BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471143 Length=2319 Score E Sequences producing significant alignments: (Bits) Value AT1G10320.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fam... 2983 0.0 > AT1G10320.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family protein | chr1:3384164-3388373 REVERSE LENGTH=2274 Length=2274 Score = 2983 bits (1615), Expect = 0.0 Identities = 1983/2155 (92%), Gaps = 48/2155 (2%) Strand=Plus/Plus Query 1 ATggagc-agaagaacggaaaggaagaaggagagcgacacggagaagcgttggaagagaa 59 ||||||| || | |||| ||||||||||| ||||||||||| ||||||| || |||||| Sbjct 1 ATGGAGCAAGCA-AACGAAAAGGAAGAAGAAGAGCGACACGAAGAAGCGGCGGGAGAGAA 59 Query 60 ggaaagTTTTGAAGAGAGTAAAGAGAAATTGGCGGAGATGAGCCGTAAGGAGAAGCGAAA 119 |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 60 GGAAAGTTTTGAAGAGAGTAAAGAGAAAGCGGCGGAGATGAGTCGTAAGGAGAAGCGAAA 119 Query 120 AGTGTTGAAGAAATTgaagaggaagcaggtgaggaaggagatagcggagaaggagaggga 179 || | |||||||||||||||||||||| |||||||||||||| |||| |||||||||||| Sbjct 120 AGCGATGAAGAAATTGAAGAGGAAGCAAGTGAGGAAGGAGATTGCGGCGAAGGAGAGGGA 179 Query 180 ggaggcggaggCTAAGTTGAACGATCCGGCGGAACaggagaggttgaaggcgattgagga 239 ||| ||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 180 GGAAGCGAAGGCTAAGTTAAACGATCCGGCGGAACAGGAGAGATTGAAGGCGATTGAGGA 239 Query 240 agaggaggctcggaggagagagaaggagttgaaggagtttgaggagagtgagagagcttg 299 |||||| || ||||||||||| |||||||||||||| |||||||||||||| |||||||| Sbjct 240 AGAGGATGCGCGGAGGAGAGAAAAGGAGTTGAAGGACTTTGAGGAGAGTGAAAGAGCTTG 299 Query 300 gcgagaggctatggagattaagaggaagaaagaggatgaagaagaagcgaagcgggaaga 359 | |||| ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| Sbjct 300 GAGAGAAGCTATGGAGATCAAGAGGAAGAAAGAGGAGGAAGAGGAAGCGAAGCGGGAAGA 359 Query 360 ggaagagagacgttggaaggatctagaagaattgagaaagCTTGAGGCTAGTGGGAATGA 419 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 360 GGAAGAGAGGCGTTGGAAGGATCTAGAAGAGTTGAGAAAGCTTGAGGCTAGTGGGAATGA 419 Query 420 TGAATGTGGCGAGGATGAGGATGGTGAATATGAATATATCGAAGAAGGGCCTCCAGAAAT 479 ||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 420 TGAGTGTGGTGAGGATGAGGATGGTGAATATGAATATATCGAAGAAGGACCTCCAGAAAT 479 Query 480 TATATTCCAGGGAAATGAGATCATCCTCAAAAAGAACAAAGTGAGAGTTCCAAAGAAATC 539 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 480 TATATTCCAGGGAAATGAGATCATTCTCAAAAAGAACAAAGTGAGAGTTCCAAAGAAATC 539 Query 540 GGTTGTTCAGGTCGATGGAAACGAGAGTTCCAATGTGGAGTTTGTTTTGCAGATTTCTGA 599 ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| Sbjct 540 GGTTGTTCAGGTCGATGGACACGAGAGTTCCAATGCGGAGTTTGTTTTGCAGATTTCTGA 599 Query 600 CAGGCCTACATCAAATCCTCTACCTCCGGGAAGTGAAGCCTGTGCCAATTATCAGAATGT 659 ||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 600 CAGGCCTACTTCAAATCCTCTACCTCCGGGAAGTGAAGCTTCAGCCAATTATCAGAATGT 659 Query 660 TAGTTCTGCCCAACAGATTTTGGAGAGTGTTGCACAAGAAGTACCCAACTTTGGGACTGA 719 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 660 