BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg470981
Length=2240
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09020.1 | Symbols: SNF4, ATSNF4 | homolog of yeast sucrose ... 3397 0.0
> AT1G09020.1 | Symbols: SNF4, ATSNF4 | homolog of yeast sucrose
nonfermenting 4 | chr1:2899914-2904815 REVERSE LENGTH=2302
Length=2302
Score = 3397 bits (1839), Expect = 0.0
Identities = 2164/2306 (94%), Gaps = 81/2306 (4%)
Strand=Plus/Plus
Query 2 TTCTTCACCTTGAAAGACCATTAACATCATTCCTTCCCCAGATCCAAACAATGCCATCTC 61
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 7 TTCTTCACCTTGAAAGACCATTAACATCATTCCTTGCCCAGATCCAAACAATGCCATCTC 66
Query 62 CACTCTCTCTATTTAGGGTTCTCTCCATCTTTTCAAATCCCTAATTCTTG----CT-CCT 116
||||||||||||||||||||||||||| |||||||||||||||||||||| || |||
Sbjct 67 CACTCTCTCTATTTAGGGTTCTCTCCAACTTTTCAAATCCCTAATTCTTGCTCCCTCCCT 126
Query 117 TC---C---T-C-ATCATC--C-ACGTCTCTCTACTCCCCCAATTTAAAGATCAGAAGCC 165
|| | | | |||||| | | ||||||||||||||| |||||||||||||| ||||
Sbjct 127 TCAATCAATTCCGATCATCATCGAGGTCTCTCTACTCCCCGAATTTAAAGATCAG-AGCC 185
Query 166 GCGAATTCCTCTGGCAACTTTTCCTCGGAA----T-AG----GGTTT-CAGGTGTTGTGT 215
|||| |||||||| | ||||||||||||| | || | ||| |||||| |||||
Sbjct 186 GCGACTTCCTCTGCCTTCTTTTCCTCGGAATTTTTCAGCTACGTTTTCCAGGTGGTGTGT 245
Query 216 ATTGTC-ATCAGTTGACCTTTGCTTTTATAGCCAGATCGTTCGTGCTTTGAGTTTTTAGG 274
|||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 246 ATTGTCAATCAGTTGACCTTTGCTTTTGTAGCCAGATCGTTCGTGCTTTGAG--TTTAGG 303
Query 275 GCTCTTTTACAAGGTTTCGTGTTGGTGAAATTTCTTCTACCTAGG-TTGGGGGAAGAGTT 333
||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||
Sbjct 304 GCTCTTTTACAAGGTTTCGTGTTGGTGGAATTTC-TCTACCTAGGTTTGGGGGAAGAGTT 362
Query 334 GAGTAATTTCGTTGTAGATCGTGATTTGGGCTTTTAGGGTTTCGG-TTACTGGTGGCTGG 392
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 363 CAGTAATTTCGTTGTAGATCGTGATTTGGGCTTTTAGGGTTTCGGTTTACTGGTTGCTGG 422
Query 393 AATTTATGGTAGCGTTATTGAATTCGGACTCTCTGCATGTGTAAGCGTTGAAG-TTGCAA 451
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 423 AATTTATGGTAGCGTTATTGAATTCGGACTCTCTGCATGTGTAAGCGTTGAAGTTTG-AA 481
Query 452 GTTTCACCGGGTTTTGTTTCTTCTGCTCAAGAGTCTGAGA-CATTTGTACGCATTTAGAA 510
||||||||||||||||||||||||||| ||||||| |||| |||| |||||||| ||||
Sbjct 482 GTTTCACCGGGTTTTGTTTCTTCTGCTGAAGAGTC-GAGATTATTT-TACGCATTAAGAA 539
Query 511 TCGATTGAG-AGGATTTTTAGGAATTAGTTTCTGTGGATTGTAACTATATAAAC-ACTGG 568
|||||| || ||| |||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 540 TCGATTCAGAAGG-TTTTTAGGAATTAGTTTCTGTGGATTGTAACTATAT-AACTACTGG 597
Query 569 GAGGGGATGTTTGGTTCTACATTGGATAGCAGCCGTGGAAACAGCGCTGCCTCAGGGCAG 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GAGGGGATGTTTGGTTCTACATTGGATAGCAGCCGTGGAAACAGCGCTGCCTCAGGGCAG 657
Query 629 CTTCTTACTCCGACCCGCTTCGTGTGGCCTTATGGAGGTCGAAGGGTCTTCCTAAGCGGA 688
