BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470961
Length=1529
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08890.1 | Symbols: | Major facilitator superfamily protein... 2292 0.0
AT1G08900.1 | Symbols: | Major facilitator superfamily protein... 1616 0.0
> AT1G08890.1 | Symbols: | Major facilitator superfamily protein
| chr1:2848348-2852270 FORWARD LENGTH=1675
Length=1675
Score = 2292 bits (1241), Expect = 0.0
Identities = 1372/1436 (96%), Gaps = 6/1436 (0%)
Strand=Plus/Plus
Query 1 AGATGGAATCTGGAAGTATCAAAACACCTCTGGTGAATAATGATCAAGAAGAAGCAAGAA 60
||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||
Sbjct 25 AGATGGAATCTGGAAGTATGAAAACACCTCTGGTGAAT-A--ATCAAGAAGAAGCAAGAA 81
Query 61 CCTCTTCTTCCATCACTTCTGGTCTTCTTCTCAGTACCTCCGTCGCTATCACTGGATCCT 120
||||||||||||||||| |||||||||||| ||||||||||||||| ||||||| || |
Sbjct 82 GCTCTTCTTCCATCACTTGTGGTCTTCTTCTTAGTACCTCCGTCGCTGTCACTGGCTCTT 141
Query 121 TCGTTTATGGCTGCGCTATGTCATATTCGTCGCCTGCTCAATCCAAAATCATGGAAGAAC 180
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 142 TCGTTTATGGCTGCGCTATGTCATATTCATCGCCTGCTCAGTCCAAAATCATGGAAGAAC 201
Query 181 TGGGACTTTCCGTGGCAGATTATTCGTTTTTCACATCGGTCATGACATTAGGAGGAATGA 240
||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 202 TGGGACTTTCCGTTGCAGATTATTCGTTTTTCACATCGGTAATGACATTGGGAGGAATGA 261
Query 241 TAACAGCCGCGCTTAGTGGAAAAATCGCTGCAATTATTGGTCGTCGACAGACAATGTGGA 300
| || |||||| ||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 262 TTACGGCCGCGTTTAGTGGAAAAATTGCTGCAGTTATTGGTCGTCGACAGACAATGTGGA 321
Query 301 TCTCGGATGTTTTCTGCATCTTCGGTTGGCTTGCTGTAGCCTTTGCACATGATAAAATGC 360
|| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 322 TCGCGGATGTTTTCTGCATCTTTGGTTGGCTCGCTGTAGCCTTTGCACATGATAAAATGC 381
Query 361 TGCTAAATATTGGACGAGGCTTCTTGGGGTTTGGGGTTGGTCTCATTAGTTATGTGGTAC 420
|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 382 TGTTAAATATTGGTCGAGGCTTCTTGGGGTTTGGGGTTGGTCTCATTAGTTATGTGGTTC 441
Query 421 CTGTGTATATAGCAGAAATTACACCTAAAGCATTTCGTGGAGGATTTTCTTTTTCCAATC 480
|||| ||||||||||||||||| || |||||||||||||||||||| |||||||||||||
Sbjct 442 CTGTATATATAGCAGAAATTACGCCCAAAGCATTTCGTGGAGGATTCTCTTTTTCCAATC 501
Query 481 AACTTCTACAAAGTTTTGGAATTTCGCTCATGTTCTTCACCGGAAACTTTTTTCATTGGA 540
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 502 AACTTCTACAAAGTTTTGGGATATCGCTCATGTTCTTCACCGGAAACTTTTTTCATTGGA 561
Query 541 GAACATTAGCTCTTTTAAGTGCAATCCCATGTGGTGTCCAAATGATATGTTTATTTTTTA 600
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 562 GAACATTAGCTCTTTTAAGTGCAATCCCATGTGGTATCCAAATGATATGTTTATTTTTTA 621
Query 601 TTCCTGAATCACCTAGATGGCTGGCTATGTATGGTAGAGAACGAGAACTTGAAATTACTT 660
