BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471155
Length=1958
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10410.1 | Symbols: | Protein of unknown function (DUF1336)... 2987 0.0
> AT1G10410.1 | Symbols: | Protein of unknown function (DUF1336)
| chr1:3416680-3419639 REVERSE LENGTH=1995
Length=1995
Score = 2987 bits (1617), Expect = 0.0
Identities = 1872/1988 (94%), Gaps = 45/1988 (2%)
Strand=Plus/Plus
Query 1 TTTTT-TCTCATTTTATTGACTTTCCGAATCTCCAAAAATCTAA-CCAAATaaa-aaa-a 56
||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| ||| |
Sbjct 21 TTTTTCTCTCATTTTATTGACTTTCCGAATCTCCAAAAATCTAACCCAAA-AAATAAACA 79
Query 57 a-a---TATTTTTTCTCCGCAAAGGAAAAATCTTTTCTTCACCAAATAATTTGTCTCTTT 112
| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 80 ATAGTTTTTTTTTTCTCCGCAAAGGAAAAATCTTTTCTTCACCAAATAATTTGTCTCTTT 139
Query 113 CGCAAATCTCAGCTTTCTCTCGAAATGCCCTTTCAATGATAAAATTGTGGGCTTTATTCA 172
|||||||||||||| ||||||||| || |||||||| |||||| ||||||||||||||||
Sbjct 140 CGCAAATCTCAGCTCTCTCTCGAAGTG-CCTTTCAACGATAAATTTGTGGGCTTTATTCA 198
Query 173 TTTATAGTGTTCATTCGATGGTGACAGATTCTATTACCAGAAATTGATCAAagagagaga 232
||||||||||| || |||| |||||||||||||||||||||||||||| | | |||
Sbjct 199 TTTATAGTGTTGTTTTGATGATGACAGATTCTATTACCAGAAATTGATC----A-A-AGA 252
Query 233 gagagaAACGTTG--CTCTCTTGAttttttttctg--ggttttttt-t-t-A-TAATTTA 284
|| | |||||||| |||||||||||| ||||||| ||||||| | | | ||||||
Sbjct 253 GA-A-AAACGTTGCTCTCTCTTGATTTCTTTTCTGTTTTTTTTTTTATATAATTAATTTG 310
Query 285 TTCCGGTG-ATCATCG-C--CTTATGGAAGATTGAAGCTAATTTCTAATC--TA-A-AGA 336
|||||||| || |||| | |||||||||| ||| ||||||||||||||| || | |||
Sbjct 311 TTCCGGTGAATGATCGTCGTCTTATGGAAGGTTGTAGCTAATTTCTAATCTATAGAGAGA 370
Query 337 GAGAGATGGGAGGTTGCGTGTCGACGCCTAAGAGCTGTGTTGGAGCAAAACTGAGGTCAA 396
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 371 GAGAGATGGGAGGTTGCGTGTCGACGCCGAAGAGCTGTGTTGGAGCAAAACTGAGGTCAA 430
Query 397 GTAAACGAAGGAAGAGTCGTAGACGACGAAAAATTCAAAGGAAGAGA---GCCGTCTCTT 453
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 431 GTAAACGAAGGAAGAGTCGTAGACGACGAAAAATTCAAAGGAAGAGAGCCGCCGTCTCTT 490
Query 454 CTCGTCTCTCTGACGGATCTTTCGACAATCTCGATCATCATCCTCATCGTAACTTCTCCA 513
|||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
Sbjct 491 CTCGTCTCTCTGACGGATCTTTCGACAATCTCGATCATCA---TCATCGCAACTTCTCTA 547
Query 514 ATCCCAGTTCTCGAGCAACTGGCGACGACGCATGGTTTGAGTCCAATGTCGCATTTGAAA 573
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 548 ATCCCAGTTCTCGAGCAACTGGCGAAGACGCATGGTTTGAGTCCAATGTCGCATTTGAAA 607
Query 574 CAGACTGTGATGATGATTTTCACAGTGTCCATGAAGATACATTGTCTATAAACGGATCTG 633
||||||||||||||||||| |||||||| ||||||||| |||||||| ||||||||||||
Sbjct 608 CAGACTGTGATGATGATTTCCACAGTGTTCATGAAGATGCATTGTCTTTAAACGGATCTG 667
Query 634 AGCGTGTATCACTCTCGAGTACAACAACCACATCATCAACCCGAGACACTGATTCAAATG 693
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 668 AGCGTGTATCACTCTCGAGTACGACAACCACATCATCAACACGAGACACTGATTCAAATG 727
Query 694 AAGTGATGTCACAATCGAAATCAGACGGTGACTTAAACGACACAAAGCAGCCTGATTTAG 753
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 728 AAGTGATGTCTCAATCGAAATCAGACGGTGACTTAAACGACACAAACCAGCCTGATTT-G 786
Query 754 -TTGATTCGTCTGCAGATGAAGGACTTTTGGAAAACTGCAGGATCTTACCGAGCAATTGT 812
||||||| |||||||||||||| || |||||||||||||||||||||||||| ||||||
Sbjct 787 ATTGATTCATCTGCAGATGAAGGTCTCTTGGAAAACTGCAGGATCTTACCGAGTAATTGT 846
Query 813 TTGCCTTGTCTGAATACAACAACTGTTCCTTCTATTGACAAGAGAAGGTCTCTTAGCTCT 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 TTGCCTTGTCTGAATACAACAACTGTTCCTTCTATTGACAAGAGAAGGTCTCTTAGCTCT 906
Query 873 AGCCCTCCCAGTTCGAGaaaaaaaaT-GTCTCTTAAACTTTCTTATAAATGGAGAGAAGG 931
|||||||||||||| || ||||||| ||||||| ||||||||||||||||||||||||
Sbjct 907 AGCCCTCCCAGTTCCAG-GAAAAAATCATCTCTTAGACTTTCTTATAAATGGAGAGAAGG 965
