BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471076
Length=1504
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09750.1 | Symbols: | Eukaryotic aspartyl protease family p... 2170 0.0
> AT1G09750.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr1:3157501-3159148 FORWARD LENGTH=1578
Length=1578
Score = 2170 bits (1175), Expect = 0.0
Identities = 1315/1383 (95%), Gaps = 7/1383 (1%)
Strand=Plus/Plus
Query 1 TCTACACAATCACATTATCCCAAAACCATGGCCTCCTCAAGTCTCCATttcttcttcttc 60
||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||
Sbjct 15 TCTACACAATCACATTA-GCCAAAACCATGGCCTCCTCAAGTCTCCA--T-TTCTTCTTC 70
Query 61 ttcttgacacttctcttGCCGTTCACTCTCACCACCGCCACACGTGACACTTGTGCTACA 120
|||||||||||||||||||| |||||| |||||||||||||||||||||| ||||| ||
Sbjct 71 TTCTTGACACTTCTCTTGCCATTCACTTTCACCACCGCCACACGTGACACATGTGCGACC 130
Query 121 GCCGCTCCCGACGGCTCCGACGACCTCTCAATCATCCCCATTAACGCTAAATGCTCACCT 180
||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 131 GCCGCTCCCGATGGTTCCGACGACCTCTCAATCATCCCCATTAACGCCAAATGCTCACCT 190
Query 181 TTCGCACGCTCTCACGTCTCTGCCTCCGTGATAGACACCGTCCTCCACATGGCCTCCTCA 240
||||||| | |||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 191 TTCGCACCCACTCACGTCTCTGCCTCCGTGATAGACACGGTCCTTCACATGGCCTCCTCA 250
Query 241 GACTCCCACCGGTTCACCTACCTCTCAAGCCTCGTCGCCGGAAAACCAAAACCAACCTCC 300
|||||||| || |||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 251 GACTCCCATCGACTCACCTACCTCTCAAGCCTCGTCGCCGGCAAACCAAAACCCACCTCC 310
Query 301 GTCCCCGTCGCCTCCGGTAACCAGCTCCACATCGGAAACTACGTGGTCCGAGCCAGACTC 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 311 GTCCCCGTCGCCTCCGGTAATCAGCTCCACATCGGAAACTACGTGGTCCGAGCCAAACTC 370
Query 361 GGCACTCCTCCACAGCTCATGTTCATGGTCCTAGACACAAGTAACGACGCCGTTTGGCTC 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GGCACTCCTCCACAGCTAATGTTCATGGTCCTAGACACAAGTAACGACGCCGTTTGGCTC 430
Query 421 CCTTGCTCCGGCTGCTCTGGCTGTTCCAACGCCTCAACCTCCTTCAATACGAACTCCTCC 480
||||||||||||||||| || ||||||||||||||||| || |||||||| ||||||||
Sbjct 431 CCTTGCTCCGGCTGCTCCGGTTGTTCCAACGCCTCAACTTCTTTCAATACAAACTCCTCA 490
Query 481 TCCACTTACTCAACCGTCTCTTGCTCCACCGCACAATGCACACAAGCACGTGGCCTCACG 540
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 491 TCCACTTACTCAACCGTCTCTTGCTCCACCGCACAATGCACCCAAGCACGTGGCCTCACG 550
Query 541 TGCCCATCCTCCTCACCACAACCGTCCATCTGCTCATTCAACCAATCCTACGGCGGAGAT 600
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 551 TGCCCATCCTCCTCACCACAACCGTCCGTCTGCTCCTTCAACCAATCCTACGGCGGAGAT 610
Query 601 TCATCCTTCTCCGCCAATCTCGTCCAAGACACGCTGACGCTATCCCCTGACGTCATCCCA 660
||||||||||| |||| |||||||||||||||||| ||| || |||||||||||||||||
Sbjct 611 TCATCCTTCTCTGCCAGTCTCGTCCAAGACACGCTAACGTTAGCCCCTGACGTCATCCCA 670
Query 661 AATTTCTCCTTCGGCTGCATCAACTCTGCCTCAGGCAATTCTCTACCTCCACAAGGACTA 720
|||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 671 AATTTCTCCTTCGGCTGCATCAACTCCGCCTCAGGCAATTCTCTACCACCGCAAGGACTA 730
