BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471034
Length=2110
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09420.2 | Symbols: G6PD4 | glucose-6-phosphate dehydrogenas... 2039 0.0
AT1G09421.1 | Symbols: | other RNA | chr1:3038631-3039326 FORW... 291 3e-77
> AT1G09420.2 | Symbols: G6PD4 | glucose-6-phosphate dehydrogenase
4 | chr1:3038469-3041873 REVERSE LENGTH=2237
Length=2237
Score = 2039 bits (1104), Expect = 0.0
Identities = 1265/1342 (94%), Gaps = 13/1342 (1%)
Strand=Plus/Plus
Query 1 CAGAAAACTTAAACTTGCACTCGTCTTCCAC-TTAAAGCAGCTTCAAAG-tttttttCAG 58
||||||||||||||||||||||||||||||| || | || ||| |||| ||| ||
Sbjct 60 CAGAAAACTTAAACTTGCACTCGTCTTCCACTTTGATCCA-CTT-AAAGCAGCTTTAAAG 117
Query 59 CTTCAAAGTTTTTTAGCTATAATCCCTGAGGAACTATCCTCATGTCTCTCTCCAGTTGCT 118
||| || | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CTTTGAACATGTTTAGCTATAATCCCTGAGGAACTATCCTCATGTCTCTCTCCAGTTGCT 177
Query 119 TGCTTCCCTTTTCTCAATCAGCGACGGCTCCATCGTCCTCCGTCTGCCCTTGCCACCTCG 178
||||||||||||||||||||||||||||||| || |||||||||||| ||||||| ||||
Sbjct 178 TGCTTCCCTTTTCTCAATCAGCGACGGCTCCGTCTTCCTCCGTCTGCTCTTGCCATCTCG 237
Query 179 CCGCCTCTTTTTCGAATTTTCCGGTTTCATCAAGAGACTATAGTTTCTCCAGAAATGGAA 238
||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 238 CCGCCTCTTTTTCTAATTTTCCGGTTTCGTCAAGAGACTATAGTTTCTCCAGAAGTGGAA 297
Query 239 GCCTTGTGCTCAACGGAGGAGGCTCGAATCTCTGCCGGAGATTCTGTGGGTTGAAACTGT 298
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 298 GCCTTGTTCTCAACGGAGGAGGCTCGAATCTCTGCCGGAGATTCTGTGGTTTGAAACTGT 357
Query 299 GGATACTTAAGAGCTTGAATCGTAGACAAGGCAACAACAGAAAATATCAGCCTGTAAACG 358
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 358 GGATACTTAAGAGCTTGAATCGTAGACAAGGCAACAACAGAAAACATCAGCCTGTAAACG 417
Query 359 AGCTTA-AAGCACGCTCAGAGCACACTTTTCTTAGC-A--ATGAACAAGGTTCTGCTGAA 414
|||||| || ||| |||| |||||||||| || ||| | |||||| ||||| |||||||
Sbjct 418 AGCTTACAA-CACACTCAAAGCACACTTTCCTCAGCGATGATGAACGAGGTTTTGCTGAA 476
Query 415 GAAACTGGAGCTGCAGATTTACGACCAGAAGAGCATATTCTAGGAACTGATTTGAATGAT 474
|||||| |||||| ||||||||||||||||||| ||||||| ||||| ||||||||||||
Sbjct 477 GAAACTAGAGCTGAAGATTTACGACCAGAAGAGAATATTCTGGGAACGGATTTGAATGAT 536
Query 475 GGTTTTCACAGA-GTTGGAGACTTACCACCTGTGTCAAAACAATTCTCGGACGGTCGTTC 533
|| ||||||| | |||||||||||||||||||||||||||||| ||||||| | || |||
Sbjct 537 GGGTTTCACA-ATGTTGGAGACTTACCACCTGTGTCAAAACAACTCTCGGATGATCTTTC 595
Query 534 AGATGTTCGAAG-AGAGGCCTCGCTTTGCATTGCTGTTGTAGGAGCTACTGGTGAGCTAG 592
|||||||||||| || |||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 596 AGATGTTCGAAGAAG-GGCCTCACTTTGCATTGCTGTTGTAGGAGCCACTGGTGAGCTAG 654
Query 593 CAAGAGGGAAGATTTTTCCGGCATTGTTTGCGTTGTATTATAGCGGCTACCTTCCTGAGG 652
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 CAAGAGGGAAGATTTTCCCGGCATTGTTTGCGTTGTATTATAGCGGCTACCTTCCTGAGG 714
Query 653 ATGTTGCTATTTTTGGGGTTTCAAGAAAGAATCTGACAGATGAAGACCTCAGATCCATCA 712
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 ATGTTGCTATATTTGGGGTTTCAAGAAAGAATCTGACAGATGAAGACCTCAGATCCATCA 774
Query 713 TCGCATCAACTCTGACTTGCCGCGTTGATCATCAGGAAAATTGCGGGGACAAGATGGATG 772
| |||||||| ||||||||||| |||||||||||||| ||||| |||| |||||||||||
Sbjct 775 TTGCATCAACGCTGACTTGCCGTGTTGATCATCAGGAGAATTGTGGGGGCAAGATGGATG 834
Query 773 CATTTCTTAGTAGAACATACTATATCGATGGAGGTTACAATAACAGGGATGGGATGTCCC 832
