BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471036
Length=1711
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09430.1 | Symbols: ACLA-3 | ATP-citrate lyase A-3 | chr1:30... 2350 0.0
AT1G10670.3 | Symbols: ACLA-1 | ATP-citrate lyase A-1 | chr1:35... 71.3 3e-11
> AT1G09430.1 | Symbols: ACLA-3 | ATP-citrate lyase A-3 | chr1:3041996-3045402
FORWARD LENGTH=1838
Length=1838
Score = 2350 bits (1272), Expect = 0.0
Identities = 1470/1563 (94%), Gaps = 23/1563 (1%)
Strand=Plus/Plus
Query 81 TGTTGAGGACGATCACTGTTTGTAATTCGATGGCGAGGAAGAAGATCAGAGAGTATGACT 140
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 111 TGTTGAGGACGATCACTGTTTGTAATTCGATGGCGAGGAAGAAGATCAGAGAATATGACT 170
Query 141 CCAAGAGACTTCTCAAGGAACATTTGAAGCGTCTCGCTAACATTGACCTGCAGATTCGCT 200
||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct 171 CCAAGAGACTTCTCAAGGAGCATTTGAAGCGTCTTGCTAATATTGACCTGCAGATTCGCT 230
Query 201 CTGCTCAGGTGACAGAATCTACTGATTTCACTGAGTTGACCAACCAGCAGTTATGGCTAT 260
|||||||||||||||||||||| |||||||||||||| ||||||||| ||| ||||||||
Sbjct 231 CTGCTCAGGTGACAGAATCTACGGATTTCACTGAGTTAACCAACCAGGAGTCATGGCTAT 290
Query 261 CGTCCACAAAGCTAGTTGTGAAACCTGATATGCTATTTGGGAAACGCGGTAAAAGTGGCT 320
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
Sbjct 291 CGTCCACAAAGCTAGTTGTGAAACCGGATATGCTATTTGGGAAACGCGGGAAAAGTGGTT 350
Query 321 TGGTAGCTCTGAAGCTGGATCTTGCTGAAGTTGCAGAGTTTGTCAAAGCCCGCCTCGGTA 380
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 351 TGGTAGCTCTAAAGCTGGATCTTGCTGAAGTTGCAGACTTTGTCAAAGCCCGCCTCGGCA 410
Query 381 CTGAGGTTGAGATGGAGGGATGTAAAGCTCCTATCACTACATTCATTGTGGAGCCTTTTG 440
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 411 CTGAGGTCGAGATGGAGGGATGTAAAGCACCTATCACTACATTCATTGTGGAGCCTTTTG 470
Query 441 TGCCTCATGATCAAGAATACTACCTTTCTATACTATCTGATAGGCTTGGCTGCACTATAA 500
||||||||||||||||||||||||| |||||| |||||||||| ||||| ||||||||||
Sbjct 471 TGCCTCATGATCAAGAATACTACCTCTCTATAGTATCTGATAGACTTGGATGCACTATAA 530
Query 501 GCTTCTCTGAATGTGGTGGCATTGAAATTGAAGAGAACTGGGACAAAGTGAAGACTATAT 560
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 531 GCTTCTCTGAATGTGGTGGCATTGAAATAGAAGAGAATTGGGACAAAGTGAAGACTATAT 590
Query 561 TTCTTCCTGCGGAGAAGTCAATGATGCTAGAAGTATGTGCTCCATTGATAGCAACTCTTC 620
||||||||||||| ||||| |||| ||||||||||||||||||||| |||||||||||||
Sbjct 591 TTCTTCCTGCGGAAAAGTCGATGACGCTAGAAGTATGTGCTCCATTAATAGCAACTCTTC 650
Query 621 CTCTTGAGGTTCGAGCTAAAATTGGTAACTTCATAATGGGTGCGTTTGCTGTATTTCAAG 680
|||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||
Sbjct 651 CTCTTGAGGTTCGAGCTAAAATCGGCAACTTCATAATGGGTGCCTTTGCTGTATTTCAAG 710
Query 681 ATTTGGATTTCAGTTTTATGGAGATGAATCCTTTTACACTAGTCGATGGAGAGCCATACC 740
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 711 ATTTGGATTTCAGTTTTATGGAGATGAATCCTTTTACACTAGTCGATGGAGAACCATTCC 770
Query 741 CTCTGGATATGAGGGGAGAGTTAGATGACACTGCTGCCTTCAAGAATTTCAACAAGTGGG 800
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 771 CTCTGGATATGAGAGGAGAATTAGATGACACTGCTGCCTTCAAGAATTTCAACAAGTGGG 830
Query 801 GAGACATTGAATTTCCTCTACCATTTGGAAGGGTCCTCAGTTCGACGGAGAACTTCATCC 860
||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||
Sbjct 831 GAGACATTGAATTTCCTCTGCCATTTGGAAGGGTCCTCAGTTCTACAGAGAACTTCATCC 890
Query 861 ATGGTTTAGATGAGAAGACAAGTGCTTCTTTGAAGTTCACTGTTTTGAATCCTAAAGGCC 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 ATGGTTTAGATGAGAAGACAAGTGCTTCTTTGAAGTTCACTGTTTTGAATCCTAAAGGCC 950
Query 921 GCATTTGGACGATGGTAGCTGGAGGTGGTGCTAGCGTCATATATGCTGATACAGTTGGGG 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 GCATTTGGACGATGGTAGCTGGAGGTGGTGCTAGCGTCATATATGCTGATACAGTTGGGG 1010
Query 981 ATTTAGGTTATGCATCAGAGCTCGGGAACTACGCAGAGTATAGTGGAGCACCTAATGAGG 1040
