BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470802
Length=1683
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07720.1 | Symbols: KCS3 | 3-ketoacyl-CoA synthase 3 | chr1:... 2375 0.0
AT2G28630.1 | Symbols: KCS12 | 3-ketoacyl-CoA synthase 12 | chr... 965 0.0
> AT1G07720.1 | Symbols: KCS3 | 3-ketoacyl-CoA synthase 3 | chr1:2390655-2392453
REVERSE LENGTH=1799
Length=1799
Score = 2375 bits (1286), Expect = 0.0
Identities = 1396/1450 (96%), Gaps = 3/1450 (0%)
Strand=Plus/Plus
Query 3 AAAA-ACAATAATGGATCTTCTTGTTATGCT-CTCCTCTCTTCTCATCTCCTATCTCATC 60
|||| |||||||||||||||||||||||||| || |||||||||| |||| |||||||||
Sbjct 37 AAAACACAATAATGGATCTTCTTGTTATGCTCCT-CTCTCTTCTCGTCTCTTATCTCATC 95
Query 61 TTCAAGATCTGGAAACACATAGACTCCAAGAGAGATCAAAACTGCTACATCTTGGACTAC 120
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 96 TTCAAGATCTGGAAACGCATAGACTCCAAGAGAGACCAAAACTGCTACATCTTGGACTAC 155
Query 121 CAATGTCACAAACCTTCCGATGATCGTATGGTGAGCACTCAATTCAGCGGTGATGTCATC 180
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||
Sbjct 156 CAATGTCACAAACCTTCCGACGATCGTATGGTGAACACTCAATTCAGCGGTGATATCATC 215
Query 181 CTTCGAAACAAACACCTTCGTCTCAACGAGTACAAGTTCCTCCTCAAAGCCATCGTTAGT 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 216 CTTCGAAACAAACACCTTCGGCTCAACGAGTACAAGTTCCTCCTCAAAGCCATCGTTAGT 275
Query 241 TCCGGTATCGGAGAGCAAACTTACGCACCAAGGCTCTTCTTCGAGGGCCGTGAACAGCGT 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 276 TCCGGTATCGGAGAGCAAACTTACGCACCAAGGCTCTTCTTTGAGGGCCGTGAACAGCGT 335
Query 301 CCTACGCTACAAGATGGGATCTCGGAGATGGAAGAGTTTTACATAGACACAATTGAGAAA 360
||||||||||| |||||| ||||||||||||||||||||||||||||||| || ||||||
Sbjct 336 CCTACGCTACAGGATGGGCTCTCGGAGATGGAAGAGTTTTACATAGACACCATCGAGAAA 395
Query 361 GTCCTTGAGAGAAACAAAATCTCACCTTCGGAGATTGACATCCTCGTGGTCAACGTCTCA 420
|||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 396 GTCCTTAAGAGAAACAAAATTTCACCTTCGGAGATTGACATCCTCGTAGTCAACGTCTCA 455
Query 421 ATGCTCAATTCAACGCCTTCACTATCTGCAAGAATCATTAAACATTACAAAATGAGAGAG 480
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 456 ATGCTCAATTCAACGCCTTCACTATCTGCAAGAATCATTAACCATTACAAAATGAGAGAA 515
Query 481 GACATAAAAGTCTTCAACTTGACGGCGATGGGATGTAGCGCGAGTGTTATCTCTATAGAT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 516 GACATAAAAGTCTTCAACTTGACGGCGATGGGATGTAGCGCGAGTGTTATCTCCATAGAT 575
