BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470966
Length=1842
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08920.2 | Symbols: ESL1 | ERD (early response to dehydratio... 2730 0.0
> AT1G08920.2 | Symbols: ESL1 | ERD (early response to dehydration)
six-like 1 | chr1:2867259-2870656 FORWARD LENGTH=1917
Length=1917
Score = 2730 bits (1478), Expect = 0.0
Identities = 1755/1881 (93%), Gaps = 49/1881 (3%)
Strand=Plus/Plus
Query 1 GTGACACAAAAGAAAAGA-T-GGGAAGCTGACCTCTGGCTTTCCTCCTCCATTAATCAAG 58
|||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||
Sbjct 1 GTGACACAAAAGAAAAGATTGGGGAAGCTGACCTCTGCCTTTCCTCCTCCATTAATCAAG 60
Query 59 GAATATAAATGAGCTTTAAACTCAGTCCTCTAATGGAACCCAAAAAAGCAAATATATATT 118
|||||||||| |||||||||||||||||||| |||||| ||||||||||||||| ||||
Sbjct 61 GAATATAAATCAGCTTTAAACTCAGTCCTCTTATGGAAGACAAAAAAGCAAATATTTATT 120
Query 119 CGTAAATATAACTTCAAAAACCTTT-AAGAAAATTATCTCTGTTATCTT-TCCGAGGAGA 176
|||||||||||||||| || ||||| || |||| | |||||||| | || |||| |||||
Sbjct 121 CGTAAATATAACTTCAGAACCCTTTCAACAAAACTCTCTCTGTTCT-TTCTCCGTGGAGA 179
Query 177 AGTTAAAGAAGATGACTATGTCGGAGAACTCAAGAAACTTGGAAGCTGGTTTGTTACTGA 236
|||| | |||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 180 AGTT--A-AAGATGACGATGTCGGAGAACTCAAGAAACTTGGAAGCTGGTTTGCTACTGA 236
Query 237 GGAAGAACCAAAACGACATCAACGAATGTCGTATCACTGCTGTTGTACTTTTCAGCACTT 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 237 GGAAGAACCAAAACGACATCAACGAATGTCGTATCACTGCTGTTGTACTTTTCAGTACTT 296
Query 297 TCGTTTCTGTTTGTGGCTCTTTCTGCTTCGGTTGTGCGGCAGGTTATTCATCAGTTGCTC 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TCGTTTCTGTTTGTGGCTCTTTCTGCTTCGGTTGTGCGGCAGGTTATTCATCAGTTGCTC 356
Query 357 AAACAGGGATCATAAATGATTTAGGCCTCTCTGTTGCACAATACTCCATGTTTGGTTCAA 416
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 357 AAACAGGGATCATAAATGATTTAGGTCTCTCTGTTGCACAATACTCCATGTTTGGTTCAA 416
Query 417 TCATGACTTTTGGAGGAATGATTGGTGCCATCTTCAGCGGGAAAGTCGCAGATCTCATGG 476
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 417 TCATGACTTTTGGAGGAATGATTGGTGCCATCTTCAGCGGGAAAGTTGCAGATCTCATGG 476
Query 477 GTCGCAAAGGGACAATGTGGTTTGCTCAAATTTTCTGCATCTTCGGTTGGCTTGCAGTAG 536
|||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 477 GTCGAAAAGGGACTATGTGGTTTGCTCAAATTTTCTGCATCTTCGGTTGGGTTGCAGTAG 536
Query 537 CATTTGCAAATGACTCCATGTGGCTTGATATAGGAAGACTATCCACAGGATTTGCAGTTG 596
|||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 537 CATTAGCAAAAGACTCCATGTGGCTTGATATTGGAAGACTATCCACAGGATTTGCAGTTG 596
Query 597 GTTTATTAAGCTATGTGATACCAGTTTATATTGCAGAAATAACACCAAAACATGTTCGAG 656
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 597 GTTTATTAAGCTATGTGATACCAGTTTACATTGCAGAAATAACACCAAAACATGTTCGAG 656
Query 657 GAGCGTTTGTATTTGCTAATCAGCTGATGCAGAGTTGTGGGTTGTCTTTATTCTACGTCA 716
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 657 GAGCGTTTGTATTTGCTAATCAGCTGATGCAGAGTTGTGGATTGTCTTTATTCTACGTCA 716
Query 717 TTGGAAATTTTGTTCATTGGCGTAAATTGGCCTTAATCGGTCTCATTCCATGTGCTTTGC 776
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 717 TTGGAAATTTTGTTCATTGGCGTAACTTGGCCTTAATCGGTCTCATTCCATGTGCGTTGC 776
Query 777 AAGTTGTGACTTTGTTCTTTATTCCAGAGTCCCCTCGACTACTGGGAAAATGGGGGCGTG 836
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||
Sbjct 777 AAGTTGTGACTTTGTTCTTTATTCCAGAGTCCCCTAGACTACTGGGAAAATGGGGACATG 836
Query 837 AAAAAGAATGTAGAGCTTCATTGCAACGTCTTCGCGGAGATGATGCAGATATCTCTGAAG 896
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 837 AAAAAGAATGTAGAGCTTCATTGCAAAGTCTTCGCGGAGATGATGCAGATATCTCTGAAG 896
