BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471040
Length=1187
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09470.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1855 0.0
AT1G09483.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 414 8e-115
AT1G09460.1 | Symbols: | Carbohydrate-binding X8 domain superf... 154 2e-36
> AT1G09470.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; EXPRESSED IN: cotyledon; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT5G26770.1);
Has 55019 Blast hits to 30094 proteins in 2088 species:
Archae - 730; Bacteria - 6553; Metazoa - 28961; Fungi -
4800; Plants - 2559; Viruses - 111; Other Eukaryotes - 11305
(source: NCBI BLink). | chr1:3055231-3056974 REVERSE LENGTH=1214
Length=1214
Score = 1855 bits (1004), Expect = 0.0
Identities = 1109/1161 (96%), Gaps = 1/1161 (0%)
Strand=Plus/Plus
Query 27 CAGACAATGCCAACTTCTGTTAGTCTAAGAGAGGATGATCCTTTGTTGAAGGATCTGAGT 86
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 38 CAGAAAATGCCAACTTCTGTTAGTCTAAGAGAGGATGATCCTTTGTTGAAGGATTTGAGT 97
Query 87 GAGAAGAAGCAGAGTTTCAGGAGAAATGTTGTGTCTTTGGCCACTGAGTTGAAAGAAGCG 146
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 98 GAGAAGAAGCAGAGTTTCAGGAGAAATGTGGTGTCTTTGGCCACTGAGTTGAAAGAAGCG 157
Query 147 AGGACTCGTCTTGCGGAACAGGAGCGGTCGTGTTCACAAGAAGCCATGTCTAGGCAGGAG 206
|||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||
Sbjct 158 AGGACTCGTCTTGCGGAACAGGAGCGGTCGTGTTCAAAAGAAGCTATGTCCAGGCAGGAG 217
Query 207 GCAGAAACAAGAGTTAAGAGAATGGAAGATGAAATGCATGAACTTGCTAAGGAACTAAAC 266
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 218 GCAGAAACAAGAGTTAAGAGAATGGAAGATGAAATGCATGAACTTGCCAAGGAACTAAAC 277
Query 267 AAGAAAGTTGAGCAGATTCGTGCATCGGATGTTGCTACTGAGAAGTTTGTGAAGGAATTG 326
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 278 GAGAAAGTTGAGCAGATTCGTGCTTCGGATGTTGCTACTGAGAAGTTTGTGAAGGAATTG 337
Query 327 GGTGATATCAAGTCACAGCTTGCAGCAACACATGCAACTGCAGAGGCAAGTGCTTTGTCA 386
| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 338 GCTGATATCAAATCACAGCTAGCAGCAACACATGCAACTGCAGAGGCAAGTGCTTTGTCA 397
Query 387 GCTGAATCAGCACAGTCTCAGTGTAGAGTGCTTTCGAAACAATTGCATGAGAGGACCGGT 446
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 398 GCTGAATCAGCACATTCTCATTGTAGAGTGCTTTCGAAACAATTGCATGAGAGGACCGGT 457
Query 447 CCTTTAAAAGACCATGAGGACCAAGTTACTAGACTTGGTGAGCAGCTAGAGAATCTACGA 506
|||| ||||| |||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 458 TCTTTGAAAGAGCATGAGGACCAAGTAACTAGACTTGGTGAGCAGCTAGAGAATCTAAGA 517
Query 507 AATGAGCTGCAAGCTAGAGAATCTTCACAGAAGCAGCTAAGAGATGAGGTTTTGAAAGTT 566
|| ||||||| || |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 518 AAGGAGCTGCGAGTTAGAGAATCTTCACAGAAGCAGCTAAGAGATGAGCTTTTGAAAGTT 577
Query 567 GAAGGTGACATTATGCGGGCTCTATCAGTGGTCAAGACCAAGGAGAATTCTGAGGTGCGG 626
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 578 GAAGGTGACATTATGCGGGCTGTATCAGTGGTCAAGACCAAGGAGAACTCTGAGGTGCGG 637
Query 627 AAAATGCTAAATGAAGATCCTCCAAAGAATTTTGAAAGAATCAACAAACTTTTGACGGCT 686
|| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 638 AACATGCTAAATGAAGATACTCCAAAGAATTCTGAAAGAATCAACAAACTTTTGACGGCT 697
Query 687 AAAGATGATGAAATTGCAAGACTCAGAGATGAACTAAAGATTATATCGGCTCATTGGAGG 746
||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct 698 AAAGATGATGAAATTGCAAGACTGAGAGATGAACTGAAGATTATATCGGCTCACTGGAGG 757
Query 747 TTTAAGACAAAGGAATTAGAAGATCAGGTGGAGAATCAAAGGAGAATCGATCAGGAGCTG 806