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1011 ATTTAGGTTATGCATCAGAGCTTGGAAACTACGCAGAGTATAGTGGAGCACCTAATGAGG 1070
Query 1041 AAGAGGTGTTACAATATGCAAGAGTTGTCATTGATTGTGCCACTGCTGATCCTGACGGGC 1100
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1071 AAGAGGTGTTACAATATGCAAGAGTTGTCATTGATTGTGCCACTACTGATCCTGACGGGC 1130
Query 1101 GTAAACGAGCTCTTCTAATTGGAGGAGGCATTGCCAACTTCACCGATGTGGCAGCTACTT 1160
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1131 GTAAACGAGCTCTTCTAATTGGAGGAGGCATTGCCAATTTCACTGATGTGGCAGCTACTT 1190
Query 1161 TCAACGGTATCATTCGAGCGCTAAGAGAAAAGGAAACAAGATTGAAAGCATCAAGAATGC 1220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 TCAACGGTATCATTCGAGCGCTAAGAGAAAAGGAAACAAGATTGAAAGCATCAAGAATGC 1250
Query 1221 ACATTTATGTAAGGAGAGGTGGACCAAATTACCAGACTGGTTTGGCCAGAATGCGAGCTC 1280
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1251 ACATTTACGTAAGGAGAGGTGGACCAAATTACCAGACTGGTTTGGCTAGAATGCGAGCTT 1310
Query 1281 TGGGAGAGGAACTTGGTGTCCCTCTAGAGGTATATGGTCCAGAAGCAACGATGACGGGAA 1340
| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1311 TAGGAGAGGAACTTGGTGTCCCTCTAGAGGTATATGGTCCAGAGGCAACAATGACGGGAA 1370
Query 1341 TATGCAAACGAGCCATTGACTGCATCATGTTACCTGATGCATAACCAACCCAAACCTTTG 1400
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1371 TATGCAAACGAGCCATTGACTGCATCATGTTGCCTGATGCATAACCTACCCAAACCTTTT 1430
Query 1401 ATCTCTTCTTCAGTTTGAAAGCAGAATAAAAGCTTTGTAGCTGGATGTGTGAGTGAGTGT 1460
|||||||||||||||||||||||||| |||||||||| ||||||| | |||||||||||
Sbjct 1431 ATCTCTTCTTCAGTTTGAAAGCAGAACAAAAGCTTTGGAGCTGGACGAATGAGTGAGTGT 1490
Query 1461 GCGGTGATTCCTGTTCTTCATCTCTCT-TT-CCACGTAAGAAAATGAAAAGCTCTTTA-- 1516
||| || ||| |||||||||||| || |||| |||||||||||||| |||||||
Sbjct 1491 AAAATGAGTCATGTCCTTCATCTCTCTCTTTCCACATAAGAAAATGAAAATCTCTTTAAA 1550
Query 1517 --------------G--TGAGAATTTGAAAATTGTATCATTGTGTTGTAAGTGTAATTGT 1560
| || ||||||||||| ||||||||||||| ||||| ||||||||
Sbjct 1551 ACTTTTTTTCCACTGGGTGTGAATTTGAAAACTGTATCATTGTGT-GTAAGCGTAATTGT 1609
Query 1561 AATCAAACGCTCAAAATCCTTATTT-GAAATGTACAATAAGACTTCAAAAGTTTAATGTC 1619
||||| ||| ||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1610 AATCAGACGGTCAAAATCCTTATTTTGAAATGTACAATAAGACTTCAAAAGTT-AATGTT 1668
Query 1620 GCT 1622
|||
Sbjct 1669 GCT 1671
Score = 134 bits (72), Expect = 4e-30
Identities = 88/95 (93%), Gaps = 3/95 (3%)
Strand=Plus/Plus
Query 1618 TCGCTATACACACCAATCTATTATACTAATGTAA-GTGTTTCAAGACAAATCCAATTCCC 1676
||||| |||||||||||||||||||||||||||| | |||| |||||||||||||||||
Sbjct 1701 TCGCTCTACACACCAATCTATTATACTAATGTAAAG-GTTTGAAGACAAATCCAATTCC- 1758
Query 1677 ATATACAAACATGTCTATGTATATAATATATATCA 1711
||||||||||||||||||||||| ||||||| |||
Sbjct 1759 ATATACAAACATGTCTATGTATACAATATATGTCA 1793
Score = 121 bits (65), Expect = 3e-26
Identities = 76/81 (94%), Gaps = 1/81 (1%)
Strand=Plus/Plus
Query 1 TTGTGTTGATGAGATCATCTTCTGCTCAACTTCATCGATCTTATCGTCTCGAAAGTTGTC 60
||| |||| |||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1 TTGAGTTGGTGAGATCATCTTCTTCTCAACTTCATCGATCTTATCGTCTCGAAAATTGTC 60
Query 61 ACCTTTT-TTCTCAGCTACTT 80
||||||| |||||||||||||
Sbjct 61 ACCTTTTCTTCTCAGCTACTT 81
> AT1G10670.3 | Symbols: ACLA-1 | ATP-citrate lyase A-1 | chr1:3535383-3538281
FORWARD LENGTH=1724
Length=1724
Score = 71.3 bits (38), Expect = 3e-11
Identities = 51/57 (89%), Gaps = 2/57 (4%)
Strand=Plus/Plus
Query 110 ATGGCGAGGAAGAAGATCAGAGAGTATGACTCCAAGAGACTTC-TCAAGGAACATTT 165
|||||||||||||||||||||||||||||||| ||||| || | |||||||||||
Sbjct 210 ATGGCGAGGAAGAAGATCAGAGAGTATGACTCAAAGAGG-TTGGTGAAGGAACATTT 265
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84587918325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5