BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471096
Length=1641
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09850.1 | Symbols: XBCP3 | xylem bark cysteine peptidase 3 ... 2490 0.0
AT1G09860.1 | Symbols: ATPUP16, PUP16 | purine permease 16 | ch... 228 2e-58
> AT1G09850.1 | Symbols: XBCP3 | xylem bark cysteine peptidase
3 | chr1:3201799-3204150 FORWARD LENGTH=1638
Length=1638
Score = 2490 bits (1348), Expect = 0.0
Identities = 1552/1648 (94%), Gaps = 24/1648 (1%)
Strand=Plus/Plus
Query 1 CCAAAACTATCTCCACGATTCTaa-aaa-aaaTAA-TACAGAAAAATGTCAATGTCATCG 57
|||||||||||||||||||||||| ||| ||| || ||||| |||||||||||||||||
Sbjct 8 CCAAAACTATCTCCACGATTCTAACAAACAAA-AATTACAG--AAATGTCAATGTCATCG 64
Query 58 tcctcctttgtctctctcactttcttcttcctttttctcgtttcttcaccttcatcttcc 117
||||||||| ||||||||||||||||||||||| |||||||||||||| | |||||||||
Sbjct 65 TCCTCCTTTATCTCTCTCACTTTCTTCTTCCTTCTTCTCGTTTCTTCATCGTCATCTTCC 124
Query 118 GATGACATCTCCGAGCTGTTCGACGACTGGTGCCAGAGACATGGCAAAACTTACGGTTCA 177
||||||||||| ||||| ||||||||||||||||||| |||||||||||| |||||||||
Sbjct 125 GATGACATCTCTGAGCTATTCGACGACTGGTGCCAGAAACATGGCAAAACGTACGGTTCA 184
Query 178 GAAGAAGAGAGGCAACAGAGGATTCAAATCTTTAAAGATAATCACGACTTCGTTACCCAA 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 185 GAAGAAGAGAGGCAACAGAGGATTCAAATCTTTAAAGATAATCACGACTTCGTTACGCAA 244
Query 238 CACAATCGCATCACTAATGCTACTTATTCCCTCTCTCTCAATGCCTTCGCGGATCTGACT 297
||||||| ||||||||| |||||||| || |||||||||||||| |||||||||||||||
Sbjct 245 CACAATCTCATCACTAACGCTACTTACTCTCTCTCTCTCAATGCTTTCGCGGATCTGACT 304
Query 298 CACCACGAGTTCAAGGCTTCTCGTCTTGGACTCTCTGTTTCCGCTCCGTCGGTGATAATG 357
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 305 CACCACGAGTTCAAGGCTTCTCGTCTTGGTCTCTCTGTTTCCGCTCCGTCGGTGATAATG 364
Query 358 GCTAGTAAGGGACAGAGTCTGGGTGGTAGCGCAAAGGTTCCAGATTCTGTTGATTGGAGG 417
|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 365 GCTAGTAAGGGACAGAGTCTCGGTGGTAGCGTAAAGGTTCCAGATTCTGTTGATTGGAGA 424
Query 418 AAGAAAGGAGCTGTTACTAATGTCAAAGATCAAGGAAGCTGCGGGGCATGTTGGTCGTTC 477
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 AAGAAGGGAGCTGTTACTAATGTCAAAGATCAAGGAAGCTGCGGGGCATGTTGGTCGTTC 484
Query 478 TCGGCGACTGGAGCTATGGAGGGAATCAACCAGATTGTAACAGGAGATCTCATCAGCCTC 537
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 485 TCGGCGACTGGAGCTATGGAGGGAATTAACCAGATAGTAACAGGAGATCTCATCAGCCTC 544
Query 538 TCTGAGCAGGAACTGGTTGATTGTGACAAGTCCTACAATGCTGGCTGCAATGGTGGTCTC 597
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 545 TCTGAGCAGGAACTGATTGATTGTGACAAGTCCTACAATGCTGGCTGTAATGGTGGTCTC 604
Query 598 ATGGACTATGCTTTCGAATTCGTCATAAAAAACCATGGTATAGACACAGAGAAAGACTAT 657
|||||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 605 ATGGACTATGCTTTTGAATTTGTCATTAAAAACCATGGAATAGACACAGAGAAAGACTAT 664
Query 658 CCTTATCAAGAACGTGATGGCACCTGTAAGAAGGATAAGTTGAAACAAAAGGTTGTGACA 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 CCTTATCAAGAACGTGATGGCACCTGTAAGAAGGATAAGTTGAAACAAAAGGTTGTGACA 724
Query 718 ATTGATAGCTATGCTGGTGTAAAATCCAATGACGAGAAAGCCTTAAGGGAGGCTGTAGCA 777
|||||||||||||||||||||||||| ||||| |||||||| |||| ||||||||||||
Sbjct 725 ATTGATAGCTATGCTGGTGTAAAATCAAATGATGAGAAAGCGTTAATGGAGGCTGTAGCG 784
Query 778 GCTCAGCCAGTAAGTGTTGGCATTTGTGGAAGCGAGAGAGCGTTTCAGTTATATTCGAGG 837
||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 785 GCTCAGCCAGTTAGTGTTGGCATCTGTGGAAGCGAGAGAGCGTTTCAGCTATATTC---- 840
Query 838 GTGAGTGGAATATTCTCCGGCCCGTGTTCCACATCATTGGATCACGCTGTGCTCATAGTA 897
| |||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 841 -T-AGTGGAATATTCTCTGGCCCGTGTTCGACATCATTGGATCATGCTGTGCTCATAGTA 898