|||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 835 CATTTCAGAGTAGAACATACTATATCAATGGAGGTTATAATAACAGGGATGGGATGTCCC 894
Query 833 GACTTGCCGAGAGAATGAAACAGATTGAGGGAGAATCAGAAGCCAATAGGCTCTTTTACC 892
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 895 GACTTGCCGAGAGAATGAAACAGATTGAGGGAGAATCAGAAGCAAATAGAATCTTTTACC 954
Query 893 TCTCAGTACCTCAAGAAGCTCTGGTGGATGTGGCATGCACCATTGGAGATAATGCTCAGG 952
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 955 TCTCAGTACCTCAAGAAGCTCTGGTGGATGTGGCATGCACCATTGGAGATAACGCTCAGG 1014
Query 953 CACCACGAGGCTGGACTCGTATAATAGTAGAGAAACCTTTTGGTTTTAACTCACATTCGT 1012
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1015 CACCACGAGGCTGGACTCGAATAATAGTTGAGAAACCTTTTGGTTTTAACTCACATTCGT 1074
Query 1013 CTCATCAGTTAACAAAGTCACTTCTCTCTAAGTTTGAAGAGAAGCAAATCTACAGGATAG 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 CTCATCAGTTAACAAAGTCACTTCTCTCTAAGTTTGAAGAGAAGCAAATCTACAGGATAG 1134
Query 1073 ATCACATGTTAGGAAGAAACCTCATTGAAAATCTGACAGTGTTAAGGTTTTCAAATCTAG 1132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 ATCACATGTTAGGAAGAAACCTCATTGAAAATCTGACAGTGTTAAGGTTTTCAAATCTAG 1194
Query 1133 TTTTTGAACCACTATGGAACAGAACATACATACGCAATATACAGGTTATTGTATCAGAAT 1192
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1195 TTTTTGAACCACTATGGAACAGAACATACATACGCAATATACAGGTTATTATATCAGAAT 1254
Query 1193 CAATTGCGCAAACAGAAAAGTATTCTGATGGATATGGAATAATACGGGATATAGTGCACA 1252
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1255 CAATTGCGCAAACAGAAAAGTTTTCTGATGGATATGGAATAATACGGGACATAGTGCACA 1314
Query 1253 GCCATATATTTCAGACAATCGCATTACTTGCCATGGAACCTCCTATAAGTCTCGATGGTG 1312
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1315 GCCATATACTTCAGACAATCGCATTACTTGCCATGGAACCTCCGATAAGTCTCGATGGTG 1374
Query 1313 AAGATATCCGAAATGAAAAGGT 1334
||||||||||||||||||||||
Sbjct 1375 AAGATATCCGAAATGAAAAGGT 1396
Score = 706 bits (382), Expect = 0.0
Identities = 394/400 (99%), Gaps = 0/400 (0%)
Strand=Plus/Plus
Query 1338 GGTTTTAAGATCAATTCGCAAAATAGACCCGCGTGATGTCATCCTTGGCCAGTATAAATC 1397
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1430 GGTTTTAAGATCAATTCGCAAGATAGACCCGCGTGATGTCATCCTTGGCCAGTATAAATC 1489
Query 1398 CAGTTCCCGAGACAAGAACGGTGTGATCTTAAACGGTGTAGACCCTACATATTGTGCAGC 1457
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1490 CAGTTCCCGAGACAAGAACGGTGTGATCTTGAACGGTGTAGACCCTACATATTGTGCAGC 1549
Query 1458 AGCCTTGTATATTGATAATGCACGTTGGGATGGTGTACCTTTCCTTATAAGAGTTGGCAC 1517
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1550 AGCCTTGTATATTGATAATGCACGTTGGGATGGTGTACCTTTCCTTGTAAGAGTTGGCAC 1609
Query 1518 TGGCCTCATTAAACACAGAGTGGAGATTCATGTGCAATTCCGGCATGTTCCTGGAAACCT 1577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 TGGCCTCATTAAACACAGAGTGGAGATTCATGTGCAATTCCGGCATGTTCCTGGAAACCT 1669
Query 1578 ATACCGAGAAAATATTGGAATAAACATAGATTTGGGGACAAATGAGCTTATTCTACGTGA 1637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1670 ATACCGAGAAAATATTGGAATAAACATAGATTTGGGGACAAATGAGCTTATTCTACGTGA 1729
Query 1638 CAAACCTGATGAGGCCATCCTGGTGAAAATCAACAACAAGGTTCCTGGTTTAGGTCTCCA 1697
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1730 CGAACCTGATGAGGCCATCCTGGTGAAAATCAACAACAAGGTTCCTGGTTTAGGTCTTCA 1789
Query 1698 GCTAGACGCTTCTGAACTTAACCTGCTCTATAAAGACAGG 1737
|||||||||||||||||||||| |||||||||||||||||
Sbjct 1790 GCTAGACGCTTCTGAACTTAACTTGCTCTATAAAGACAGG 1829
Score = 508 bits (275), Expect = 6e-143
