BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471014 Length=875 Score E Sequences producing significant alignments: (Bits) Value AT1G09250.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1075 0.0 > AT1G09250.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:2989378-2990357 FORWARD LENGTH=980 Length=980 Score = 1075 bits (582), Expect = 0.0 Identities = 767/850 (90%), Gaps = 38/850 (4%) Strand=Plus/Plus Query 46 TTAATGGTGGAGTCTCTGTTTCCGAGCATAGAAAACACAAGTGAATCGTCTCCGGAGTCG 105 |||||||||||||||||||| |||||||| ||||||||| ||||||||||| | || Sbjct 129 TTAATGGTGGAGTCTCTGTTCCCGAGCATCGAAAACACAGGTGAATCGTCT-C-GA---- 182 Query 106 AGACGGAAGAAACCGAGGATATC-G-GA-GAC---GGCGGAGATAGAGGCACGACG-GAT 158 ||| ||||| ||||||||||| | || | | ||||||||||||||||||||| | | Sbjct 183 AGA---AAGAAGCCGAGGATATCAGAGACGGCGGAGGCGGAGATAGAGGCACGACGTG-T 238 Query 159 CAACGAAGAAAGCTTGAAGAGATGGAAAACGAATCGTGTGCAACAGATCTACGCTTCTAA 218 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 239 CAACGAAGAAAGCTTGAAGAGATGGAAAACGAATCGTGTGCAACAGATCTACGCTTGTAA 298 Query 219 GCTCGTCGAAGCTTTACGTCGAGTTCGTCAGAGGTCGTCCACCA---GTA-CG--GAGAC 272 |||||||||||||||||| |||||||||||||| || ||||||| | | | ||||| Sbjct 299 GCTCGTCGAAGCTTTACGCCGAGTTCGTCAGAGATCTTCCACCACCAGCAACAACGAGAC 358 Query 273 CGATAAAGTCGTCTCCGGCGCGGCGAGAGAGATACGTGAGACGGCGGATCGAGTTCTGGC 332 ||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||| || Sbjct 359 CGATAAACTCGTCTCCGGCGCGGCGAGGGAGATACGTGATACGGCGGATCGAGTTCTAGC 418 Query 333 TGCGTCGGCTCGTGGCACGACTCGGTGGAGCAGAGCGATTTTATCGAGTCGCGTCCGAGC 392 |||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||| Sbjct 419 TGCGTCCGCTCGTGGTACGACTCGGTGGAGCAGAGCGATTTTAGCGAGTCGCGTCCGAGC 478 Query 393 GAAGTTGAAGAAACATAGAAAGGCGAAGAAGTCAACCGGAAATTGTAAATCGAGAAAAGG 452 |||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 479 GAAGCTGAAGAAACATAGAAAGGCGAAAAAGTCAACGGGAAATTGTAAATCGAGAAAAGG 538 Query 453 TGTGACGGAGGCGAATCGGATTAAGTTACCGGCGGTTGACAGAAAACTGAAGATTCTCGG 512 | | |||||| |||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 539 TCTCACGGAGACGAATCGGATTAAGTTACCGGCGGTTGAGAGAAAACTGAAGATTCTTGG 598 Query 513 CCGGTTAGTTCCCGGTTGCCGGAAAGTCTCTGTACCTAATCTTTTAGATGAAGCGACCGA 572 ||| || ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 599 CCGTTTGGTTCCTGGTTGCCGGAAAGTCTCTGTACCGAATCTTTTAGATGAAGCGACCGA 658 Query 573 TTACATCGCGGCGTTAGAGATGCAGGTTCGAGCCATGGAGGCTCTAGCAGAACTTTTAAC 632 ||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 659 TTACATCGCAGCGTTAGAGATGCAGGTTCGAGCCATGGAGGCTCTCGCCGAACTTTTAAC 718 Query 633 CGCCGCCGCACCACGAACGACGTTGACGGGAACTTAACGGCGGCGGCAGTTAGTTTGTCA 692 ||| ||||||||||| ||||||||||| |||||||||||||||| ||||||||||||| Sbjct 719 CGCAGCCGCACCACGGACGACGTTGACCGGAACTTAACGGCGGC---AGTTAGTTTGTCA 775 Query 693 GTTGTTAATTAGCttttgtttttttttacctttttacccctttattttggct-caagtgt 751 ||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||| Sbjct 776 GTTGTTAATTAGCTTTTCTTTT-----ACCTTTTTACCCCTTTATTTTGGCTTCAAGTGT 830 Query 752 ttttttttAATCGTCGCCGCGattttaatttattaaattcatgtattttatttgtataca 811 |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 831 TTTTTTTTTCTCGTCGACGCGATTTTAATTTATTAAATTCATGTATTTTATTTGTATACA 890 Query 812 tcag---tt-ttttattt-gtagccattttgatctttctttggttttCC-TTAGATAATC 865 ||| || |||| ||| ||| ||||||||||||||||||| |||| | |||||||||| Sbjct 891 TCATCACTTCTTTTTTTTTGTATCCATTTTGATCTTTCTTTGTTTTTTCGTTAGATAATC 950 Query 866 AAAGTTATCT 875 |||||||||| Sbjct 951 AAAGTTATCT 960 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42699024950 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5