BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471107 Length=1935 Score E Sequences producing significant alignments: (Bits) Value AT1G09960.1 | Symbols: SUT4, ATSUT4, SUC4, ATSUC4 | sucrose tra... 2926 0.0 > AT1G09960.1 | Symbols: SUT4, ATSUT4, SUC4, ATSUC4 | sucrose transporter 4 | chr1:3244213-3247200 FORWARD LENGTH=1974 Length=1974 Score = 2926 bits (1584), Expect = 0.0 Identities = 1824/1938 (94%), Gaps = 24/1938 (1%) Strand=Plus/Plus Query 8 CTACTCCCGATCAAGATCGCCGCCACAGAGCCACTCGCAACCGTCCACCACTACCTCGAC 67 ||||| |||||||||||||||| ||||||| ||||||||||||||||||| || |||||| Sbjct 50 CTACTTCCGATCAAGATCGCCGTCACAGAGTCACTCGCAACCGTCCACCAATAGCTCGAC 109 Query 68 CCTCTACTTCTTCATCTCGTCCCGTTGTAGCTCCT-C--GATCAAAAGTATCGAAGCGTG 124 ||||||||||||||||||||||||||||| ||||| | |||||||||| |||||||||| Sbjct 110 CCTCTACTTCTTCATCTCGTCCCGTTGTATCTCCTCCTAGATCAAAAGTTTCGAAGCGTG 169 Query 125 TACTTCTCCGTGTTGCTTCCGTCGCTTGTGGGATTCAATTCGGATGGGCGCTTCAGCTTT 184 | ||||||||||| ||||||||||| || |||||||||||||||||||| |||||||||| Sbjct 170 TGCTTCTCCGTGTAGCTTCCGTCGCATGCGGGATTCAATTCGGATGGGCTCTTCAGCTTT 229 Query 185 CGCTTCTCACACCTTACGTCCAAGAGCTAGGGATTCCACACGCTTGGGCTAGTGTGATTT 244 | || |||||||||||||| |||||||| ||||| ||||||||||||||||||||||||| Sbjct 230 CTCTCCTCACACCTTACGTTCAAGAGCTGGGGATCCCACACGCTTGGGCTAGTGTGATTT 289 Query 245 GGCTCTGCGGTCCTCTCTCTGGTTTGTTCGTGCAACCGCTCGTTGGACATAGTAGCGATA 304 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 290 GGCTTTGCGGTCCTCTCTCTGGTTTGTTCGTGCAACCGCTCGTTGGGCATAGTAGCGATA 349 Query 305 GGTGTACTAGCAAGTACGGTCGTCGGAGACCGTTTATTGTCGTTGGAGCTGTGGCGATTG 364 |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 350 GGTGTACTAGTAAGTACGGTCGTCGGAGACCGTTTATTGTCGCCGGAGCTGTGGCGATTT 409 Query 365 CTATCTCTGTTTTGGTTATTGGTCATGCGGCGGATATTGGATGGGCTTTTGGGGATAGAG 424 ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 410 CTATCTCTGTTATGGTTATTGGTCATGCGGCGGATATTGGATGGGCATTTGGGGATAGAG 469 Query 425 AAGGGAAGATTAAGCCGAGGGCGATTGTGGCTTTTGTTTTAGGGTTTTGGATTCTTGATC 484 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 470 AAGGGAAGATTAAGCCGAGGGCGATTGTTGCTTTTGTTTTAGGGTTTTGGATTCTTGATG 529 Query 485 TTGCTAATAACATGACTCAAGGTCCTTGTAGAGCTCTCCTCGCCGATCTTACTGAGAATG 544 |||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 530 TTGCTAATAATATGACTCAAGGTCCTTGTAGAGCTCTCCTTGCTGATCTTACTGAGAATG 589 Query 545 ATAATCGCAGAACCCGAGTGGCAAATGGCTATTTCTCTCTGTTTATGGCTATTGGCAATG 604 ||||||||||||||||||| ||||||||||| |||||||| ||||||||| ||||||||| Sbjct 