BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470975
Length=1163
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08970.4 | Symbols: HAP5C, NF-YC9 | nuclear factor Y, subuni... 1452 0.0
> AT1G08970.4 | Symbols: HAP5C, NF-YC9 | nuclear factor Y, subunit
C9 | chr1:2882543-2884337 FORWARD LENGTH=1613
Length=1613
Score = 1452 bits (786), Expect = 0.0
Identities = 958/1036 (92%), Gaps = 32/1036 (3%)
Strand=Plus/Plus
Query 143 GTAGAGAATGGATCAACAAGAACATGGACAGTCTGGAGCTATCAACTATGGCACAAACCC 202
|||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 595 GTAGTGAATGGATCAACAAGACCATGGACAGTCTGGAGCTATGAACTATGGCACAAACCC 654
Query 203 ATACCAAACCAATCCC-ATGAGCACCACTGCTGCTACTGTACCCGGGGGTGCGGCACAAA 261
|||||||||||| ||| |||||||||||||||||||||||| | || ||||||||||||
Sbjct 655 ATACCAAACCAA-CCCGATGAGCACCACTGCTGCTACTGTAGCAGGAGGTGCGGCACAAC 713
Query 262 CAGGCCAGCTGGCGTTCCACCAGATCCATcagcagcagcagcagcaacagctggctcagc 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 714 CAGGCCAGCTGGCGTTCCACCAGATCCATCAGCAGCAGCAGCAGCAACAGCTGGCACAGC 773
Query 322 agcttcaagcaTTTTGGGAGAACCAATTCAAAGAGATTGAGAAGACTACCGATTTCAAGA 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 AGCTTCAAGCATTTTGGGAGAACCAATTCAAAGAGATTGAGAAGACTACCGATTTCAAGA 833
Query 382 ACCACAGCCTTCCGCTTGCGAGAATCAAGAAAATCATGAAAGCGGACGAAGATGTCCGTA 441
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 834 ACCACAGCCTTCCCCTTGCGAGAATCAAGAAAATCATGAAAGCGGATGAAGATGTCCGTA 893
Query 442 TGATCTCGGCTGAGGCGCCTGTCGTGTTTGCAAGGGCATGCGAGATGTTCATCTTGGAGC 501
||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||
Sbjct 894 TGATCTCGGCTGAGGCGCCTGTCGTGTTTGCAAGGGCCTGTGAGATGTTCATCCTGGAGC 953
Query 502 TGACACTCAGGTCGTGGAACCACACTGAGGAGAACAAGAGGCGGACGTTGCAGAAGAACG 561
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 954 TGACACTCAGGTCGTGGAACCACACTGAGGAGAATAAGAGGCGGACGTTGCAGAAGAACG 1013
Query 562 ATATTGCCGCTGCTGTGACTAGAACCGATATCTTTGATTTCCTTGTGGATATTGTTCCCC 621
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1014 ATATTGCTGCTGCTGTGACTAGAACCGATATTTTTGATTTCCTTGTGGATATTGTTCCCC 1073
Query 622 GGGAGGATCTCAGGGATGAGGTCTTGGGAAGTATTCCGAGGGGGACTGTCCCGGAAGCTG 681
||||||||||| | ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1074 GGGAGGATCTCCGAGATGAAGTCTTGGGAAGTATTCCGAGGGGCACTGTCCCGGAAGCTG 1133
Query 682 CTGCTGCTGGTTACCCGTATGGATACTTGCCTGCAGGAACTGCTCCAATAGGGAACCCAG 741
|||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 1134 CTGCTGCTGGTTACCCGTATGGATACTTGCCTGCAGGAACTGCTCCAATAGGAAATCCGG 1193
Query 742 GAATGGTTATGGGTAATCCTGGTGGTGCCTACCCACCTAATCCGTATATGGGTCAACCGA 801
||||||||||||||||||| |||||||| || ||||||||||| |||||||||||||| |
Sbjct 1194 GAATGGTTATGGGTAATCCCGGTGGTGCGTATCCACCTAATCCTTATATGGGTCAACCAA 1253
Query 802 TGTGGCAACAACAGGCACCTGACCAACCTGACCAAGATAATTAGCAAGAAACTCGTTCAA 861
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 1254 TGTGGCAACAACAGGCACCTGACCAACCTGACCAGGAAAATTAGCAAGAAACTCGTTCTA 1313
Query 862 GTCTCGTCCATGTGGAATTAAGAAAGGAGGAGACCTTAGACAAGAAAATGAAAAGAACAT 921
|||||||||| ||| || | || || | ||||||||||||||||||||||||||||||
Sbjct 1314 GTCTCGTCCAGGTG-AA--AGGA--GG-G-AGACCTTAGACAAGAAAATGAAAAGAACAT 1366
Query 922 ATCAGAATTTTCAAATTGGGTGTTGTAGAAGAGTCTAA-GTGTTTATGTCTATCGATCCT 980
||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1367 ATCAGAATTGTCAAATTGGGTGTTGTAGAAGAATCTAAAGTGTTTATGTCTATCGATCCT 1426
Query 981 TT-CTTAAAGGAGAAACTTACGGA--AACCAGAAAGAAGAATCTATAAACTGTAAGAAAC 1037
|| || ||| |||||| ||| ||| |||||||||||||||| |||||||||||||||||
Sbjct 1427 TTTCT-AAACGAGAAATTTAGGGATGAACCAGAAAGAAGAATGTATAAACTGTAAGAAAC 1485
Query 1038 AAGTGTGCTTT-GACAAA-GttttttttATTTGAATGTTAATTTGTCTATCTTTATTACA 1095
||||||||||| |||||| |||||||| |||||||||||||||| | | ||||||| |||
Sbjct 1486 AAGTGTGCTTTTGACAAAAGTTTTTTT-ATTTGAATGTTAATTTCTGTGTCTTTATCACA 1544
Query 1096 C-T-T-A--TTA--ACCC-CAAAAAGTATCTCATTGAATATTTAAAAATTAAAACAAAAG 1147
| | | | ||| | || ||||| ||||||||||| |||||||||| ||||||
Sbjct 1545 CATATTAAGTTATTATCCACAAAATGTATCTCATTGGATATTTAAAA-------CAAAAG 1597
Query 1148 GACAATAATATTAAGG 1163
||||||||||||||||
Sbjct 1598 GACAATAATATTAAGG 1613
Score = 182 bits (98), Expect = 9e-45
Identities = 127/140 (91%), Gaps = 5/140 (4%)
Strand=Plus/Plus
Query 7 ATTGTTAAAGTCG-AAAAAGGGTAAAGCAGCAAAACCCTAATAAAATCACAGCAAATTAA 65
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATTGTTAAAGTCGAAAAAAGGGTAAAGCAGCAAAACCCTAATAAAATCACAACAAATTAA 60
Query 66 CACCAAA---CCAGATCTTAAAACTCTCTCTCCCCACCAAGAGGATCATTCACTCTCTTC 122
||| ||| ||||||||||||||||||||| |||||||||||||||| || |||||||
Sbjct 61 CACAAAAAAACCAGATCTTAAAACTCTCTCTACCCACCAAGAGGATCAACCAGTCTCTTC 120
Query 123 CCCCTTCAGTTTCTCCCTTC 142
||| ||||| |||||| |||
Sbjct 121 CCC-TTCAGATTCTCCTTTC 139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57078019665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5