Identities = 320/340 (94%), Gaps = 9/340 (3%)
Strand=Plus/Plus
Query 1767 AAGCGATGAGGTTGCAGCAGCATGGAACATTCTGAGTCCGGTTCTAGAAGAGATAGACAA 1826
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1907 AAGCGATGAGGTTGCAGCAGCATGGAACATTCTTAGTCCGGTTCTAGAAGAGATAGACAA 1966
Query 1827 GCACCACACAGCTCCGGAGTTGTATGAATTTGGTGGACGAGGACCAGTTGCGGCATACTA 1886
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1967 GCATCACACAGCTCCGGAGTTGTATGAATTTGGTGGACGAGGACCAGTTGCGGCATACTA 2026
Query 1887 TCTCTGGGCCAAGCACGGTGTCCCATGGGCAGATGACTGAAGGAGAAACATAGATGCAGC 1946
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2027 TCTTTGGGCCAAGCACGGTGTCCCATGGGCAGATGACTGAAGAAGAAACATAGATGCAGC 2086
Query 1947 AACATCCAAATGAGAATGATTCTGAATGGTTATTGTGAAGTGTGTGAAGTGGGTTTGTTT 2006
|||| ||||||||| ||||||||||||||||||||||||||||| | | ||||
Sbjct 2087 AACAAACAAATGAGAGTGATTCTGAATGGTTATTGTGAAGTGTGT----T---T--GTTT 2137
Query 2007 AGCTTGAAGCTGAACCATTCCCTGTAGACTGTACATATGTACACATGTATGACATGTTGC 2066
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2138 AGCTTGAAGCTGTGCCATTCCCTGTAGACTGTACATATGTACACATGTATGTCATGTTGC 2197
Query 2067 TGTATGAATGTCCATCATGGTGGGGTCCATAATAGTGTTG 2106
| ||||||||||||||||||||||||||||||||||||||
Sbjct 2198 TATATGAATGTCCATCATGGTGGGGTCCATAATAGTGTTG 2237
> AT1G09421.1 | Symbols: | other RNA | chr1:3038631-3039326 FORWARD
LENGTH=546
Length=546
Score = 291 bits (157), Expect = 3e-77
Identities = 165/169 (98%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 1767 AAGCGATGAGGTTGCAGCAGCATGGAACATTCTGAGTCCGGTTCTAGAAGAGATAGACAA 1826
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 169 AAGCGATGAGGTTGCAGCAGCATGGAACATTCTTAGTCCGGTTCTAGAAGAGATAGACAA 110
Query 1827 GCACCACACAGCTCCGGAGTTGTATGAATTTGGTGGACGAGGACCAGTTGCGGCATACTA 1886
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 109 GCATCACACAGCTCCGGAGTTGTATGAATTTGGTGGACGAGGACCAGTTGCGGCATACTA 50
Query 1887 TCTCTGGGCCAAGCACGGTGTCCCATGGGCAGATGACTGAAGGAGAAAC 1935
||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 49 TCTTTGGGCCAAGCACGGTGTCCCATGGGCAGATGACTGAAGAAGAAAC 1
Score = 178 bits (96), Expect = 2e-43
Identities = 100/102 (98%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 1639 AAACCTGATGAGGCCATCCTGGTGAAAATCAACAACAAGGTTCCTGGTTTAGGTCTCCAG 1698
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 355 AAACCTGATGAGGCCATCCTGGTGAAAATCAACAACAAGGTTCCTGGTTTAGGTCTTCAG 296
Query 1699 CTAGACGCTTCTGAACTTAACCTGCTCTATAAAGACAGGCAA 1740
||||||||||||||||||||| ||||||||||||||||||||
Sbjct 295 CTAGACGCTTCTGAACTTAACTTGCTCTATAAAGACAGGCAA 254
Score = 143 bits (77), Expect = 8e-33
Identities = 79/80 (99%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 1456 GCAGCCTTGTATATTGATAATGCACGTTGGGATGGTGTACCTTTCCTTATAAGAGTTGGC 1515
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 546 GCAGCCTTGTATATTGATAATGCACGTTGGGATGGTGTACCTTTCCTTGTAAGAGTTGGC 487
Query 1516 ACTGGCCTCATTAAACACAG 1535
||||||||||||||||||||
Sbjct 486 ACTGGCCTCATTAAACACAG 467
Score = 82.4 bits (44), Expect = 2e-14
Identities = 44/44 (100%), Gaps = 0/44 (0%)
Strand=Plus/Minus
Query 1534 AGAGTGGAGATTCATGTGCAATTCCGGCATGTTCCTGGAAACCT 1577
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 AGAGTGGAGATTCATGTGCAATTCCGGCATGTTCCTGGAAACCT 350
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104617935780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5