Query 541 ATTGTCAAAAACATCTTCAAAACATACAAGAACAAGCTTGCTCTTGTCGTGACCTCCGAG 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 576 ATTGTCAAAAACATCTTCAAAACATACAAGAACAAGCTTGCTCTTGTCGTGACCTCAGAG 635
Query 601 TCACTTAGTCCTAACTGGTACAGCGGAAACAACAGGTCCATGATCCTTGCCAACTGCTTG 660
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||
Sbjct 636 TCACTTAGTCCTAACTGGTACAGCGGAAACAACCGGTCCATGATTCTTGCCAACTGTTTG 695
Query 661 TTCCGCTCCGGTGGCTGCGCTGTTCTCTTGACGAACAAGCGCAGTCTGAGCAGGAGAGCC 720
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 696 TTCCGCTCTGGTGGCTGCGCTGTTCTCTTGACGAACAAGCGTAGTCTGAGCAGGAGAGCC 755
Query 721 ATGTTCAAGCTAAGGTGTTTGGTAAGAACACACCATGGAGCCAGAGACGATTCATACAGC 780
|||||||||||||||||||||||||| || ||||||||||||||||||||||||| || |
Sbjct 756 ATGTTCAAGCTAAGGTGTTTGGTAAGGACGCACCATGGAGCCAGAGACGATTCATTCAAC 815
Query 781 GCTTGTGTCCAAAAAGAAGACGAGCTAGGCCATATCGGTGTCCACTTAGACAAGACTCTT 840
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 816 GCCTGTGTCCAAAAAGAAGACGAGCTAGGACATATCGGTGTCCACTTAGACAAGACTCTT 875
Query 841 CCAAAAGCGGCGACTCGTGCTTTCATAGACAACCTCAAAGTCATCACTCCCAAGATTCTT 900
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 876 CCAAAAGCAGCGACTCGTGCTTTCATAGACAACCTCAAAGTCATCACTCCCAAGATTCTT 935
Query 901 CCCGTAACCGAGCTCTTAAGGTTTATGTTGTGTCTTCTTCTCAAGAAGCTTCGTAGCAAC 960
|| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 936 CCGGTAACAGAGCTTTTAAGGTTTATGTTGTGTCTTCTTCTCAAGAAGCTTCGTAGCAGC 995
Query 961 CCTAGCAAAGGCTCAACGAACGTGACTCAGGCAGCTCCAAAGGCAGGGATTAAAGCAGGG 1020
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 996 CCTAGCAAAGGCTCGACGAACGTGACTCAGGCAGCTCCAAAGGCAGGGGTTAAAGCAGGG 1055
Query 1021 ATTAACTTCAAGACCGGTATTGACCATTTCTGCATTCACACTGGAGGTAAAGCGGTTATC 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 ATTAACTTCAAGACCGGTATTGACCATTTCTGCATTCACACTGGAGGTAAAGCGGTTATC 1115
Query 1081 GACGCAATCGGTTACAGCCTCGACTTAAACGAGTACGATCTAGAACCGGCGAGGATGACG 1140
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1116 GACGCGATCGGTTACAGCCTCGACTTAAACGAGTACGATCTTGAACCGGCGAGGATGACG 1175
Query 1141 CTACACCGGTTTGGGAACACGTCAGCGAGTAGCTTGTGGTATGTTTTGGGGTATATGGAG 1200
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1176 TTACACCGGTTTGGAAACACGTCAGCGAGTAGCTTGTGGTATGTTTTGGGGTATATGGAG 1235
Query 1201 GCAAAGAAGAGGCTGAAGAGAGGAGATAGAGTGTTCATGATCAGCTTTGGGGCAGGTTTC 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1236 GCAAAGAAGAGGCTGAAGAGAGGAGATAGAGTGTTCATGATCAGCTTTGGGGCAGGTTTC 1295
