BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470791 Length=3334 Score E Sequences producing significant alignments: (Bits) Value AT1G07650.2 | Symbols: | Leucine-rich repeat transmembrane pro... 4896 0.0 > AT1G07650.2 | Symbols: | Leucine-rich repeat transmembrane protein kinase | chr1:2359673-2366447 REVERSE LENGTH=3231 Length=3231 Score = 4896 bits (2651), Expect = 0.0 Identities = 3047/3235 (94%), Gaps = 40/3235 (1%) Strand=Plus/Plus Query 95 ATTTTATTGTTTTGTATAGAAAAGATGATTTCCTTACATCGCATATATTTCATCATCGTC 154 |||||||| |||||||||||||| ||||| | ||||||||||||||||||||||||||| Sbjct 1 ATTTTATTATTTTGTATAGAAAAAATGATATATTTACATCGCATATATTTCATCATCGTC 60 Query 155 TTATTCACACTAACTTCCCATGGCCGTCTTGGATTTTCCGACAGCACTAAACTCCACGAG 214 | |||||||||| || |||||| |||||||| |||||||||| || |||||| |||||| Sbjct 61 CTCTTCACACTAATTTTCCATGGGCGTCTTGGTTTTTCCGACAACAATAAACTTCACGAG 120 Query 215 GCCGAAGTGAGGGCATTAAAGGAGATAGGGAAGAAGCTAGGGAAGAAAGATTGGAACTTC 274 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 121 GCCGAAGTGAGGGCATTAAAGGAGATAGGGAAGAAGCTAGGGAAGAAAGATTGGGACTTC 180 Query 275 AACAAAGATCCATGTAGTGGTGAAGGCAATTGGGTTGTAACAACTTACACAACCAAAGAG 334 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| | Sbjct 181 AACAAAGATCCATGTAGTGGTGAAGGCACTTGGATTGTAACAACTTACACAACCAAAGGG 240 Query 335 TTTGAGAGTAATATCACTTGTGATTGCTCCTTTCTTCCTCCAAACTCTTCTTGCCACGTC 394 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 241 TTTGAGAGTAATATCACTTGTGATTGCTCCTTTCTTCCTCAAAACTCTTCTTGCCACGTC 300 Query 395 ATT---A---G-AA------T-----AGCTCTGAAGTCGCAGAACTTAACAGGCATTGTC 436 ||| | | || | |||||||||||||||||||||||||||||||||| Sbjct 301 ATTAGAATTGGCAATTTGGTTGGCAGAGCTCTGAAGTCGCAGAACTTAACAGGCATTGTC 360 Query 437 CCTCCAGAATTCTCTAAGCTTCGCCACCTTAAAGTTTTAGACCTTAGCCGTAACTCCCTG 496 ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||| Sbjct 361 CCTCCAGAATTCTCTAAGCTTCGTCACCTTAAAGTTTTAGACCTAAGCCGTAACTCTCTG 420 Query 497 ACTGGTTCCATTCCAAAGGAATGGGCTTCGATGCGCTTGGAAGATTTATCCTTCATGGGG 556 ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 421 ACTGGTTCCATTCCAAAGGAATGGGCTTCTATGCGCTTGGAAGATTTATCTTTCATGGGG 480 Query 557 AACCGATTGTCTGGTCCATTTCCGAAAGTCCTAACTCGCCTTACAATGCTCAAAAACTTG 616 ||||||||||||||||| |||||||||||||| || |||||||||||||||| ||||||| Sbjct 481 AACCGATTGTCTGGTCCGTTTCCGAAAGTCCTGACCCGCCTTACAATGCTCAGAAACTTG 540 Query 617 AGCCTAGAAGGAAATCAGTTTTCAGGACCAATCCCTCCTGATATTGGAAAGTTAGTTCAT 676 |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| Sbjct 541 AGCCTAGAAGGAAATCAGTTTTCAGGACCAATCCCTCCTGATATTGGACAGTTGGTTCAT 600 Query 677 TTGGAGAAACTTCATCTTCCTTCAAATGCTTTCACTGGTCCATTGACTGAAAAACTTGGA 736 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 601 TTGGAGAAACTTCATCTCCCTTCAAATGCTTTCACTGGTCCATTGACTGAAAAACTTGGA 660 Query 737 TTGCTCAAGAACCTGACTGATATGAGGATAAGTGATAATAATTTCACTGGACCAATACCA 796 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 TTGCTCAAGAACCTGACTGATATGAGGATAAGTGATAATAATTTCACTGGACCAATACCA 720 Query 797 