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 758 TTTAAGACCAAGGAATTAGAAGATCAGGTGGAGAATCAAAGGAGAATTGATCAGGAGCTG 817
Query 807 AAGAAGAAGGTGCTGAAGTTAGAATTTTGCTTACGCGAAACACGCATCCAAACTCGAAAA 866
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 818 AAGAAGAAGGTGCTGAAGTTAGAATTTTGCCTACGAGAAACACGCATCCAAACTCGAAAA 877
Query 867 CTTCAAAAGATGGGAGAGCGAAACGATGTAGCAATACAAGAACTCAAGGAGCAATTGGCT 926
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 878 CTTCAAAAGATGGGAGAGCGAAACGATGTGGCAATACAAGAACTCAAGGAGCAATTGGCT 937
Query 927 GCaaaaaaaCAGCATGAAGCTGATCTTTCTAGCAACCAAAACTTGTGGGATAAATCAGGT 986
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 938 GCAAAAAAACAGCATGAAGCTGATCATTCTAGCAACCAAAACTTGTGGGACAAATCAGGT 997
Query 987 TTCAAGATTGTTGTCTCCATGTCGATGCTGATATTAGTTGCCTTTTCTAGGCGTTGAATT 1046
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 998 TTCAAGATTGTTGTCTCCATGTCAATGCTGATATTAGTTGCGTTTTCTAGGCGTTGAATT 1057
Query 1047 AGCAATGAAAACATTTTAGATCATATTAAAGTAGATAGACCGTATCCTACAGTGTATGGA 1106
||| |||||| ||||||||||||||||||| ||| ||||| ||| ||| ||||||||| |
Sbjct 1058 AGCGATGAAATCATTTTAGATCATATTAAAATAGTTAGACAGTACCCTCCAGTGTATGAA 1117
Query 1107 GGAATAATATTACACCTCTTTGTTACAATGTCTGAGTTTCCGCTTTTGGTCCTAAAGAGA 1166
||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1118 GGATTAAGAT-ACACCTCTTTGTTACAATGTCTGAGTTTCCGCTTTTGGTCCTAAAGAGA 1176
Query 1167 TATATTTAAAACAAAACAACC 1187
||||||||||||||| |||||
Sbjct 1177 TATATTTAAAACAAATCAACC 1197
> AT1G09483.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G09470.1);
Has 48 Blast hits to 48 proteins in 9 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:3060992-3061729
REVERSE LENGTH=339
Length=339
Score = 414 bits (224), Expect = 8e-115
Identities = 246/256 (96%), Gaps = 3/256 (1%)
Strand=Plus/Plus
Query 732 TCGGCTCATTGGAGGTTTAAGACAAAGGAATTAGAAGATCAGGTGGAGAATCAAAGGAGA 791
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 TCGGCTCATTGGACGTTTAAGACAAAGGAATTAGAAGATCAGGTGGAGAATCAAAGGAGA 63
Query 792 ATCGATCAGGAGCTGAAGAAGAAGGTGCTGAAGTTAGAATTTTGCTTACGCGAAACACGC 851
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 64 ATTGATCAGGAGCTGAAGAAGAAGGTGCTGAAGTTAGAATTTTGCCTACGCGAAACACGC 123
Query 852 ATCCAAACTCGAAAACTTCAAAAGATGGGAGAGCGAAACGATGTAGCAATACAAG-A--A 908
|||||||||||||||||||||||||||||||||||||||||| | |||||||||| | |
Sbjct 124 ATCCAAACTCGAAAACTTCAAAAGATGGGAGAGCGAAACGATATGGCAATACAAGAAGTA 183
Query 909 CTCAAGGAGCAATTGGCTGCaaaaaaaCAGCATGAAGCTGATCTTTCTAGCAACCAAAAC 968
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 CTCAACGAGCAATTGGCTGCAAAAAAACAGCATGAAGCTGATCTTTCTAGCAACCAAAAC 243
Query 969 TTGTGGGATAAATCAG 984
|||||||| |||||||
Sbjct 244 TTGTGGGACAAATCAG 259
> AT1G09460.1 | Symbols: | Carbohydrate-binding X8 domain superfamily
protein | chr1:3053901-3055360 FORWARD LENGTH=1263
Length=1263
Score = 154 bits (83), Expect = 2e-36
Identities = 104/114 (91%), Gaps = 1/114 (1%)
Strand=Plus/Minus
Query 1074 AAAGTAGATAGACCGTATCCTACAGTGTATGGAGGAATAATATTACACCTCTTTGTTACA 1133
||| ||| ||||| ||| ||| ||||||||| |||| ||| | |||||||||||||||||
Sbjct 1263 AAAATAGTTAGACAGTACCCTCCAGTGTATGAAGGATTAAGA-TACACCTCTTTGTTACA 1205
Query 1134 ATGTCTGAGTTTCCGCTTTTGGTCCTAAAGAGATATATTTAAAACAAAACAACC 1187
|||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1204 ATGTCTGAGTTTCCGCTTTTGGTCCTAAAGAGATATATTTAAAACAAATCAACC 1151
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58282832745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5