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 622 TTCCTGAATCACCTAGATGGCTGGCTATGTATGGTAGAGAACGAGAGCTTGAGGTTACTT 681
Query 661 TGAAGAGACTAAGAGGAGAAAATGGTGATATTCTCGAAGAAGCAGCTGAAATCAGAGAAA 720
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 TGAAGAGGCTAAGAGGAGAAAATGGTGATATTCTCGAAGAAGCAGCTGAAATCAGAGAAA 741
Query 721 CGGTGGAAACCTCCAGAAGAGAATCTCGAAGTGGACTAAGAGATTTGTTCAATATGAAAA 780
| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 742 CAGTGGAAACCTCTAGAAGAGAATCTCGAAGTGGACTAAAAGATTTGTTCAATATGAAAA 801
Query 781 ACGCACATCCGTTGATCATTGGATTGGGCCTAATGCTCTTGCAACAATTTTGTGGGAGTT 840
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 ACGCACATCCGTTAATCATTGGATTGGGCCTAATGCTCTTGCAACAATTTTGTGGGAGTT 861
Query 841 CGGCGATAAGTGCTTATGCTGCTCGTATTTTCGACACAGCCGGTTTTCCAAGCGACATAG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 862 CGGCGATAAGTGCTTATGCTGCTCGTATTTTCGACACAGCCGGTTTTCCAAGCGACATAG 921
Query 901 GAACATCCATCCTTGCAGTTATTTTGGTACCGCAATCTATAATTGTCATGTTCGCCGTCG 960
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 922 GAACATCCATCCTTGCAGTTATTTTGGTACCGCAATCTATTATTGTCATGTTTGCCGTCG 981
Query 961 ACCGATGTGGACGCCGACCACTTCTGATGAGCTCTTCTATCGGTCTGTGCATATGTTCAT 1020
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 982 ACCGATGTGGACGCCGACCACTTTTGATGAGCTCTTCTATCGGTCTGTGCATATGTTCAT 1041
Query 1021 TTTTTATTGGCCTTTCATACTATCTTCAGGTTTACCATGGTGATTTTCAGGAGTTTTGTT 1080
|||| |||||||| || |||||||||||| |||||||||||||||| ||||||||||
Sbjct 1042 TTTTAATTGGCCTCTCTTACTATCTTCAGA---ACCATGGTGATTTTCAAGAGTTTTGTT 1098
Query 1081 CCCCTATGTTAATCGTCGGTTTAGTGGGTTATGTCTTATCCTTTGGCATTGGTTTAGGTG 1140
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1099 CCCCTATCTTAATCGTCGGTTTAGTGGGTTATGTCTTATCCTTTGGCATTGGTCTAGGTG 1158
Query 1141 GACTACCATGGGTTATAATGTCTGAGGTGTTTCCGATGAATGTGAAAATTACCGCTGGTA 1200
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1159 GACTACCATGGGTTATTATGTCTGAGGTGTTTCCGGTGAATGTGAAAATTACCGCCGGTA 1218
Query 1201 GCCTTGTAACAGTATCTAACTGGTTTTTCAGTTGGATTATCATTTTCAGTTTTAATTTCA 1260
| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1219 GTCTTGTAACAGTGTCAAACTGGTTTTTCAGTTGGATTATCATTTTCAGTTTTAATTTCA 1278
Query 1261 TGATGCAATGGAGTGCTTTCGGAACATATTTCATATTTGCTGGAGTTTCTCTGATGTCAT 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1279 TGATGCAATGGAGTGCTTTCGGAACATATTTCATATTTGCTGGAGTTTCTCTGATGTCAT 1338
Query 1321 TCGTATTTGTATGGACATTGGTGCCTGAGACGAAAGGCCGAACACTTGAAGATATTCAAC 1380
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1339 TCGTATTTGTATGGACTTTGGTGCCTGAGACGAAAGGCCGAACACTTGAAGATATTCAAC 1398
Query 1381 AATCACTAGGCCAACTTTCATAAATCTAAAGTTGATTGTTTACGCCACAATGCCAG 1436
|||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||
Sbjct 1399 AATCACTAGGCCAACTTTCATAAATCCAAAGTTGATTCTTTACTCCACAATGCCAG 1454