Query 897 AAGCCAACACTATCAAAGAAACCATGATATTGTTTGATGAAGGACCAAAATCGCGGGTTA 956
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 897 AAGCCAACACTATCAAAGAAACCATGATCTTGTTTGATGAAGGACCAAAATCGCGGGTTA 956
Query 957 TGGATTTGTTTCAGAGAAGATATGCTCCATCTGTTGTTATTGGTGTGGGACTAATGCTTC 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TGGATTTGTTTCAGAGAAGATATGCTCCATCTGTTGTTATTGGTGTGGGACTAATGCTTC 1016
Query 1017 TACAACAACTCTCTGGAAGCTCAGGACTTATGTACTATGTCGGTAGCGTATTTGACAAAG 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1017 TACAACAACTCTCTGGAAGCTCAGGACTTATGTACTATGTCGGTAGCGTATTTGATAAAG 1076
Query 1077 GAGGATTTCCAAGCAGCATTGGCTCAATGATTCTTGCAGTGATCATGATACCAAAAGCTA 1136
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 GAGGGTTTCCAAGCAGCATTGGCTCAATGATTCTTGCAGTGATCATGATACCAAAAGCTC 1136
Query 1137 TTTTGGGTCTGATTCTGGTTGAAAAAATGGGACGAAGACCACTTCTATTGATGAATAATC 1196
| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1137 TATTGGGTCTGATTTTGGTTGAGAAAATGGGACGAAGACCACTTCTATTGATGAATGATC 1196
Query 1197 TTT-TTAACCACAGGCCTCTACCGGTGGAATGTGCTTTTTCAGCTTGCTCCTTA-T---- 1250
||| || || | ||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1197 TTTATTTAC-A--GGCCTCTACCGGTGGAATGTGCTTTTTCAGCTTGCTCCTCAGTTTTT 1253
Query 1251 C---------------ATATGGCATGCTTGATGAGCTCACTCCGATTTTCACATGTATCG 1295
| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 CCTTCTGCTTTCGGTCATATGGCATGCTTGATGAGCTCACTCCGATTTTCACATGTATCG 1313
Query 1296 GTGTAGTGGGTTTCATCTCTTCATTTGCCGTAGGCATGGGAGGCTTACCATGGATCATCA 1355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 GTGTAGTGGGTTTCATCTCTTCATTTGCCGTAGGCATGGGAGGCTTACCATGGATCATCA 1373
Query 1356 TGTCTGAGATATTCCCAATGAATGTTAAAGTTTCTGCTGGGACTCTGGTTACTTTGGCCA 1415
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1374 TGTCTGAGATATTCCCAATGAATGTTAAAGTTTCTGCTGGGACTCTGGTTACCTTAGCCA 1433
Query 1416 ACTGGTCCTTTGGTTGGATTGTAGCTTTTGCCTACAACTTCATGCTAGAGTGGAACGCAT 1475
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1434 ACTGGTCCTTTGGTTGGATTGTTGCTTTCGCCTACAACTTCATGCTAGAGTGGAACGCAT 1493
Query 1476 CAGGAACGTTCTTGATCTTCTTTACTATATGCGGTGCGGGTATAGTCTTTATTTACGCAA 1535
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct 1494 CAGGAACGTTCTTGATCTTCTTTACTATATGTGGTGCGGGTATAGTCTTTATTTATGCGA 1553
Query 1536 TGGTACCCGAAACTAAAGGAAGAACATTGGAAGATATACAAGCTTCTCTTACAGATTTTC 1595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 TGGTACCCGAAACTAAAGGAAGAACATTGGAAGATATACAAGCTTCTCTTACAGATTTTC 1613
Query 1596 TACAATGAGAACAACTTTTACCTGTTTAAAGTTATTCAtttttt-ttGGATTAAAATTGG 1654
|||||||||| ||| ||| || |||||||||||||||||||||| || ||||| ||||||
Sbjct 1614 TACAATGAGATCAAGTTTGACTTGTTTAAAGTTATTCATTTTTTCTTAGATTACAATTGG 1673
Query 1655 AGGGAGGTTTATAGTTTTT-GTTATAATTGTTACCTCATTTGATG-GCAATTGAGAAAGA 1712
|||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1674 GGGGAGGTTTATAGTTTTTTGTTGTAATTGTTACCTCATTTGATGTGCAATTGAGAAAGA 1733
Query 1713 GATCACT--A---TAAGGTTTAGATATCTCTCTTTCTCTCTGTCTCAGTT-AATTTCTCC 1766
||||||| | |||||||||||||||||||| |||| | | || ||| | |
Sbjct 1734 GATCACTTGAACATAAGGTTTAGATATCTCTCTGTCTCAGTAAATTAGCCCAATGTATGT 1793
Query 1767 A-ATGTAT-GTAttt-ttttACAC--AAAAAAGAAGTAATATAAAATTGAACTTTAAAGT 1821
| | |||| || |||||||| |||||| ||| |||||||||||||||||||| ||
Sbjct 1794 ATA-GTATAGTCCCAGTTTTACACCCAAAAAA-AAGAAATATAAAATTGAACTTTAAGGT 1851
Query 1822 TACTGGCTTTTTGCTTTCATT 1842
| ||||||||||||||||||
Sbjct 1852 -ATTGGCTTTTTGCTTTCATT 1871
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91164189720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5