Query 898 GGATATGGTTCACAGAATGGTGTTGATTATTGGATTGTGAAAAACTCATGGGGAAAAAGT 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GGATATGGTTCACAGAATGGTGTTGATTATTGGATTGTGAAAAACTCATGGGGAAAAAGT 958
Query 958 TGGGGAATGGATGGGTTTATGCACATGCAGCGTAACACCGGGAATTCAGAAGG-GATATG 1016
|||||||||||||||||||||||||||||||||||||| | |||||||| || | | ||
Sbjct 959 TGGGGAATGGATGGGTTTATGCACATGCAGCGTAACACTGAAAATTCAGACGGCGTT-TG 1017
Query 1017 CGGAATCAATATGCTTGCTTCATATCCCATCAAGACACATCCAAACCCGCCTCCACCATC 1076
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1018 CGGAATCAACATGCTTGCTTCATATCCCATCAAGACACATCCAAACCCGCCTCCACCGTC 1077
Query 1077 CCCTCCTGGCCCCACAAAATGCAACCTTTTCACCTATTGTTCAGCTGGAGAGACTTGTTG 1136
|||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1078 CCCTCCTGGCCCTACAAAATGCAACCTTTTCACGTATTGTTCATCTGGAGAGACTTGTTG 1137
Query 1137 CTGTGCAAGA-AACTTGTTTGGTTTATGTTTTTCATGGAAATGCTGCGAGATAGAATCCG 1195
|||||||||| || |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1138 CTGTGCAAGAGAA-TTGTTTGGTTTATGCTTCTCATGGAAATGCTGCGAGATAGAATCCG 1196
Query 1196 CTGTGTGTTGCA-GCGATGGTCGTCATTGTTGTCCACATGATTACCCGGTTTGTGATACA 1254
|||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1197 CTGTGTGTTGCAAG-GATGGTCGTCATTGTTGTCCACATGATTACCCTGTTTGTGATACA 1255
Query 1255 ACCAGAAGTCTATGCCTTAAGAAAACCGGTAATTTCACGGCGATCAAGCCTTTCTGGAAG 1314
||||||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||||
Sbjct 1256 ACCAGAAGTCTCTGCCTTAAGAAAACTGGTAATTTCACTGCGATCAAGCCCTTCTGGAAG 1315
Query 1315 AAGGATTCTTCAAATA-AACTTGGCAGATTTGAGGAATGGGTTATGTGAGAGAATTTTTA 1373
||| |||||||||| | |||||||| |||||||||||||||||||||||||||| |||||
Sbjct 1316 AAGAATTCTTCAAA-ACAACTTGGCCGATTTGAGGAATGGGTTATGTGAGAGAAGTTTTA 1374
Query 1374 CGCATATGTTACAGAACTTTCAAACTCATCCATACAAAAACCTTGTAAATTCGATTATAT 1433
|||| ||||||||||| ||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1375 CGCACATGTTACAGAAAATTCAAACTCATCCATACAAAAACCTCGTAGATTCGATTAT-- 1432
Query 1434 ATCTGCGAGGGGGTTATTTGTAGCTGTTGTTGAGATATAAATATATGATATCATCACGGA 1493
|||||||||| ||||||||||||||| |||||||| | ||||| ||||||||||||||
Sbjct 1433 --CTGCGAGGGGATTATTTGTAGCTGTTATTGAGATAGATATATACGATATCATCACGGA 1490
Query 1494 TGTATTTTTAGTCTCTCATTTGGATGTATACAACTTCTGAGTCAATAAAGGACACTTGCA 1553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1491 TGTATTTTTAGTCTCTCATTTGGATGTATACAACTTCTGAGTCAATAAAGGACACTTGCA 1550
Query 1554 GGACAAACACAGTATTTGTATCTGCAAGGCACATAAAGTAATAAGAGTATCATCTATGTA 1613
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1551 GGACAAGCACAGTATTTGTATCTGCAAGACACATAAAGTAATAAGAGTATCATCTATGTA 1610
Query 1614 TATTGTAGAGAGATTAAGCTTCACTGTT 1641
|||| |||||||| ||||||||||||||
Sbjct 1611 TATTATAGAGAGACTAAGCTTCACTGTT 1638
> AT1G09860.1 | Symbols: ATPUP16, PUP16 | purine permease 16 |
chr1:3204016-3205309 REVERSE LENGTH=1294
Length=1294
Score = 228 bits (123), Expect = 2e-58
Identities = 131/135 (97%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 1507 TCTCATTTGGATGTATACAACTTCTGAGTCAATAAAGGACACTTGCAGGACAAACACAGT 1566
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1294 TCTCATTTGGATGTATACAACTTCTGAGTCAATAAAGGACACTTGCAGGACAAGCACAGT 1235
Query 1567 ATTTGTATCTGCAAGGCACATAAAGTAATAAGAGTATCATCTATGTATATTGTAGAGAGA 1626
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1234 ATTTGTATCTGCAAGACACATAAAGTAATAAGAGTATCATCTATGTATATTATAGAGAGA 1175
Query 1627 TTAAGCTTCACTGTT 1641
||||||||||||||
Sbjct 1174 CTAAGCTTCACTGTT 1160
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81073880175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5