> AT1G08900.1 | Symbols: | Major facilitator superfamily protein
| chr1:2852454-2855779 FORWARD LENGTH=1543
Length=1543
Score = 1616 bits (875), Expect = 0.0
Identities = 1244/1420 (88%), Gaps = 33/1420 (2%)
Strand=Plus/Plus
Query 1 AGATGGAATCTGGAAGTA-TCAAAACACCTCTGGTGAATAATGATCAAGAAGAAGCAAGA 59
|||||||||||| ||| | || || ||| ||| ||||||| | |||||||||| |||
Sbjct 23 AGATGGAATCTGAAAG-ACTCGAATCACATCTTCTGAATAA-G--CAAGAAGAAG-AAG- 76
Query 60 ACCTCTTCTTCCATCACTTCTGGTCTTCTTCTCAGTACCTCCGTCGCTATCACTGGATCC 119
|||||||| |||||||||||||||||||||| || ||||||| | || ||||||||
Sbjct 77 ----CTTCTTCCTTCACTTCTGGTCTTCTTCTCAGCACATCCGTCGTTGTCGCTGGATCC 132
Query 120 TTCGT-TTATGGCTGCGCTATGTCATATTCGTCGCCTGCTCAATCCAAAATCATGGAAGA 178
||| | |||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 133 TTC-TGTTATGGCTGCGCCATGTCATATTCGTCGCCTGCTCAGTCCAAAATCATGGAAGA 191
Query 179 ACTGGGACTTTCCGTGGCAGATTATTCGTTTTTCACATCGGTCATGACATTAGGAGGAAT 238
||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 192 ACTGGGACTTTCCGTTGCAGATTATTCGTTTTTCACTTCGGTAATGACATTAGGAGGAAT 251
Query 239 GATAACAGCCGCGCTT-AGTGGAAAAATCGCTGCAATTATTGGTCGTCGACAGACAATGT 297
||| || |||| | || || || |||||| |||| | |||||||||||||||||||||
Sbjct 252 GATTACCGCCGTG-TTCAGCGGTAAAATCTCTGCTCTCGTTGGTCGTCGACAGACAATGT 310
Query 298 GGATCTCGGATGTTTTCTGCATCTTCGGTTGGCTTGCTGTAGCCTTTGCACATGATAAAA 357
||||||| ||||||| ||| || || |||||||| |||||||| ||||||||||||| |
Sbjct 311 GGATCTCAGATGTTTGCTGTATTTTTGGTTGGCTCGCTGTAGCGTTTGCACATGATATTA 370
Query 358 TGCTGCTAAATATTGGACGAGGCTTCTTGGGGTTTGGGGTTGGTCTCATTAGTTATGTGG 417
| |||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 371 TAATGCTTAATACTGGACGACTCTTCTTGGGGTTTGGGGTTGGTCTCATTAGTTATGTGG 430
Query 418 TACCTGTGTATATAGCAGAAATTACACCTAAAGCATTTCGTGGAGGATTTTCTTTTTCCA 477
| |||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||
Sbjct 431 TTCCTGTGTATATAGCAGAAATTACACCCAAAACATTTCGTGGAGGATTTTCTTATTCCA 490
Query 478 ATCAACTTCTACAAAGTTTTGGAATTTCGCTCATGTTCTTCACCGGAAACTTTTTTCATT 537
|||| ||||||||| || |||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 491 ATCAGCTTCTACAATGTCTTGGGATTTCACTCATGTTCTTCACCGGAAACTTTTTCCATT 550
Query 538 GGAGAACATTAGCTCTTTTAAGTGCAATCCCATGTGGTGTCCAAATGATATGTTTATTTT 597
|| ||||||||||||||||||||||||||||| ||| | ||||| |||||||||||||||
Sbjct 551 GGCGAACATTAGCTCTTTTAAGTGCAATCCCAAGTGCTTTCCAAGTGATATGTTTATTTT 610
Query 598 TTATTCCTGAATCACCTAGATGGCTGGCTATGTATGGT-AGAGAACGAGAACTTGAAATT 656
||||||||||||| |||||||||||||| ||||||||| | ||| | ||| |||||| ||
Sbjct 611 TTATTCCTGAATCTCCTAGATGGCTGGCGATGTATGGTCA-AGATCAAGAGCTTGAAGTT 669
Query 657 ACTTTGAAGAGACTAAGAGGAGAAAATGGTGATATTCTCGAAG-AAGCAGCTGAAATCAG 715
| ||||| | |||||| ||||||||| |||||||||| ||| |||| |||||||||||