|||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 658 CTTCTTACTCCGACACGCTTCGTGTGGCCTTATGGAGGTAGAAGAGTCTTCCTAAGCGGA 717
Query 689 TCTTTCACCAGGTGGACTGAACATGTGCCAATGTCACCGCTTGAGGGCTGCCCGACTGTT 748
||||||||||||||||| || |||||||||||||||||||| ||||||||||| ||||||
Sbjct 718 TCTTTCACCAGGTGGACAGAGCATGTGCCAATGTCACCGCTCGAGGGCTGCCCTACTGTT 777
Query 749 TTTCAAGTCATTTGCAACTTGACGCCAGGATATCATCAGTATAAGTTTTTTGTTGATGGG 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TTTCAAGTCATTTGCAACTTGACGCCAGGATATCATCAGTATAAGTTTTTTGTTGATGGG 837
Query 809 GAATGGCGGCACGATGAGCACCAACCATTTGTAAGCGGAAATGGTGGAGTAGTGAATACA 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GAATGGCGGCACGATGAGCACCAACCATTTGTAAGCGGAAATGGTGGAGTAGTGAATACA 897
Query 869 ATATTTATAACTGGACCCGATATGGTTCCTGCTGGTTTTAGCCCAGAGACACTCGGCCGG 928
|||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 898 ATATTTATAACTGGGCCAGATATGGTTCCTGCTGGTTTTAGCCCAGAGACACTGGGCCGG 957
Query 929 TCGAATATGGATGTGGATGATGTCTTCCTGCGAACGGCTGA------CC------C-G-T 974
||||||||||||||||||||||||||||||||||||||||| || | | |
Sbjct 958 TCGAATATGGATGTGGATGATGTCTTCCTGCGAACGGCTGACCCGTCCCAGGAAGCTGTT 1017
Query 975 -C----A-----GGGGTTGATTTGGAGGTTTCTCGTCACCGTATATCTGTTTTATTGTCA 1024
| | ||||||||||||||| ||||||||||||| ||||| ||||||||||||
Sbjct 1018 CCTAGGATGTCGGGGGTTGATTTGGAGCTTTCTCGTCACCGCATATCGGTTTTATTGTCA 1077
Query 1025 ACCCGTACTGCATATGAGCTGCTCCCAGAATCGGGCAAGGTTATTGCATTGGATGTTAAT 1084
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 ACCCGCACTGCATATGAGCTGCTCCCAGAATCGGGCAAGGTTATTGCATTGGATGTTAAT 1137
Query 1085 TTGCCAGTGAAGCAAGCATTCCATATACTCTATGAGCAGGGAATCCCTTTGGCTCCTCTT 1144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 TTGCCAGTGAAGCAAGCATTCCATATACTCTATGAGCAGGGAATCCCTTTGGCTCCTCTT 1197
Query 1145 TGGGACTTTGGTAAAGGTCAATTTGTTGGAGTTCTTGGTCCACTAGACTTCATTCTAATA 1204
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 TGGGACTTTGGAAAAGGCCAATTTGTTGGAGTTCTTGGTCCACTAGACTTCATTCTAATA 1257
Query 1205 CTGAGAGAGCTTGGAACTCATGGATCAAACTTGACAGAGGAAGAGCTTGAGACGCACACA 1264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 CTGAGAGAGCTTGGAACTCATGGATCAAACTTGACAGAGGAAGAGCTTGAGACGCACACA 1317
Query 1265 ATAGCAGCCTGGAAAGAGGGGAAGGCTCATATTAGCCGACAATATGATGGAAGTGGGAGA 1324
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1318 ATAGCAGCCTGGAAAGAGGGGAAGGCTCATATTAGCCGGCAATATGATGGAAGTGGGAGA 1377
Query 1325 CCATATCCTAGGCCACTTGTTCAGGTTGGACCCTATGATAATCTGAAAGACGTTGCCCTG 1384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 CCATATCCTAGGCCACTTGTTCAGGTTGGACCCTATGATAATCTGAAAGACGTTGCCCTG 1437
Query 1385 AAAATTTTGCAAAACAAGGTGGCAGCTGTTCCGGTTATATATTCTTCTTTGCAGGATGGT 1444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 AAAATTTTGCAAAACAAGGTGGCAGCTGTTCCGGTTATATATTCTTCTTTGCAGGATGGT 1497
Query 1445 TCATATCCGCAGTTACTGCATCTTGCTTCGCTATCAGGCATCTTAAAATGTATATGCAGA 1504
