BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471025 Length=1454 Score E Sequences producing significant alignments: (Bits) Value AT1G09340.1 | Symbols: CRB, CSP41B, HIP1.3 | chloroplast RNA bi... 2281 0.0 > AT1G09340.1 | Symbols: CRB, CSP41B, HIP1.3 | chloroplast RNA binding | chr1:3015328-3018234 FORWARD LENGTH=1481 Length=1481 Score = 2281 bits (1235), Expect = 0.0 Identities = 1386/1456 (95%), Gaps = 21/1456 (1%) Strand=Plus/Plus Query 1 AGATAATTATCTTATCCCTTCAAAAATTAAGACTTTTAATGATCGGAAGGAACAAGATGA 60 |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1 AGATAATTGTCTTATCCCTTCAAAATTTAAGACTTTTAATGATCGGAAGGAACAAGATGA 60 Query 61 TGAGGTCCCACGAACCATACACAGATACTCACACACTTCAATTTCAAATAAGACCTTTTC 120 ||||||||||||||| || | | | ||||||||||||||||||||||| |||||| Sbjct 61 CGAGGTCCCACGAACC--AC-C----A-T-ACACACTTCAATTTCAAATAAGAGCTTTTC 111 Query 121 TTCAGTTGTTGCTCAGAGAGTGAACCAACAACAACCATGGCGAAGATGATGATGTTGCAA 180 ||||||||||||||||||| | |||| | | ||||||||||||||||||||||||||||| Sbjct 112 TTCAGTTGTTGCTCAGAGACTTAACC-A-ATCAACCATGGCGAAGATGATGATGTTGCAA 169 Query 181 CAGCATCAGCcttctttctctcttcttacttcttctctctctGACTTCAATGGCGCTAAG 240 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 170 CAGCATCAGCCTTCTTTCTCTCTCCTTACTTCTTCTCTGTCTGACTTCAATGGCGCTAAG 229 Query 241 CGCCATTTACAAGTCCAGTACAAGAGGAAGGTTCATCAGCCAAAAGGAGCACTCTATGTT 300 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 230 CTCCATTTACAAGTCCAGTACAAGAGGAAGGTTCATCAGCCAAAAGGAGCACTCTATGTT 289 Query 301 TCAGCATCTAGCGAAAAGAAGATTCTGATAATGGGTGGCACTCGATTCATTGGTGTGTTC 360 ||||| || ||||||||||||||||||||||||||||| ||||||||||||||| ||||| Sbjct 290 TCAGCGTCGAGCGAAAAGAAGATTCTGATAATGGGTGGTACTCGATTCATTGGTCTGTTC 349 Query 361 TTGTCCAGGCTCCTTGTCAAAGAAGGACATCAGGTTACATTGTTCACAAGGGGTAAATCT 420 ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 350 TTGTCCAGGATCCTTGTCAAAGAGGGACATCAGGTTACATTGTTCACAAGGGGTAAATCT 409 Query 421 CCTATTGCCAAACAATTGCCCGGTGAATCTGACCAAGACTTTGCTGATTTTTCTTCTAAG 480 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 410 CCTATTGCCAAACAATTGCCCGGTGAATCTGACCAAGACTTTGCTGATTTCTCTTCTAAG 469 Query 481 ATTCTTCACTTGAAAGGAGATAGAAAGGACTATGACTTTGTGAAATCAAGTCTTTCAGCA 540 |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 470 ATTCTTCACTTGAAAGGAGACAGAAAGGACTATGACTTTGTGAAGTCAAGTCTTTCAGCA 529 Query 541 GAAGGCTTCGATGTCGTTTATGATATCAACGGGAGGGAGGCCGAAGAAGTTGAGCCTATA 600 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 530 GAAGGCTTCGATGTTGTTTATGATATCAACGGGAGGGAGGCCGAAGAAGTTGAGCCCATA 589 Query 601 ATAGATGCACTGCCCAAACTAGAGCAGTACATCTATTGTTCTTCAGCTGGTGTTTATCTG 660 |||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 590 CTAGAAGCACTACCCAAACTAGAGCAGTACATCTACTGTTCTTCAGCTGGTGTTTATCTG 649 Query 661 AAATCTGATATCTTACCACATTGTGAGGAGGATGCAGTTGATCCGAAGAGCAGGCACAAG 720 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 