GATTTCATCGGCAATTGGACAAGAATAATGAAACTGCAGATGCATGGTTGCGGTTTGGAT 856 ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 721 GATTTCATCAGCAATTGGACAAGAATACTGAAACTGCAGATGCATGGTTGCGGTTTGGAT 780 Query 857 GGTCCGATACCTTCCAGTATTTCTACCTTAACAAGCTTGACCGACCTGAGGATTAGCGAC 916 ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| Sbjct 781 GGTCCGATACCTTCCAGTATTTCTAGCTTAACAAGCTTGACCGACCTGAGAATTAGCGAC 840 Query 917 TTAGGAGGCAAACCGTCTTCCTTCCCTC-AGTTGAAGAATTTGGAGTCTATCAAGACGCT 975 |||||||||||||||||||||||||| | | | |||||||||||| |||||||||||||| Sbjct 841 TTAGGAGGCAAACCGTCTTCCTTCCCCCCACT-GAAGAATTTGGAATCTATCAAGACGCT 899 Query 976 GATACTGAGAAAATGCAATTTAAATGGCCCAATTCCAAAATATATTGGGGA-TATGAAGA 1034 |||||||||||||||||| ||| ||||||||||||||||||||||||||| | |||||| Sbjct 900 GATACTGAGAAAATGCAAAATAATTGGCCCAATTCCAAAATATATTGGGGACT-TGAAGA 958 Query 1035 AGCTCAAAACACTTGACCTCAGTTTTAATCTCCTAAGTGGTGAGATTCCTTCATCGTTTG 1094 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 AGCTCAAAACACTTGACCTCAGTTTTAATCTCCTAAGTGGTGAGATTCCTTCATCGTTTG 1018 Query 1095 AAAATATGAAGAAAGCTGATTTCATTTATTTGACAGGAAACAAATTGACAGGAGGTGTTC 1154 |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 1019 AAAATATGAAGAAAGCCGATTTCATTTATTTGACAGGAAACAAATTGACAGGAGGGGTTC 1078 Query 1155 CAAACTACTTTGTCGAAAGAAACAAAAATGTAGATGTTTCTTTTAATAACTTTACTGATG 1214 |||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||| Sbjct 1079 CAAACTACTTTGTCGAAAGAAATAAAAATGTAGATGTTTCTTTTAATAACTTCACCGATG 1138 Query 1215 AAAGTTCAATTCCCAAAAATGGTGATTGTAACCGAGTTAGTTTTAATATGGTGGAAGGCT 1274 ||||||||||||| | ||| | ||||||||||||| || ||| |||||||| ||| Sbjct 1139 AAAGTTCAATTCCTAGCCATG---ACTGTAACCGAGTTACTTCAAATTTGGTGGAAAGCT 1195 Query 1275 TCGCCTTG---AACAAGTCACACAAGAATTCAACCTGTTTTCTTCAGCACTTCCCTTGTG 1331 |||||||| ||||| ||||||||| |||||||||||||||||| | | | ||||||| Sbjct 1196 TCGCCTTGGGGAACAAATCACACAAGGGTTCAACCTGTTTTCTTCAACGCATGCCTTGTG 1255 Query 1332 TTCATCCTAAGAGACATCATATGTATAAATTGTACATAAATTGCGGAGGAGGTGAAGTAA 1391 |||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 1256 TTCATCCTAAGAGATATCATTTATATAAATTGTACATAAATTGCGGAGGAGGTGAAGTAA 1315 Query 1392 AAGTGGATAAAGGAATAACATATCAGGCTGATGACGAACCCAAAGGTGCTTCTATGTACG 1451 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1316 AAGTGGATAAAGAAATAACATATCAGGCTGATGACGAACCCAAAGGTGCTTCTATGTACG 1375 Query 1452 TCCTTGGC---AA---GCACTGGGCGTTGAGCAGCACCGGGAACTTCATGGACAATGATG 1505 |||||||| || || ||||||||||||||||||||||||||||||||||||||||| Sbjct 1376 TCCTTGGCGCTAACAAGCGCTGGGCGTTGAGCAGCACCGGGAACTTCATGGACAATGATG 1435 Query 1506 ACGATGCTGATGATTATACTGTGCAGAACACATCCAGGCTATCAGTTAATGCTTCCTCTC 1565 ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1436 ACGATGCTGATGAGTATACTGTGCAGAACACATCCAGGTTATCAGTTAATGCTTCCTCTC 1495 Query 1566 CCAGCTTTGGACTTTATAGGACTGCTCGAGTCTCTCCTTTATCGTTGACTTACTATGGAC 1625 |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 1496 CCAGCTTTGGACTTTATAGGACAGCTCGAGTCTCTCCTTTATCGTTGACTTACTACGGAA 1555 Query 1626 TTTGTCTCGGAAATGGGAACTACACTGTGAATCTCCACTTCGCTGAGATCATCTTTACTG 