Query 1261 AAGTGCAATAGTTGCGTTTGGGAAGTTGTGAGAGATCTTAATGTTGGGGAAGCTCTAGGG 1320
||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||
Sbjct 1296 AAGTGCAATAGTTGCGTTTGGGAAGTTGTGAGAGATCTTAACGTTGGAGAAGCTGTAGGG 1355
Query 1321 AATGTTTGGAATCATTGCATTGATCAGTACCCACCAAAATCGATTTTGAATCCATTTTTT 1380
||||| ||||||||||||||| |||| |||||||||||||||||||||||||| |||||
Sbjct 1356 AATGTGTGGAATCATTGCATTAATCAATACCCACCAAAATCGATTTTGAATCCGTTTTTC 1415
Query 1381 GAGAAGTATGGTTGGATTCATGAAGAAGAAGATCCTGATACTTTCAAGATGCCTGAAGGA 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1416 GAGAAGTATGGTTGGATTCATGAAGAAGAAGATCCTGATACTTTCAAGATGCCCGAAGGA 1475
Query 1441 TTTATGTGAA 1450
||||||||||
Sbjct 1476 TTTATGTGAA 1485
Score = 167 bits (90), Expect = 4e-40
Identities = 139/159 (87%), Gaps = 18/159 (11%)
Strand=Plus/Plus
Query 1539 TTCTTTATTTTCTAATTGGATGGGAAAGAAAATATGAATGACAAAAGATACTGCGATATA 1598
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1642 TTCTTT-TTTTCTAATTGGATGGGAAAGAAAATATGAATGACAAA-GATACTGCGATATA 1699
Query 1599 -t--tttt-t-t--t------aa-taaataatttttttGGGTGTAATAATCTATTTATTG 1644
| |||| | | | || ||||||||| ||| ||||||||||||||||||||||
Sbjct 1700 CTAGTTTTCTCTCATTTTTTTAAATAAATAATTCTTT-GGGTGTAATAATCTATTTATTG 1758
Query 1645 TATTCCTTTGGTAAATAATAATACCCCGAAAATTTTAAT 1683
||| ||||||||||||||||||||||| |||||||||||
Sbjct 1759 TAT-CCTTTGGTAAATAATAATACCCCAAAAATTTTAAT 1796
> AT2G28630.1 | Symbols: KCS12 | 3-ketoacyl-CoA synthase 12 | chr2:12275319-12277245
REVERSE LENGTH=1927
Length=1927
Score = 965 bits (522), Expect = 0.0
Identities = 1167/1470 (79%), Gaps = 78/1470 (5%)
Strand=Plus/Plus
Query 3 AAAAACAA-TAATGGATCTTCT-TGTTATGC-TCTCCTCTCTTCTCATCTCCTATCTCAT 59
||||| || | ||||||||||| | || | | | | |||||||||| |||| || ||| |
Sbjct 87 AAAAATAACT-ATGGATCTTCTCT-TTCT-CTTTTTCTCTCTTCTCCTCTCTTACCTCTT 143
Query 60 CTTCAAGATCTGGAAACACATAGACTCCAAG-AGAGATCAAA-ACTGCTACATCTTGGAC 117
|||||||||||||||| ||||||||| ||| | ||| |||| | |||||||| || |||
Sbjct 144 TTTCAAGATCTGGAAACTCATAGACTCAAAGCA-AGA-CAAAGATTGCTACATTTTAGAC 201
Query 118 TACCAATGTCACAAACCTTCCGATGATCGTATGGTGAGCACTCAATTCAGCGGTGATG-T 176
||||||||||| ||||| |||| ||||| |||||||||||||||||||| || || | |
Sbjct 202 TACCAATGTCATAAACCAACCGACGATCGAATGGTGAGCACTCAATTCAGTGGAGA-GAT 260
Query 177 CATCCT-TCGAAA-CAAACACCTTCGTCTCAA-CGAGTACAAGTTCCTCCTCAAAGCCAT 233
