaaaaatcaatcaaagagaagtaagag 64
||| |||||||||||||||||| ||| ||| ||| |||||||||||||||||||||||||
Sbjct 1 ACATAAAGCATCAGAAGAAGAAAAAGAAAACTAC-AAAATCAATCAAAGAGAAGTAAGAG 59
Query 65 aaaTGGCAGGTTCTAACTGTGGATGTGGCTCCTCCTGCAAATGTGGTGACTCTTGCAGTT 124
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 60 AAATGGCAGGTTCTAACTGTGGATGTGGCTCCTCCTGCAAATGTGGTGATTCGTGCAGTT 119
Query 125 GCGAGAAGAACTACAACCAGGAGTGCGACGACTGTAGCTGTGGATCAAACTGCAGCTGTG 184
||||||||||||||||| ||||||| || |||||||||||||||||||||||||||| |
Sbjct 120 GCGAGAAGAACTACAACAAGGAGTGTGATAACTGTAGCTGTGGATCAAACTGCAGCTGCG 179
Query 185 GGTCAAACTGTAACTGTTGATGAAATTATCATTATA-TATC---CCA-GAAAAATTGGGG 239
|||||| ||||||||||||| |||||||||| || | || ||| | ||||| |||
Sbjct 180 GGTCAAGCTGTAACTGTTGAAGAAATTATCAGCATGGTCTCAAACCAAGGAAAAT-GGGA 238
Query 240 AAAAACTGTGTTTTATGCTAAGAGATGTTGTGTGTGTGTTGGAATAAAGA-TGTGACCGT 298
||||| |||||||||||||||||||| || ||||| |||||||||||||| | || | |
Sbjct 239 AAAAAATGTGTTTTATGCTAAGAGATCTT-TGTGTATGTTGGAATAAAGACT-TGGCA-T 295
Query 299 TGTGTTGCGTAA 310
||||||||||||
Sbjct 296 TGTGTTGCGTAA 307
> AT1G07600.1 | Symbols: MT1A, MT1, LSR4, MT-Q, ATMT-2, ATMT-Q,
ATMT1 | metallothionein 1A | chr1:2338904-2339321 REVERSE LENGTH=138
Length=138
Score = 239 bits (129), Expect = 1e-61
Identities = 135/138 (98%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 67 ATGGCAGGTTCTAACTGTGGATGTGGCTCCTCCTGCAAATGTGGTGACTCTTGCAGTTGC 126
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAGATTCTAACTGTGGATGTGGCTCCTCCTGCAAATGTGGTGACTCTTGCAGTTGC 60
Query 127 GAGAAGAACTACAACCAGGAGTGCGACGACTGTAGCTGTGGATCAAACTGCAGCTGTGGG 186
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 GAGAAGAACTACAACAAGGAGTGCGACAACTGTAGCTGTGGATCAAACTGCAGCTGTGGG 120
Query 187 TCAAACTGTAACTGTTGA 204
||||||||||||||||||
Sbjct 121 TCAAACTGTAACTGTTGA 138
> AT5G56795.1 | Symbols: MT1B | metallothionein 1B | chr5:22972042-22972449
REVERSE LENGTH=171
Length=171
Score = 167 bits (90), Expect = 5e-40
Identities = 98/102 (96%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 75 TTCTAACTGTGGATGTGGCTCCTCCTGCAAATGTGGTGACTCTTGCAGTTGCGAGAAGAA 134
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 34 TTCTAATTGTGGATGTGGCTCCTCCTGCAAATGTGGTGACTCTTGCAGTTGCGAGAAGAA 93
Query 135 CTACAACCAGGAGTGCGACGACTGTAGCTGTGGATCAAACTG 176
||||||| ||||||||||| ||||||||||||| ||||||||
Sbjct 94 CTACAACAAGGAGTGCGACAACTGTAGCTGTGGGTCAAACTG 135
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114005437695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5