BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg470899 Length=685 Score E Sequences producing significant alignments: (Bits) Value AT1G08380.1 | Symbols: PSAO | photosystem I subunit O | chr1:26... 1014 0.0 > AT1G08380.1 | Symbols: PSAO | photosystem I subunit O | chr1:2640813-2641828 REVERSE LENGTH=703 Length=703 Score = 1014 bits (549), Expect = 0.0 Identities = 649/695 (93%), Gaps = 16/695 (2%) Strand=Plus/Plus Query 1 AATAAAAATCTATTTCTTGCGTTTGTG-T-T-TGT-GTT--AAAAATAAAGGAGATCAGT 54 ||||||||||||||||||| ||||||| | | | | || ||||||||||||||||||| Sbjct 4 AATAAAAATCTATTTCTTGTGTTTGTGTTGTATTTACTTAAAAAAATAAAGGAGATCAGT 63 Query 55 TTGGGAGAAAGAAGCAAAGAACaaaaaaaTGGCAGCAACATTTGCAACACCATCGACGGT 114 ||||||||||| ||||||| | | |||||||||||||||||||||||||||||||||||| Sbjct 64 TTGGGAGAAAGCAGCAAAG-A-AGAAAAATGGCAGCAACATTTGCAACACCATCGACGGT 121 Query 115 GATAGGCCTCGGAGGATCATCCATCACCACCAAACCCTTCTCTTCATCCTTTCTAAAACC 174 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 122 GATAGGCCTCGGAGGATCATCCATCACCACCAAACCCTTCTCTTCATCCTTTTTAAAACC 181 Query 175 AACATTAAGCGCCAAGAACCCTCTAAGACTCGCCGGGGCATCGGGTGGAAGAGTCACTTG 234 |||||||||||||||||||||| | ||||||||||| |||||||| |||||||||||||| Sbjct 182 AACATTAAGCGCCAAGAACCCTTTGAGACTCGCCGGTGCATCGGGAGGAAGAGTCACTTG 241 Query 235 CTTTGAGAGGAACTGGTTGAGGAGAGATTTGAACGTGGTGGGATTTGGGCTGATCGGATG 294 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 242 CTTTGAGAGGAACTGGTTGAGGAGAGATTTGAACGTGGTAGGATTTGGGCTGATCGGATG 301 Query 295 GCTAGCTCCGTCGAGTATTCCAGCGATAAACGGGAAGAGCCTGACGGGTCTCTTCTTCGA 354 ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 302 GCTAGCTCCGTCGAGCATTCCAGCGATAAATGGGAAGAGCCTGACGGGTCTCTTCTTCGA 361 Query 355 TAGCATAGGAACTGAGCTGGCTCACTTCCCAACTCCTCCAGC-CGTCACTTCACAGTTCT 413 |||||| ||||||||||| ||||||||||| ||||||||||| | ||||||||||||||| Sbjct 362 TAGCATCGGAACTGAGCTCGCTCACTTCCCGACTCCTCCAGCTC-TCACTTCACAGTTCT 420 Query 414 GGTTGTGGTTGGTTACGTGGCACTTAGGCCTCTTCCTCTGCCTCACTTTCGGACAAATCG 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GGTTGTGGTTGGTTACGTGGCACTTAGGCCTCTTCCTCTGCCTCACTTTCGGACAAATCG 480 Query 474 GATTCAAGGGCAGGACTGAGGATTACTTCTAAGGATAACTATTCCTCTTC-CATTTGTAC 532 ||||||||||||||||||| |||||||||||||||||||||||| | || | ||||||| Sbjct 481 GATTCAAGGGCAGGACTGAAGATTACTTCTAAGGATAACTATTCTTGTTTTCGTTTGTAC 540 Query 533 TATATGTTCTCTCTCTTGGTTATGTGTAATGTTATCAAATCAAACCAAAGCTTTCTTTGC 592 |||||| |||||||||||||||||||||| ||||||| ||||| ||||||||||||||| Sbjct 541 TATATG--CTCTCTCTTGGTTATGTGTAATATTATCAA-TCAAAACAAAGCTTTCTTTGC 597 Query 593 TATTTGATGTTTCATTCTATATATCGACTAGTCTTTCGTA-ATGATCTTGCTTTTAAAAA 651 |||||||||||||||||||||| ||||| |||||||| || ||||||||| |||||| || Sbjct 598 TATTTGATGTTTCATTCTATATCTCGACAAGTCTTTCTTATATGATCTTGATTTTAAGAA 657 Query 652 TGTC-GTCAGTCTAACTAAAGTGTAAAATGTTAAA 685 |||| ||||||||||||||||| | |||||||||| Sbjct 658 TGTCTGTCAGTCTAACTAAAGTATTAAATGTTAAA 692 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33154537020 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5