1685 | ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 1556 TCTGTCTTGGAAATGGGAACTACACTGTGAATCTCCACTTTGCTGAGATCATCTTTACCG 1615 Query 1686 ATGACAACACACTT-TACAGTCTCGGCAAACGTTTGTTCGATATTTATGTTCAGGATCAG 1744 ||||||| ||| || ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1616 ATGACAATACA-TTATACAGTCTCGGCAAACGTTTGTTTGATATTTATGTTCAGGATCAG 1674 Query 1745 TTAGTGATTAAAAACTTTAACATTCAAGAAGCAGCTCGAGGATCAGGTAAGCCAGTCATA 1804 || ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| Sbjct 1675 TTGGTGATTAAAAACTTTAACATTCAAGAAGCTGCTCGAGGATCAGGTAAGCCAATCATT 1734 Query 1805 AAATCGTTTCTGGTAAATGTAACGGACCATACTCTGAAGATCGGTTTGCGATGGGCTGGC 1864 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1735 AAATCGTTTCTGGTAAATGTAACGGACCATACTCTGAAGATTGGTTTGCGATGGGCTGGC 1794 Query 1865 AAAGGAACAACAGGCATTCCAATTAGAGGAGTATATGGTCCTATGATTTCAGCTATATCT 1924 ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 1795 AAAGGGACAACAGGCATTCCGATTAGAGGGGTATATGGTCCTATGATTTCAGCTATATCT 1854 Query 1925 GTGGAACCCAATTTCAAACCTCCGGTATATTATGACATAAAGGGTATCATACTAAAAGCG 1984 ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| | Sbjct 1855 GTGGAACCCAATTTCAAACCTCCGGTATATTATGACACAAAGGATATCATACTAAAAGTG 1914 Query 1985 GGGGTACCTGTTGCTGCAGCAACACTTCTTTTGTTTATCATAGTGGGTGTATTCTTGaaa 2044 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1915 GGGGTACCTGTCGCTGCAGCAACACTTCTTTTGTTTATCATAGTGGGTGTATTCTGGAAA 1974 Query 2045 aaaaGACGTGACAAAAATGCTATTGATAAAGAGTTAAGGGGTTTAGATCTTCAAACTGGA 2104 ||||| ||||||||||||| |||||| |||||| |||||||| ||||||||||||||||| Sbjct 1975 AAAAGGCGTGACAAAAATGATATTGACAAAGAGCTAAGGGGTCTAGATCTTCAAACTGGA 2034 Query 2105 ACTTTTACTCTACGACAGATAAAAGCAGCCACTGACAATTTTGATGTAACAAAAAAGATT 2164 |||||||||||||| |||||||||||||||||||| ||||| |||||||||| ||||||| Sbjct 2035 ACTTTTACTCTACGGCAGATAAAAGCAGCCACTGATAATTTCGATGTAACAAGAAAGATT 2094 Query 2165 GGTGAAGGTGGATTTGGCTCTGTTTACAAGGGTGAATTATCTGAGGGGAAATTAATCGCA 2224 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2095 GGTGAAGGTGGATTTGGCTCTGTTTACAAGGGTGAATTATCTGAGGGGAAATTAATTGCA 2154 Query 2225 GTTAAACAGCTGTCTGCAAAATCGAGGCAGGGAAATCGCGAGTTTGTAAATGAGATAGGA 2284 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2155 GTTAAACAACTGTCTGCAAAATCGAGGCAGGGAAATCGCGAGTTTGTAAATGAGATAGGA 2214 Query 2285 ATGATCTCAGCTCTTCAACATCCAAATCTTGTGAAGCTATATGGATGTTGTGTTGAAGGA 2344 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2215 ATGATCTCAGCTCTTCAACATCCGAATCTTGTGAAGCTATATGGATGTTGTGTTGAAGGA 2274 Query 2345 AACCAATTGATATTGGTGTATGAGTATTTGGAGAACAACTGTCTATCTCGTGCGCTATTT 2404 |||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||| Sbjct 2275 AACCAATTGATATTGGTGTATGAGTACTTGGAGAACAACTGTCTATCTCGAGCGTTATTT 2334 Query 2405 GGAAAGGATGAGAGTTCTAGACTGAAACTAGACTGGTCAACAAGGAAGAAGATATTTTTG 2464 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 2335 GGAAAGGATGAGAGTTCTAGACTGAAACTAGACTGGTCAACAAGGAAGAAGATTTTTTTG 2394 Query 2465 GGGATAGCTAAAGGACTGACATTTCTCCATGAAGAATCTAGGATAAAGATTGTACACAGA 2524 