590 ATAATCGCAGAACCCGAGTTGCAAATGGCTACTTCTCTCTCTTTATGGCTGTTGGCAATG 649 Query 605 TTCTTGGTTATGCTACTGGATCATTCAATGGTTGGTACAAGATCTTCACTTTTACGAAGA 664 ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 650 TTCTTGGCTATGCTACTGGATCATACAATGGTTGGTACAAGATCTTCACTTTTACGAAGA 709 Query 665 CAGTTGCATGTAATGTGGAATGTGCCAATCTCAAGTCTGCTTTCTACATAGATGTCGTCT 724 |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 710 CAGTTGCATGTAATGTGGAATGTGCCAATCTCAAGTCTGCCTTCTACATAGATGTTGTCT 769 Query 725 TTATTGCAATAACTACGATCCTAAGCGTCTCAGCGGCTCATGAGGTGCCTCTTGCTTCAT 784 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 770 TTATTGCAATAACTACGATCCTAAGCGTCTCAGCGGCTCATGAGGTGCCACTTGCTTCAT 829 Query 785 TGACTTCTGAAGCACATGGGCAAACCAGTGGAACAGACGAAGCTTTTCTTTCTGAAATAT 844 || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 830 TGGCTTCTGAAGCACATGGGCAAACCAGTGGAACAGACGAAGCTTTTCTTTCTGAGATAT 889 Query 845 TTGGAACTTTCAGATATTTTCCAGGGAATGTTTGGATAATCTTGCTTGTTACAGCATTGA 904 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 890 TTGGAACTTTCAGATATTTTCCAGGAAATGTTTGGATAATCTTGCTTGTTACAGCATTGA 949 Query 905 CATGGATTGGTTGGTTTCCATTTATTCTGTTTGATACTGACTGGATGGGTCGAGAGATCT 964 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 950 CATGGATTGGTTGGTTTCCATTTATTCTGTTTGATACTGATTGGATGGGTCGAGAGATCT 1009 Query 965 ATGGCGGTGAACCGAACATAGGTACTTCTTATAGTGCCGGAGTTAGTATGGGCGCTCTTG 1024 |||||||||||||||||||||| ||||| |||||||| || || |||||||| || |||| Sbjct 1010 ATGGCGGTGAACCGAACATAGGGACTTCATATAGTGCTGGGGTCAGTATGGGTGCACTTG 1069 Query 1025 GTTTGATGTTGAATTCTGTTTTTCTTGGAATCACTTCGGTGCTCATGGAGAAGCTTTGCA 1084 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 1070 GTTTGATGTTGAATTCTGTTTTTCTTGGAATCACTTCTGTGCTCATGGAGAAACTTTGCA 1129 Query 1085 GAAAGTGGGGGGCTGGTTTTGTTTGGGGAATATCAAATATCTTAATGGCTATTTGCTTTC 1144 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1130 GAAAGTGGGGGGCTGGTTTTGTTTGGGGAATATCAAATATCTTAATGGCTATTTGCTTTC 1189 Query 1145 TTGGAATGATTATCACCTCATTTGTTGCGTCTCATCTTGGCTACATTGGCCATGAACAAC 1204 |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1190 TTGGAATGATAATCACCTCATTTGTTGCGTCTCACCTTGGCTACATTGGCCATGAACAAC 1249 Query 1205 CTCCTGCCAGCATCGTATTTGCTGCTGTGTTAATCTTTACAATTCTGGGCATTCCATTGG 1264 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1250 CTCCTGCCAGCATCGTGTTTGCTGCTGTGTTAATCTTTACAATTCTGGGCATTCCATTGG 1309 Query 1265 CAATAACTTACAGTGTCCCATATGCGTTGATTTCCATACGTATAGAATCTTTGGGCCTAG 1324 | ||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||| Sbjct 