TAGTTCTGCGCAACAGATATTGGAGAGTGTTGCACAAGAAGTACCCAACTTTGGAACTGA 719 Query 720 GCAGGATAAAGCTCATTGTCCTTTCCATTTGAAAACTGGAGCTTGTCGGTTTGGCCCGCG 779 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 720 GCAGGATAAAGCTCATTGTCCTTTCCATTTGAAAACTGGAGCTTGTCGGTTTGGCCAGCG 779 Query 780 TTGTAGCAGAGTTCATTTCTACCCCAATAAATCGTGCACTCTACTTATGAAGAACATGTA 839 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 TTGCAGCAGAGTTCATTTCTACCCCAATAAATCGTGCACTCTACTTATGAAGAACATGTA 839 Query 840 TAATGGTCCTGGTATTGCTTGGGAACAGGATGAGGGGCTTGAGTATACAGATGAGGAGGC 899 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 TAATGGTCCTGGTATTACTTGGGAACAGGATGAGGGGCTTGAGTATACAGATGAGGAGGC 899 Query 900 TGAACAT-TGTTATGAAGAATTTTATGAAGATGTTCATACAGAGTTCCTAAAGTATGGAG 958 ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 TGAAC-TCTGTTATGAAGAATTTTATGAAGATGTTCATACAGAGTTCCTAAAGTATGGAG 958 Query 959 AACTTATTAATTTCAAGGTGTGTAGAAATGGCTCATTCCACTTGAAGGGCAATGTATATG 1018 ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 959 AACTTGTTAATTTCAAGGTGTGTAGAAATGGCTCATTCCATTTGAAGGGCAATGTATATG 1018 Query 1019 TGCACTACAGATCATTAGAATCAGCTATTCTTGCTTACCAGTCCATTAATGGTCGATACT 1078 | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1019 TCCACTACAGATCACTAGAATCAGCTATTCTTGCTTACCAGTCCATTAATGGTCGATACT 1078 Query 1079 TTGCTGGTAAACAGGTGAATTGCGAGTTTGTCAACATCTCAAGATGGAAAGTTGCCATAT 1138 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1079 TTGCGGGTAAACAGGTGAATTGCGAGTTTGTCAACATCTCAAGATGGAAAGTTGCCATAT 1138 Query 1139 GTGGGGAGTACATGAAGTCCAGGCTTAAAACTTGTTCTCGTGGATCTGCTTGCAATTTTA 1198 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1139 GTGGGGAGTACATGAAGTCCAGGCTTAAAACTTGTTCTCGTGGATCTGCCTGCAATTTTA 1198 Query 1199 TACATTGTTTCCGAAATCCTGGTGGAGACTACGAATGGGCTGACCAAGACAGACCACCTC 1258 | ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 1199 TCCATTGTTTCCGAAATCCTGGTGGAGACTATGAATGGGCTGACCATGACAGACCACCTC 1258 Query 1259 CAAGATTCTGGATTCACAAAATGACCTCTTTATTTGGTTATTCTGATGAAAAGTACATGG 1318 ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| Sbjct 1259 CAAGATTCTGGATTCACAAAATGACCTCTTTATTTGGTTATTCAGATGAAAAGCACATGG 1318 Query 1319 AACATGAATCTTCAGGGTCGTTAAATGATTCAAGATCAGATCTATCAACAGATTTACTCA 1378 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| || || Sbjct 1319 AACATGAATCTTCAGGGTCGTTAAATGATTCAATATCAGATCTATCAACAGATTCACACA 1378 Query 1379 GGCAACCTTCAAGAAGATCTAGATCGAGGAACCATGATCATGCGAATGTTGGATCTACGC 1438 ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 1379 GGCAACCTTCAAGAAGATCTAGATCGAGGGACCATGATCATGCTAATGTTGGATCTACGC 1438 Query 1439 CTTCTTATAGGAGCCGTAAATATCATGGTGATACTCGGGACAGCAGTCGTGAAGACGAA- 1497 |||||||||||||||||||||||||||||||||||| |||||||| |||||||||| || Sbjct 1439 CTTCTTATAGGAGCCGTAAATATCATGGTGATACTCAGGACAGCACTCGTGAAGAC-AAG 1497 Query 1498 CTTAGCAGGCATGCCGAGAACTGTCATGATGGAGATGACAGTCCTAGCAGAGACGGTAGT 1557 ||| |||||||||||||||||||||||||||| ||||||||||| |||||||| |||||| Sbjct 1498 