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2395 GGGATAGCCAAGGGACTGACATTTCTCCATGAAGAATCTAGGATAAAGATTGTACACAGA 2454 Query 2525 GATATAAAGGCAAGCAACGTGTTACTCGATAAGGATCTCAACGCTAAAATTTCTGACTTT 2584 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 2455 GATATAAAGGCAAGCAATGTGTTACTCGATAAGGATCTCAACGCTAAAATTTCTGACTTT 2514 Query 2585 GGTTTGGCAAAGCTGAACGATGATGGAAATACACACATCAGCACTCGTATTGCAGGAACT 2644 ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 2515 GGTTTGGCAAAGCTGAATGATGATGGAAACACACACATCAGCACTCGTATTGCAGGAACT 2574 Query 2645 ATAGGTTATATGGCTCCCGAGTATGCGATGCGTGGCTACCTGACTGAAAAAGCGGATGTT 2704 ||||||||||||||||| || ||||| |||||||| ||| |||||||||||||||||||| Sbjct 2575 ATAGGTTATATGGCTCCTGAATATGCAATGCGTGGTTACTTGACTGAAAAAGCGGATGTT 2634 Query 2705 TATAGCTTTGGCGTCGTTGCACTCGAAATCGTGAGTGGAAAGAGTAACACAAACTTTAGG 2764 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 2635 TATAGCTTCGGCGTCGTTGCACTCGAAATCGTTAGTGGAAAGAGTAACACAAACTTTAGG 2694 Query 2765 CCAACCGAGGACTTTGTTTACCTTCTTGATTGGGCTTACGTTTTGCAAGAGAGGGGAAGC 2824 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 2695 CCAACCGAGGACTTTGTTTACCTTCTTGATTGGGCTTACGTTTTGCAAGAGAGAGGAAGC 2754 Query 2825 TTACTAGAGCTGGTTGATCCAACGTTAGTCTCAAATTACTCAGAAGAGGAAGCCATGCTG 2884 |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| || Sbjct 2755 TTACTAGAGCTGGTTGATCCAACGTTAGCCTCAGATTACTCAGAAGAGGAAGCCATGTTG 2814 Query 2885 ATGCTGAACGTGGCATTGATGTGCACTAGCGCGTCACCGACGCTAAGGCCTACAATGTCA 2944 |||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||| Sbjct 2815 ATGCTGAACGTGGCATTGATGTGCACTAACGCATCACCGACTCTAAGGCCTACAATGTCG 2874 Query 2945 CAGGTGGTGAGTCTCTTAGAGGGAAAGACAGCGATGCAAGAGTTGCTGTCGGATCCGAGC 3004 ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2875 CAGGTGGTGAGTCTCATAGAGGGGAAGACAGCGATGCAAGAGTTGCTGTCGGATCCGAGC 2934 Query 3005 TTCTCAACGGTTAACCCGAAGCTTAAAGCCTTAAGGAACCATTTTTGGCAAAACGAGCTG 3064 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 2935 TTCTCAACGGTTAACCCGAAGCTTAAAGCCTTGAGGAACCATTTTTGGCAAAACGAGCTG 2994 Query 3065 AGCAGATCACTTAGCTTCTCCACAAGCGGGCCTCGTACTGGCTCTGCTAACTCACTCGTT 3124 |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 2995 AGCAGATCGCTTAGCTTCTCCACAAGCGGGCCTCGTACTGCCTCTGCTAACTCACTCGTT 3054 Query 3125 GATGCTGAGGAGAAAACTGGACTTTTGGATTAGGTTCTTAAAATTCCaaaaaaaTTAGTG 3184 ||||| ||||||||||| |||||||||||||| ||||||||||||||||| |||||| Sbjct 3055 GATGCAGAGGAGAAAACCGGACTTTTGGATTAAGTTCTTAAAATTCCAAATTT-TTAGTG 3113 Query 3185 AGATTCGTGGGAGTGGTGAAGTTTTCACCAATAAAAAAGAGTTTGCTTTCAAGTGTATAT 3244 | ||||| | |||| |||||||||||||||| |||| ||||||||||| |||||||||| Sbjct 3114 AAATTCGCGAGAGTAATGAAGTTTTCACCAATGAAAA-GAGTTTGCTTTTAAGTGTATAT 3172 Query 3245 ATAGTTGGAAGTTCTTTAGCTCGAAATAGTGTTATATGAAC-AAGATTGATCTCA 3298 |||||||||||||||||||||| |||||||||||||||||| || | |||||||| Sbjct 3173 ATAGTTGGAAGTTCTTTAGCTCAAAATAGTGTTATATGAACTAA-AGTGATCTCA 3226 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 165902080501 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5