650 AAATCTGATATCTTGCCACATTGTGAGGAGGATGCAGTTGATCCGAAGAGCAGGCACAAG 709 Query 721 GGGAAGCTAGAGACTGAGAGCTTACTGCAATCAAAAGGTGTAAATTGGACTTCTATACGT 780 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 710 GGGAAGCTGGAGACTGAGAGCTTACTGCAATCAAAAGGTGTAAACTGGACTTCTATACGT 769 Query 781 CCTGTCTACATCTATGGTCCATTGAACTACAACCCCGTCGAAGAATGGTTCTTCCACCGT 840 |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 770 CCTGTCTACATCTACGGTCCATTGAATTACAACCCCGTCGAAGAATGGTTTTTCCACCGT 829 Query 841 CTAAAAGCCGGCCGCCCAATCCCAGTTCCAAACTCTGGGATACAGATCTCACAACTCGGT 900 ||||| || || ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 830 CTAAAGGCAGGTCGCCCAATCCCGGTTCCAAACTCTGGGATACAGATCTCACAACTCGGT 889 Query 901 CACGTTAAGGACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGA 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 890 CACGTTAAGGACTTGGCAACAGCCTTTCTCAACGTGCTTGGTAACGAGAAAGCCAGCAGA 949 Query 961 GAGATATTCAACATCTCGGGGGAGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGC 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 950 GAGATATTCAACATCTCGGGGGAGAAATATGTTACCTTTGATGGGTTAGCAAAAGCTTGC 1009 Query 1021 GCAAAGGCTGGTGGGTTTCCAGAGCCAGAGATTGTTCATTACAACCCGAAAGAGTTCGAC 1080 |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1010 GCAAAGGCCGGTGGGTTTCCGGAGCCAGAGATTGTTCATTACAACCCGAAAGAGTTCGAC 1069 Query 1081 TTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAGCATTTCTTTGCGTCGGTGGAGAAA 1140 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1070 TTTGGGAAGAAGAAGGCATTCCCTTTCCGTGATCAGCATTTCTTTGCATCGGTGGAGAAA 1129 Query 1141 GCAAAGCATGTCCTCGGATGGAAACCAGAGTTCGACTTAGTGGAGGGTCTCACGGACTCA 1200 |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 1130 GCAAAGCATGTCCTCGGATGGAAACCGGAGTTCGACTTAGTGGAGGGTCTCACTGACTCA 1189 Query 1201 TACAACCTTGATTTCGGTCGCGGAACATTCCGAAAAGAAGCGGATTTCACCACTGACGAC 1260 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1190 TACAACCTTGATTTCGGTCGCGGAACATTCCGGAAAGAAGCGGATTTCACCACTGACGAC 1249 Query 1261 ATGATTCTGAGCAAGAAACTTGTTCTTCAATAATC-AA-TCCTAAGAAATATAAACATTC 1318 ||||||||||||||||||||||||||||||||||| || |||||||| | | ||||| Sbjct 1250 ATGATTCTGAGCAAGAAACTTGTTCTTCAATAATCGAAATCCTAAGAG-T-TGCTCATTC 1307 Query 1319 TTGGGTTGTATGATTCTGATCACGCGGTTCTCTTAAAGTTCTAAACTTTATTGTCATCTC 1378 |||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||| Sbjct 1308 TTGGCTTGTATGATTCTGATCACCCGGTTCTCTTAAAGTTCTGAACTTTATTGTCATCTC 1367 Query 1379 ACGTTCACGTGTGTTATGGTTCGGATTTTGTTCGACTTTTCTCTAAAGAAGTCAAGCTAG 1438 |||| | ||| | ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1368 ACGT--A--TGT-T-ATGGTCCGGATTTTGTTCGACTTTTCTCTAAAGAAGTCAAGCTAG 1421 Query 1439 GGACGATGAAGAAACC 1454 |||||||||||||||| Sbjct 1422 GGACGATGAAGAAACC 1437 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71686378260 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5