CTTCGCAGGCATGCCGAGAACTGTCATGATGGTGATGACAGTCCGAGCAGAGATGGTAGT 1557 Query 1558 TTAGAGAGGGAGATGTGTAAAGAGCGACGGTATGCTAAGGACACATTGCATCGTGATAGC 1617 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1558 TTAGAGAGGGAGATGTATAAAGAGCGACGGTATGCTAAGGACACATTGCATCGTGATAGC 1617 Query 1618 AGATGGTCTGAACACTCTTCTGGACATCGGGTGATAAGGAAAAGAATCCATGG----T-T 1672 |||||||||||||||||| |||||||||||||| |||||| ||||||||||| | | Sbjct 1618 AGATGGTCTGAACACTCTCCTGGACATCGGGTGGGAAGGAAGAGAATCCATGGGAGGTAT 1677 Query 1673 -CTGATGATGATTCTCCTGATGG---T-A----GG-AG-AGAG--ACAGGTCACAAACAA 1719 |||||||||||||| ||||||| | | || || |||| || |||||||||| | Sbjct 1678 TCTGATGATGATTCTGCTGATGGAGATGACTATGGTAGGAGAGGGACGGGTCACAAACGA 1737 Query 1720 AAATCCAGAAGACGGACAGATTCAAAAGTAGAAGAACAGACAGACGATGAAAAGGACAGG 1779 ||| |||||||| ||||||||||| |||| ||||||||| ||| ||||||||||||| Sbjct 1738 AAACCCAGAAGAGGGACAGATTCAGGAGTACAAGAACAGATGGACAATGAAAAGGACAGA 1797 Query 1780 AAAACCCACAGGAGTTCAAGAAAATACAGCAGGGAAAGGTCATCAGCTGATCAAGAGGAG 1839 |||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 1798 AAAACCCACAGGAGTTCAAGAAAACACAGCAGGGAAGGGTCATCAGCTGATAAAGAGGAG 1857 Query 1840 AGTCATGAACATGATAGGGTTTGTACAGTTTCTGATAAGTCGCAGAGAGAAGGATCAAAA 1899 |||||||||||||||||||| |||||||||||| |||||||| |||||| |||| || Sbjct 1858 GGTCATGAACATGATAGGGTTCATACAGTTTCTGACAAGTCGCATAGAGAAAGATCGAAG 1917 Query 1900 CATGGGCATGAAAGAAGCAGCTCAAGATATTCGCACGCTGAAGATTCAACTGAAAGTAGA 1959 ||| | ||||||||||| |||||||||||||| |||| |||||||||||||| |||||| Sbjct 1918 CATCGACATGAAAGAAGTAGCTCAAGATATTCACACGAGGAAGATTCAACTGAGAGTAGA 1977 Query 1960 CATCATCCGCATAAAGGATCAGACCTTCGAGTTAAAGGAGAAAATGACAGGAAGAGAAGT 2019 ||||||| ||| |||| ||||||| | | | | | || | ||| | Sbjct 1978 CATCATCAGCACAAAGAATCAGAC-----A---A--G-A-A----GA--G-AAG-----T 2013 Query 2020 GTAGAGACTAGTCCCAAAGAACATCAGTCAGATAAAGAAAGGGACAAAAGTAAACAGAGA 2079 ||||||||||||||| || | |||||||||||||||| ||||||| ||| ||||||||| Sbjct 2014 GTAGAGACTAGTCCCGTAGGATATCAGTCAGATAAAGATAGGGACAGAAGCAAACAGAGA 2073 Query 2080 GATAGATACAAGACCCAGGATCCTGACTGTGACCGAAGCAGGAAAGGAAAACGAC 2134 | |||||||||| | | ||||| || | ||| | |||||||||||||||||||| Sbjct 2074 CAGAGATACAAGAGCGATGATCCAGAGTCTGATCAAAGCAGGAAAGGAAAACGAC 2128 Score = 195 bits (105), Expect = 2e-48 Identities = 128/139 (92%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 2182 GAGAGTTCAGATAGAGAAACACACAAAGAGAGACCTCATCGCCATAGAAAAAGAAGACGG 2241 |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 2137 GAGAATTCAGATAGAGAAACACACAAAGAGAGACGTCATCGCCATAGAAAAAGAAGACGG 2196 Query 2242 TCACAAAACTCAGACGACCAGACTCCTGA-TTTTGCTGAGGAAGTGGAAGAAGAGATTGA 2300 ||||||||||||||||||||| |||| | | | ||||||||||||||||||||||| Sbjct 2197 ACACAAAACTCAGACGACCAGAATCCTAAGGAAT-CAGAGGAAGTGGAAGAAGAGATTGA 2255 Query 2301 GCGTTGGAGACCAGTGTGA 2319 ||||||||||||||||||| Sbjct 2256 GCGTTGGAGACCAGTGTGA 2274 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 115109849685 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5