||| | |||||| |||| ||||| || | || ||| ||||||||||| |||||||||||
Sbjct 261 CAT-TTATCGAAACCAAA-ACCTTGGT-TTAACCGAATACAAGTTCCTTCTCAAAGCCAT 317
Query 234 CGTTAGTTCCGGTATCGGAGAGCAAACTTACGCACCAAGGCTCT-TCTTCGAGGGCCGTG 292
|| || || || || ||||| ||||| ||||| ||||| || | |||| || || || |
Sbjct 318 AGTAAGCTCAGGGATTGGAGAACAAACCTACGCTCCAAGACT-TGTCTTTGAAGGTCGAG 376
Query 293 AACAGCGTCCTACGCTACAAGATGGGATCTCGGAGATGGAAGAGTTTTACATAGACA-CA 351
|| |||||||| || |||||||||||||||| |||||||||||||| ||| | |||| |
Sbjct 377 AAGAGCGTCCTTCGTTACAAGATGGGATCTCCGAGATGGAAGAGTTCTACGTGGACAGC- 435
Query 352 AT-TGAGAAAGTCCTTGAGAGAAA-CAAAATCTCACCTTCGGAGATTGACATCCTCGTGG 409
|| || ||| |||| |||||||| | |||| || ||| || || ||||||||||| |
Sbjct 436 ATCGGA-AAACTCCTGGAGAGAAATC-AAATATCTCCTAAAGACATAGACATCCTCGTAG 493
Query 410 TCAACGTCTCAATGCTCAATTCAACGCCTTCACTATCTGCAAGAATCATTAAACATTACA 469
|||||||||| |||||| ||||||||| || || || ||||||||||||| |||||||
Sbjct 494 TCAACGTCTCCATGCTCTCTTCAACGCCATCTTTAGCTTCAAGAATCATTAACCATTACA 553
Query 470 AAATGAGAGAGGACATAAAAGTCTTCAACTTGA-CGGCGATGGGATGTAGCGCGAGTGTT 528
| |||||||| ||| | |||||||||||||||| ||| ||||||||| ||||| ||| |
Sbjct 554 AGATGAGAGACGACGTCAAAGTCTTCAACTTGACCGG-GATGGGATGCAGCGCAAGTCTA 612
Query 529 ATCTCTATAGATATTGTCAAAAACATCTTCAA-AACATAC-AAGAACAAGCTT-GCTCTT 585
||||| |||| |||||||| ||||| || || | | ||| | |||||| || ||||||
Sbjct 613 ATCTCCGTAGACATTGTCAAGAACATTTTTAAGAGC-TACGCA-AACAAG-TTAGCTCTT 669
Query 586 GTCGTGACCTCCGAGTCACTT-AGTCCTAACTGGTACAGCGGAAACAACAGGTCCATGAT 644
|| | ||||||||||| || || ||||| ||||| |||||||||||| | || |||||
Sbjct 670 GTTGCCACCTCCGAGTC-TTTGAGCCCTAATTGGTATAGCGGAAACAACCGTTCAATGAT 728
Query 645 CCTT-GCCAACTGCTTGTTCCGCTCCGGTGGCTGCGCTGTTCTCTTGACGAACAAGCGCA 703
||| |||||||| |||||||| |||||||| || ||| |||||||||| ||||| || |
Sbjct 729 -CTTAGCCAACTGTTTGTTCCGGTCCGGTGGATGTGCTATTCTCTTGACTAACAAACGTA 787
Query 704 GTC-TGAGCAGGAGAGCCATGTTCAAGCT-AAGGTGTTTGGTAAGAACACACCATGGAGC 761
| | |||| | || ||| ||||| || || || |||| ||||| | || |||||||||||
Sbjct 788 G-CTTGAGAAAGAAAGCAATGTTTAAACTCAA-GTGTATGGTACGGACTCACCATGGAGC 845
Query 762 CAGAGACGA-T-TCATACAGCGCTTGTGTCCAAAAAGAAGACGAGCTAGGCCATATC-GG 818
||||| || | | ||| | | ||| ||||| ||||| || | ||||| | || ||
Sbjct 846 TAGAGAGGAGTCTTATA-ATTG-TTGCATCCAAGCCGAAGATGAACAAGGCCGTGTCGGG 903
Query 819 TGTCCACTTAGACAAGACTCTTCCAAAAGCGGCGACTCGTGCTTTCATAGACAACCTCAA 878