Sbjct 670 TCGTTGAAAAAACTAAGGGGAGAAAATAGTGATATTCTA-AAGGAAGCTGCTGAAATCAG 728
Query 716 AGAAACGGTGGAAACCTCCAGAAGAGAATCTCGAAGTGGACTAAGAGATTTGTTCAATAT 775
|||||| ||||||| ||||||| ||| |||| ||||||| ||||||| |||||| ||||
Sbjct 729 AGAAACAGTGGAAATATCCAGAAAAGAGTCTCAAAGTGGAATAAGAGACTTGTTCCATAT 788
Query 776 -GAAAAACGCACATCCGTTGATCATTGGATTGGGCCTAATGCTCTTGCAACAATTTTGTG 834
| ||| ||||||| |||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 789 CGGAAA-CGCACATTCGTTAATCATTGGATTGGGTTTAATGCTCTTGCAACAATTTTGTG 847
Query 835 GGAGTTCGGCGATAAGTGCTTATGCTGCTCGTATTTTCGACACAGCCGGTTTTCCAAGCG 894
||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 848 GGAGTGCGGCGATAAGTGCTTATGCTGCTCGAATTTTCGACAAAGCCGGTTTTCCAAGCG 907
Query 895 ACATAGGAACATCCATCCTTGCAGTTATTTTGGTACCGCAATCTATAATTGTCATGTTCG 954
||||||||||| ||||||| ||||| ||| || |||||||||||||| ||||||||||
Sbjct 908 ACATAGGAACAACCATCCTCGCAGTGATTCTGATACCGCAATCTATAGTTGTCATGTTAA 967
Query 955 CCGTCGACCGATGTGGACGCCGACCACTTCTGATGAGCTCTTCTATCGGTCTGTGCATAT 1014
|||| |||||||| ||||||||||||||||| |||| ||||||||||| |||||||||
Sbjct 968 CCGTTGACCGATGGGGACGCCGACCACTTCTTATGATTTCTTCTATCGGAATGTGCATAT 1027
Query 1015 GTTCATTTTTTATTGGCCTTTCATACTATCTTCAGGTTTACCATGGTGATTTTCAGGAGT 1074
| |||||||||||||||||||||||||| |||||| | ||||||| |||||| |||
Sbjct 1028 GCTCATTTTTTATTGGCCTTTCATACTACCTTCAGAAG-A--ATGGTGAATTTCAGAAGT 1084
Query 1075 TTTGTTCCCCTATGTTAATCGTCGGTTTAGTGGGTTATGTCTTATCCTTTGGCATTGGTT 1134
| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1085 TATGTTCCGTTATGTTAATCGTCGGTTTAGTGGGTTATGTCTCATCCTTTGGCATTGGCC 1144
Query 1135 TAGGTGGACTACCATGGGTTATAATGTCTGAGGTGTTTCCGATGAATGTGAAAATTACCG 1194
|||||||| ||||||||||||||||||||||| | |||||| ||||||||||||| ||||
Sbjct 1145 TAGGTGGATTACCATGGGTTATAATGTCTGAGATATTTCCGGTGAATGTGAAAATCACCG 1204
Query 1195 CTGGTAGCCTTGTAAC-AGTATCTAACTGGTTTTTCAGTTGGATTATCATTT-TCAGTTT 1252
| |||||||||||||| | | || || |||||||| | |||||||||||| | | |||||
Sbjct 1205 CCGGTAGCCTTGTAACGA-TGTCAAATTGGTTTTTTAATTGGATTATCATCTAT-AGTTT 1262
Query 1253 TAATTTCATGATGCAATGGAGTGCTTTCGGAACATATTTCATATTTGCTGGAGTTTCTCT 1312
|||||||||||| || ||||| |||| ||||||||||||||||||| |||||||||||||
Sbjct 1263 TAATTTCATGATACAGTGGAGCGCTTCCGGAACATATTTCATATTTTCTGGAGTTTCTCT 1322
Query 1313 GATGTC-ATTCGTATTTGTATGGACATTGGTGCCTGAGACGAAAGGCCGAACACTTGAAG 1371
| || | || |||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1323 GGTGACGAT-CGTATTCATATGGACATTGGTGCCTGAGACGAAAGGCCGAACACTCGAAG 1381
Query 1372 ATATTCAA-CAATCACTAGGCCAACTTTCATAAA-TCTAA 1409
| |||||| || ||| ||| || |||||| |||| |||||
Sbjct 1382 AGATTCAAACA-TCATTAGTCCGACTTTCGTAAAATCTAA 1420
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75451419135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5