1310 CGATAACTTACAGCGTCCCATATGCGTTGATTTCCATACGTATTGAATCCCTGGGCTTAG 1369 Query 1325 GTCAAGGCTTATCTTTGGGTGTGCTGAATTTGGCGATAGTCATCCCACAGGTAATTGTGT 1384 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1370 GTCAAGGCTTATCTTTGGGTGTGCTAAATTTGGCGATAGTCATCCCACAGGTAATTGTGT 1429 Query 1385 CTGTTGGCAGTGGCCCATGGGATCAACTGTTTGGAGGTGGGAATTCACCGGCGCTTGCAG 1444 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1430 CTGTTGGCAGTGGCCCATGGGATCAACTGTTTGGAGGTGGGAATTCACCGGCACTTGCAG 1489 Query 1445 TAGGAGCAGCTGCAGGTTTCATTGGTGGAATTGTAGCCATCTTGGCTCTTCCCCGAACAA 1504 ||||||||||| |||| |||||||| ||||||||||| |||||||||||||| || |||| Sbjct 1490 TAGGAGCAGCTACAGGCTTCATTGGCGGAATTGTAGCTATCTTGGCTCTTCCACGGACAA 1549 Query 1505 GGATTCAGAAGCCCATCCCTCTCCCATGACATCCTCTCTTTTGTTATAAGGTAAGATGAG 1564 ||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||| Sbjct 1550 GGATTCAGAAGCCCATCCCTCTCCCATGAGATTCTCTCTTTTGTTATA---TAAGATGAG 1606 Query 1565 TTTCAAGCGAGGAACGCATAAGGGGAGTACT-GGAAAATGGCAAGGAGATGGAACACTTA 1623 | |||||||||||||||||||||||||| || ||||| |||||||||||||||||||||| Sbjct 1607 TGTCAAGCGAGGAACGCATAAGGGGAGTGCTTGGAAA-TGGCAAGGAGATGGAACACTTA 1665 Query 1624 ATGTGATCCTTGTCGAA--TTCATGCAATGGCTTCTCGTGTGACTTAACTTATTTGCAGC 1681 ||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||| Sbjct 1666 ATGTGATCCTTGTCGAAAATTCGTGCAATGGCTTCTCGTGTGACT-AACTTATTTGCAGC 1724 Query 1682 TACTAGGACTTAATCTCCTCTACTTTGGGGACTATGATCCTTGTATCCACGAGG-AGCCA 1740 ||||||||||||||| |||||||||||||||||||||||||||||| ||||||| | ||| Sbjct 1725 TACTAGGACTTAATCCCCTCTACTTTGGGGACTATGATCCTTGTATACACGAGGCA-CCA 1783 Query 1741 TATAACCAATGAAA-TAAAACATCATTCAGTTTGTGAGGTATATGCAT-TCTCCTTTGTT 1798 || ||||||||||| ||| ||||||||||||||||||||||||||||| |||||||| || Sbjct 1784 TAGAACCAATGAAAATAATACATCATTCAGTTTGTGAGGTATATGCATCTCTCCTTTATT 1843 Query 1799 GGAAGTCCCAATTCGGGATCTTCTCtgtttttgttgttgttgttgtAACTTAATGTGAAA 1858 |||||| ||| ||||||||||||||||||||| ||||||||||||||| ||||||| ||| Sbjct 1844 GGAAGTTCCAGTTCGGGATCTTCTCTGTTTTTTTTGTTGTTGTTGTAAATTAATGTAAAA 1903 Query 1859 ACCTGTGTGCAATGGAGAGTTTGTAATGACCCCTGAATTCCAGGGTTCTGTAACTGTT-A 1917 |||||||| ||| ||| |||||||| | ||||||| | ||||||||||||| | Sbjct 1904 ACCTGTGTACAACAGAGTGTTTGTAAGGGCCCCTGA------G--TTCTGTAACTGTTTA 1955 Query 1918 TAAAGTTCATTTTCTTTA 1935 |||||||||||||||||| Sbjct 1956 TAAAGTTCATTTTCTTTA 1973 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 95832840405 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5