Query 932 TCATGCTTCAGGAGCATTGTTTTTGTCTAAAATGCAGTTGAAGAGACCGATAGCGGGTTC 991
||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 966 TCATGCTTCAGGAGCCTTGTTTTTGTCGAAAATGCAGCTGAAGAGACCGATAGCGGGTTC 1025
Query 992 TCAGGTTCCTTTCTGTCCAATTGATAAGAAAATGCTCGATTGTTGGTCAACCATTGATCC 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 TCAGGTTCCTTTCTGTCCAATTGATAAGAAAATGCTCGATTGTTGGTCAACCATTGATCC 1085
Query 1052 AAATAGTTTTAGGGTTCGTGGCAAAACATATTTCAGAGAAAAGAAGAAAGAGTTTGCACC 1111
|||||||||| |||||||||||||||||||| |||| || ||||||||||||||||||||
Sbjct 1086 AAATAGTTTTCGGGTTCGTGGCAAAACATATCTCAGGGAGAAGAAGAAAGAGTTTGCACC 1145
Query 1112 TAGCCATGCTGCGTATAATCCTTTTGGTGTCGATGTTTTCTTATCGGAACACAAAATAAA 1171
||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1146 TAGCCATGCTGCGTACAATCCTTTTGGTGTCGATGTTTTCCTATCGGAACACAAAATACA 1205
Query 1172 CCATGTTGCACAATATGTCAAACTTCCCGTTACTACCACATCCACAAAACTCCCATCTAT 1231
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1206 CCATGTTGCACAATATGTCAAACTTCCTGTTACTACCACATCCACAAAACTCCCATCTAT 1265
Query 1232 CCTTGTTGTAAATGTTCAGATTCCGTTGTATCCAACTGCAATCTTTCAAGGTGACTCTGA 1291
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1266 CCTTGTTGTAAATGTTCAGATTCCGTTATATCCAACTGCAATCTTTCAAGGTGAATCTGA 1325
Query 1292 TGGAGAAGGAATGAATATTGTATTATACTTCAAACTCTCGGATAATTATTCAAAGGAACT 1351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 TGGAGAAGGAATGAATATTGTATTATACTTCAAACTCTCGGATAATTATTCAAAGGAACT 1385
Query 1352 TCCGCTCCATTTTCAAGAAAGCATTCGGAGATTAATAGATGATGAGGTTGAGAAAGTTAA 1411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 TCCGCTCCATTTTCAAGAAAGCATTCGGAGATTAATAGATGATGAGGTTGAGAAAGTTAA 1445
Query 1412 AGGCTTCCCTATGGATACAACCGCACCTTTTAGAGAGCGGCTCAAGATATTGGGACGTGT 1471
|||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1446 AGGCTTCCCTTTGGATACAACGGCACCTTTTAGAGAGCGGCTTAAGATATTGGGACGTGT 1505
Query 1472 TGCAAACGTAGATGATCTCCATTTGAGTGGTCCGGAGAAAAAACTGATGCAGGCTTATAA 1531
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1506 TGCAAACGTGGATGATCTCCATTTGAGTGGTCCGGAGAAAAAACTGATGCAGGCTTATAA 1565
Query 1532 CGAGAAACCTGTTCTTTCACGTCCGCAGCACGAATTCTACTTGGGCGACAATTACTTTGA 1591
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1566 CGAGAAACCTGTACTTTCACGTCCGCAGCACGAATTCTACTTGGGTGACAATTACTTTGA 1625
Query 1592 GGTTGATATAGATATGCATAGATTCGGTTATATATCCCGGAAAGGGTTTGAAACATTCAT 1651
| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1626 GATTGATATCGATATGCATAGATTCGGTTATATATCGCGGAAAGGGTTTGAAACATTCAT 1685
Query 1652 AGACAGACTCAAGATCTGTGTTCTTGATGTTGGCCTCACAATTCAGGGGAACAAACCGGA 1711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1686 AGACAGACTCAAGATCTGTGTTCTTGATGTTGGCCTCACAATTCAGGGGAACAAACCAGA 1745
Query 1712 GGAGCTACCAGAGCAGATTCTATGTTGCGTCAGGCTAAATGGGATTGATTTCATGAACTA 1771
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1746 GGAGCTACCGGAGCAGATTCTGTGTTGCGTCAGGCTAAATGGGATTGATTTCATGAACTA 1805
Query 1772 TCATCAATTAACTCAAGAACTCCTATGACTAACAGCATTATTTTCTCCTCTGTTTTTCCT 1831
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1806 TCATCAATTAACTCAAGAACTCCTATGACTAACAACATTGTTTTCTCCTCTGTTTTTCCT 1865
Query 1832 TCTGAAAAGAAACACAAAATCTAAAAGAGCATCCCTTTAGAAACCCAAGAACACAAA-CA 1890
| ||||||||||||||||||| ||||||||||||| |||||| |||||||||||||| ||
Sbjct 1866 TGTGAAAAGAAACACAAAATCCAAAAGAGCATCCCGTTAGAACCCCAAGAACACAAAACA 1925
Query 1891 AAGGGTGATGATTTTCAAGTGAATATATGAAAATTTCGAATCTTTAATCAAAAGTATTAT 1950
|||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1926 AAGGGTGATGATTTACAAGTGAATATATGAAAATTTCGAATCTTTAATCCACAGTATTAT 1985
Query 1951 CTTCTACT 1958
||| ||||
Sbjct 1986 CTTATACT 1993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96987452940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5