| | |||| | |||| ||| |||||||| || ||||||||||| |||| ||||||||
Sbjct 904 T-TTTACTTGGGGAAGAATCTACCAAAAGCCGCTACTCGTGCTTTTGTAGAAAACCTCAA 962
Query 879 AGTCATCACTCCCAAGATTCTTCCCGTAACCGAGCTCT-TAAGGTTTATGTT-GTGTCTT 936
|| || || |||||||||||||||||||||||||| | ||||||| ||||| | |||
Sbjct 963 GGTTATAACACCCAAGATTCTTCCCGTAACCGAGCT-TATAAGGTTCATGTTAAAG-CTT 1020
Query 937 CTTCTCAAG------AAGCTTCGT-AGCAACCCTAGCAAAGGCTCAACGAACGTGACTCA 989
||| ||||| ||| ||||| | ||||||||||| ||||| ||||| | |||
Sbjct 1021 CTTATCAAGAAAATCAAGATTCGTCA-AAACCCTAGCAAGGGCTCCACGAA--T--CTC- 1074
Query 990 GGCAGCTCCAAAGGCA-GGGATTAAA-GCAGGGATTAACTTCAAGACCGGTATTGACCAT 1047
| | || || | |||||| ||||| || |||||||||||||| || || |||
Sbjct 1075 --C--CACC--GGGGACTCCATTAAAGGCAGGAATCAACTTCAAGACCGGGATCGAACAT 1128
Query 1048 TTCTGCATTCACACTGGAGGTAAAGCGGTTATCGACGCAATCGGTTACAGCCTCGACTTA 1107
|| ||||| || || ||||| ||||| || || || | || || | ||| | || |||
Sbjct 1129 TTTTGCATACATACCGGAGGAAAAGCTGTGATTGATGGGATTGGACATAGCTTGGATTTA 1188
Query 1108 AACGAGTACGATCTAGAACCGGCGAGGATGACGCTACACCGGTTTGGGAACACGTCAGCG 1167
|||||||| ||| | ||||| ||||||||||| || ||||||||||| || || || |||
Sbjct 1189 AACGAGTATGATATTGAACCTGCGAGGATGACTCTTCACCGGTTTGGCAATACTTCGGCG 1248
Query 1168 AGTAGCTTGTGGTATGTTTTGGGGTATATGGAGGCAAAGAAGAGGCTGAAGAGAGGAGAT 1227
||||| ||||||||||| |||| || |||||||| |||||||| ||||||||||||||
Sbjct 1249 AGTAGTTTGTGGTATGTGTTGGCTTACATGGAGGCCAAGAAGAGATTGAAGAGAGGAGAT 1308
Query 1228 AGAGTGTTCATGATCAGCTTTGGGGCAGGTTTCAAGTGCAATAGTTGCGTTTGGGAAGTT 1287
||||| || ||||| |||||||| || ||||| ||||| ||||| |||||||||||||||
Sbjct 1309 AGAGTTTTTATGATAAGCTTTGGAGCTGGTTTTAAGTGTAATAGCTGCGTTTGGGAAGTT 1368
Query 1288 GTGAGAGATCTTAATGTTGGGGAAGCTCTAGGGAATGTTTGGAATCATTGCATTGATCAG 1347
||||||||||||| || ||| ||| | ||| ||||| |||||||||||||||||| |
Sbjct 1369 GTGAGAGATCTTACTGGTGGTGAATCAAAAGGAAATGTGTGGAATCATTGCATTGATGAT 1428
Query 1348 TACCCACCAAAATCGATTTTGAATCCATTTTTTG-AGAAGTATGGTTGGATTCATGAAGA 1406
|| ||||||||||||||| ||||||| || |||| |||||| ||| |||||||| | ||
Sbjct 1429 TATCCACCAAAATCGATTCTGAATCC-TTATTTGGAGAAGTTTGGCTGGATTCA--A-GA 1484
Query 1407 AGAAGATCCTGATACTTTCAAGATGCCTGA 1436
||||||||||| ||||||||| | |||||
Sbjct 1485 TGAAGATCCTGACACTTTCAAGGTCCCTGA 1514
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83182303065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5