Query 721 ATGGGCCTGGGACGCGGGCCCATGTCGTTGGTCTCCCAAACGACGTCACTTTACTCAGGA 780
|||||||| ||||||||||| ||||| |||||||| ||||| ||||| ||||||||||||
Sbjct 731 ATGGGCCTAGGACGCGGGCCTATGTCATTGGTCTCTCAAACTACGTCGCTTTACTCAGGA 790
Query 781 GTGTTCTCCTACTGCCTCCCTAGCTTCAGGTCATTCTACTTCTCCGGGTCGTTGAAACTG 840
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 791 GTGTTCTCATACTGCCTCCCTAGCTTCAGGTCCTTCTACTTCTCCGGGTCGTTGAAACTG 850
Query 841 GGTCTCCTGGGTCAACCCAAATCCATCAGATACACTCCACTCCTCCGTAATCCTCGCCGT 900
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 851 GGTCTCTTGGGTCAACCCAAATCCATCAGATACACTCCACTCCTCCGTAACCCTCGCCGT 910
Query 901 CCATCACTTTACTATGTCAATCTCACCGGAGTGAGTGTCGGTTCCGTCCAGGTGCCCGTT 960
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 911 CCATCACTTTACTATGTGAATCTCACCGGAGTGAGTGTCGGTTCCGTCCAGGTACCCGTT 970
Query 961 GACCCAGTGTATTTGACGTTTGACTCGAATTCCGGCGCCGGAACGATCATCGATTCCGGT 1020
|||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||
Sbjct 971 GACCCAGTGTATTTGACGTTTGACGCAAATTCCGGCGCCGGTACGATCATCGATTCCGGT 1030
Query 1021 ACTGTTATCACCCGTTTTGCTCAACCCGTTTACGAGGCCATTAGAGACGAGTTTAGGAAG 1080
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1031 ACTGTTATCACCCGTTTTGCTCAACCCGTGTACGAAGCCATTAGAGACGAGTTTAGGAAG 1090
Query 1081 CAGGTGAATG-G--GTCATTCTCAACATTGGGAGCGTTTGACACGTGTTTCTCGGCGGAT 1137
|||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1091 CAGGTGAATGTGTCGTCATTCTCAACATTGGGAGCGTTTGACACGTGTTTCTCAGCGGAT 1150
Query 1138 AACGAGAATGTGGCGCCAAAGATAACGCTGCACATGACGTCACTCGACTTGAAGCTGCCG 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 AACGAGAATGTGGCGCCAAAGATAACGCTGCACATGACGTCACTCGACTTGAAGCTGCCG 1210
Query 1198 ATGGAGAATACGCTCATCCACAGCAGCGCGGGAACGCTGACGTGTCTATCCATGGCGGGG 1257
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1211 ATGGAGAATACGCTTATCCACAGCAGCGCGGGAACGCTGACGTGTCTATCCATGGCCGGG 1270
Query 1258 ATACGGCAGAACGCGAACGCTGTTCTAAACGTGATCGCTAATCTCCAACAGCAGAACTTA 1317
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1271 ATACGGCAGAACGCAAACGCTGTTCTAAACGTGATCGCGAATCTCCAACAGCAGAACTTA 1330
Query 1318 AGGATCTTGTTTGACGTTCCTAATTCTCGCTTAGGAATTGCTCCTGAGCCCTGCAACTAA 1377
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1331 AGGATCTTGTTTGACGTTCCTAATTCTCGCATAGGAATTGCTCCTGAGCCCTGCAACTAA 1390
Query 1378 GAG 1380
|||
Sbjct 1391 GAG 1393
Score = 134 bits (72), Expect = 3e-30
Identities = 80/84 (95%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 1421 TTGACCTTCCACATATACTTTGTATGTACGGCTATCTTCACTACGCATAACATGGCCTGC 1480
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1478 TTGACCTTCTACATATACTTTGTATGAACGGCTATCTTCACTACGCATAACATGGCCTGC 1537
Query 1481 AGTTTCATCTCTTGCTCCAGAGAT 1504
|||||||||||||||| ||| |||
Sbjct 1538 AGTTTCATCTCTTGCTTCAGCGAT 1561
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74196405510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5