BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470877 Length=846 Score E Sequences producing significant alignments: (Bits) Value AT1G08160.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 1271 0.0 > AT1G08160.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr1:2559487-2560403 REVERSE LENGTH=917 Length=917 Score = 1271 bits (688), Expect = 0.0 Identities = 798/848 (94%), Gaps = 20/848 (2%) Strand=Plus/Plus Query 1 AATCTTTGCTCTCTATCCTTTCCAAGAAATTAACTAGAAGTCCATCAAAATCTTCTCTGA 60 |||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||| Sbjct 6 AATCTTTGCTCTCTATCCTTTCCAAGCAATTAACT-GAAGTCCATCAAAACCTTCTCTGA 64 Query 61 CAATGGTGCCTCCAAACCCAGCCCACCAACCGGCTCGGCGAACGCAACCGC-A--GCAA- 116 ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 65 CAATGGTGCCTCCAAACCCAGCCCACCAACCGGCTCGGCGAACGCAACCGCAACTGCAAC 124 Query 117 -CC--TCG--A-C-C--G--CAACCCCTTCCGGGCAGGCGTATGAACCCCGTCCTATGCA 165 || ||| | | | | |||||||| ||||||||||||||||||||||||||||||| Sbjct 125 CCCAATCGCAACCTCGAGCACAACCCCTGCCGGGCAGGCGTATGAACCCCGTCCTATGCA 184 Query 166 TCATCGTTGCCCTCGTCCTCTTGGGACTACTTGTGGGTCTCGCCATATTAATCACATACC 225 ||||||| |||||||||||||||||||| || ||||||||||||||||| |||||||||| Sbjct 185 TCATCGTCGCCCTCGTCCTCTTGGGACTCCTCGTGGGTCTCGCCATATTGATCACATACC 244 Query 226 TCACACTTAGGCCAAAACGACTCATCTACACGGTAGAAGCCGCGTCGGTCCAAGATTTTG 285 ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 245 TCACACTCAGGCCAAAGCGACTCATCTACACGGTAGAAGCCGCGTCGGTCCAAGAGTTTG 304 Query 286 CTATAGGCAACAATGACGATCACATTACCGCAAAATTCAGCTATGTGATCAAATCATACA 345 ||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||| Sbjct 305 CTATAGGCAACAATGACGATCACATCAACGCAAAATTCAGCTACGTGATCAAATCATACA 364 Query 346 ACCCGGAGAAACATGTCTCCGTAAGATACCACTCCATGCGTATCTCCACGGCTCATCATA 405 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 365 ACCCGGAGAAACATGTCTCCGTAAGATACCACTCCATGCGTATCTCCACGGCTCATCATA 424 Query 406 ACCAGTCCGTGGCTCACAAAAATATCTCTCCTTTCAAGCAACGTCCTAAGAACGAGACTA 465 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 425 ACCAGTCCGTGGCTCACAAAAATATCTCTCCTTTCAAGCAACGTCCTAAGAACGAGACTA 484 Query 466 GGATTGAGACGCAGCTTGTGTCCAAGAATGTGGCACTGTCTAAGTTCAATGCCAGGGACT 525 ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 485 GGATTGAGACGCAGCTTGTGTCCCACAATGTGGCACTGTCTAAGTTCAATGCCAGGGACT 544 Query 526 TGAGGGCTGAAAAATCAAAAGGAACGATCGAAATGGAAGTGTATATAACAGCTAGAGTGA 585 | |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 545 TAAGGGCTGAAAAATCAAAAGGGACGATCGAAATGGAAGTGTATATAACGGCTAGAGTGA 604 Query 586 GCTACAAGACGTGGATTTTCTGGTCGAGGAGACGTACTTTGAAGGCTGTGTGTACGCCTG 645 |||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||| | Sbjct 605 GCTACAAGACGTGGATTTTCCGGTCGAGAAGACGTACGTTGAAGGCTGTGTGTACGCCGG 664 Query 646 TAATGATCAACGTTACATCAAGCTCGTTGGATGGATTCCAGAGAGTCTTATGCAAAACTC 705 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 665 TAATGATCAACGTTACATCAAGCTCGTTGGATGGATTCCAGAGAGTGTTATGCAAAACTC 724 Query 706 GTCTTTAGTTTGAATTATTATTATCTTGTATTGGTTTCATTTGTGTGCAAAATTTGCTAT 765 ||||||||||||| |||| | |||||| ||||||||||||||||||||||||||||||| Sbjct 725 GTCTTTAGTTTGATTTATCCTCATCTTGAATTGGTTTCATTTGTGTGCAAAATTTGCTAT 784 Query 766 ATGTGCCCTTGATTGATtgtgtgtgtgtttttc-ttttctaaatttc-tgctttggtttt 823 ||||| | ||||||||||||||||||||||||| |||| |||||||| | |||||||||| Sbjct 785 ATGTGACATTGATTGATTGTGTGTGTGTTTTTCCTTTT-TAAATTTCCT-CTTTGGTTTT 842 Query 824 gttctttt 831 |||||||| Sbjct 843 GTTCTTTT 850 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41242234687 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5