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1498 TCATATCCGCAGTTACTGCATCTTGCTTCGCTATCAGGCATATTAAAATGTATATGCAGA 1557
Query 1505 TACTTTAGACATTCGTCTAGCTCTTTACCAATCCTTCAGCAACCCATTTGTTCAATTCCC 1564
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1558 TACTTTAGACATTCGTCTAGCTCTTTACCTATCCTTCAGCAACCCATTTGTTCAATTCCC 1617
Query 1565 TTGGGTACTTGGGTCCCTAGAATCGGAGAATCAAGTAGCAAACCTCTCGCTACATTGAGA 1624
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 CTGGGTACGTGGGTCCCTAGAATCGGAGAATCAAGTAGCAAACCTCTCGCTACATTGAGA 1677
Query 1625 CCTCATGCCTCTTTGGGTTCTGCGCTCGCATTATTAGTTCAAGCTGAAGTCAGTTCAATT 1684
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 CCTCACGCCTCTTTGGGTTCTGCGCTCGCATTATTAGTTCAAGCTGAAGTCAGTTCAATT 1737
Query 1685 CCCGTAGTGGATGATAATGACTCGCTTATTGACATATACTCTCGAAGTGATATAACTGCT 1744
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1738 CCCGTAGTGGATGACAACGACTCGCTTATTGACATATACTCTCGAAGTGATATAACTGCT 1797
Query 1745 CTGGCTAAAGATAAAGCATACGCACAGATTCATCTTGATGACATGACGGTTCACCAGGCG 1804
||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1798 CTGGCTAAAGACAAGGCATACGCACAGATTCATCTTGATGACATGACAGTTCACCAGGCG 1857
Query 1805 CTGCAGTTGGGGCAAGATGCAAGTCCACCTTATGGAATCTTCAACGGGCAGAGATGTCAC 1864
|| ||||||||||||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 1858 CTACAGTTGGGGCAAGATGCGAGCCCGCCTTATGGAATCTTCAACGGGCAGAGATGTCAC 1917
Query 1865 ATGTGCTTGCGCTCGGACTCTCTTGTGAAAGTGATGGAGCGGTTGGCGAATCCAGGTGTA 1924
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1918 ATGTGCTTGCGCTCAGACTCTCTTGTGAAAGTGATGGAGCGGTTGGCGAATCCAGGTGTA 1977
Query 1925 AGGAGGCTGGTGATAGTGGAAGCAGGTAGCAAACGTGTGGAAGGTATCATTTCATTGAGC 1984
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||
Sbjct 1978 AGGAGGCTGGTGATAGTGGAAGCAGGGAGCAAACGTGTTGAAGGTATCATTTCACTGAGC 2037
Query 1985 GATGTTTTCCAATTCCTGCTCGGTCTTTGACTCCCACAGCAAAACAACCTCCTCATCAAA 2044
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 2038 GATGTTTTCCAATTCCTGCTCGGTCTTTGACTCCCACAGCAAAACAACCTCC-C--CAAC 2094
Query 2045 CTCTTTTTCTCAATTCC--TCAATCAAAACTACCCAACAATTTGCTTCTTCTTCTTTTTA 2102
|||||||||||| |||| ||||||||||||||||||||||||||||||| || |||||
Sbjct 2095 CTCTTTTTCTCATTTCCCCTCAATCAAAACTACCCAACAATTTGCTTCTTTTTTTTTTTT 2154
Query 2103 T--------CTTCTTGCAAGGAATTTGTAAATTTGCTACGAACCTCTTCTTCTTCATTGT 2154
| ||||||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct 2155 TTTTTTTTTCTTCTTGCAAGGAATTTGTAAATTTGCTACGAACCTCTT-T-CATCATTGT 2212
Query 2155 TTTCTTATTATTTTTGTTGTTTTAGTTGAACAAGTTTCCATTCTTGTGAAGATATTGGCT 2214
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2213 TTTCTTATTATTTTTGTTGTTTTAGTTGAACGGGTTTCCATTCTTGTGAAGATATTGGCT 2272
Query 2215 ACCGGAATCTTTTACTAGTAGCTTCC 2240
||||||||||||||||||||||||||
Sbjct 2273 ACCGGAATCTTTTACTAGTAGCTTCC 2298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111144006630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5