BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471187
Length=1601
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10650.1 | Symbols: | SBP (S-ribonuclease binding protein) ... 1482 0.0
> AT1G10650.1 | Symbols: | SBP (S-ribonuclease binding protein)
family protein | chr1:3524018-3526346 REVERSE LENGTH=1519
Length=1519
Score = 1482 bits (802), Expect = 0.0
Identities = 954/1024 (93%), Gaps = 24/1024 (2%)
Strand=Plus/Plus
Query 590 TGGGAGGTGGATGCACTGTTGATCCAGTAAACTACTTTGCTAACGATAATCTCGTTCCAA 649
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 505 TGGGAGGTGGATGCACTGTTGATCCAGTAAACTACTTTGCTAACGATAACCTCGTTCCAA 564
Query 650 TGATTCGGCCTAACAAAAGAGGAAGGGAAGCCGAAAGCATTAGTAACAACATCCAAAGAC 709
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 TGATCCGCCCTAACAAAAGAGGAAGGGAAGCCGAAAGCATTAGTAACAACATCCAAAGAC 624
Query 710 -A-A-CAGAAGCTTCAAATGTCTTTGAACTACAATCATAACAACATTAGTGTTCGAGAAG 766
| | |||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||
Sbjct 625 AACAGCAGAAGCTTCAAATGTCTTTGAACTATAATTATAACAACACTAGTGTTCGAGAAG 684
Query 767 AAGTGCGTAAAGAGAATCTAGTATCTACTGGTCTTAGACTATCTTATGATGACGATGAAC 826
|||||| ||||||||||||||| || |||||||| |||||||||||||| ||||||||||
Sbjct 685 AAGTGCCTAAAGAGAATCTAGTCTCAACTGGTCTGAGACTATCTTATGACGACGATGAAC 744
Query 827 GCAACTCTTCAGTGACTTCTGCTAGTGGTGGCATTGTAGCTGCTTCTCCAATCTTTCAGT 886
||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 745 ACAATTCTTCAGTGACTTCTGCTAGTGGTAGCATTTTAGCTGCTTCTCCAATCTTTCAGT 804
Query 887 CACTCGATGATAGTCTTCGGATTGACCTCCATAGACAAAAAGATGAGCTTGACCAGTTCA 946
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 805 CACTCGATGATAGTCTTCGGATTGATCTCCATAGACAAAAAGATGAGTTTGACCAGTTCA 864
Query 947 TCAAGATCCAGGCAGCTCAAATGGCGAAAGGTGTGAGAGATATGAAACAGAGACATATCG 1006
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 865 TCAAGATCCAGGCAGCTCAAATGGCGAAAGGTGTGAGGGATATGAAACAGAGACACATCG 924
Query 1007 CGTCTTTTCTCACTACATTAGAGAAAGGAGTGAGCAAGAAGCTTCAAGAGAAAGATCACG 1066
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 CGTCTTTTCTCACAACATTAGAGAAAGGAGTGAGCAAGAAGCTTCAAGAGAAAGATCACG 984
Query 1067 AGATCAATGACATGAACAAGAAGAATAAAGAGCTCGTGGAGCGGATAAAGCAAGTGGCAA 1126
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 985 AGATCAATGATATGAACAAGAAGAATAAAGAGCTTGTGGAGCGGATAAAGCAAGTGGCAA 1044
Query 1127 CGGAAGCTCAGAATTGGCACTACAGAGCAAAGTACAATGAGTCTGTGGTTAATGTCTTAA 1186
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 TGGAAGCTCAGAATTGGCACTACAGAGCAAAGTACAATGAGTCTGTGGTTAATGTCTTAA 1104
Query 1187 AGGCAAATCTCCAACAAGCAATGTCACACAACAACAATGTGATTGGTGCGGCAGATCAAG 1246
|||||||||||||||||||||||||||||||||||| |||||| | ||| ||||||||||
Sbjct 1105 AGGCAAATCTCCAACAAGCAATGTCACACAACAACAGTGTGATAGCTGCTGCAGATCAAG 1164
Query 1247 GCAAAGAAGGGTTTGGAGACAGTGAAATAGATGATGCAGCTTCATCATACATTGATCCAA 1306
|||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1165 GCAAAGAAGGTTTTGGAGACAGCGAAATAGATGATGCAGCTTCATCATACATCGATCCAA 1224
Query 1307 ACAACAA---CAAGA------TGGGGATTCATCAGAGGATGAGATGCAAAATGTGCAACG 1357
||||||| ||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1225 ACAACAATAACAACAACAACATGGGGATTCATCAGAGGATGAGATGCAAAATGTGCAACG 1284
Query 1358 GGAAGGAAGTATCGGTGTTGCTCGTGCCATGTCGGCACTTGAGTTTGTGTAAAGAATGTG 1417
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1285 TCAAGGAAGTATCGGTGTTGATAGTGCCATGTCGGCACTTGAGTTTGTGTAAAGAATGTG 1344
Query 1418 ATGTATTCACTAAGATTTGTCCTGTATGCAAGTCTTTGAAAAGTTCTAGCGTTCAGGTCT 1477
||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||
Sbjct 1345 ATGTATTCACTAAGATTTGTCCTGTATGCAAGTCTTTGAAAAGTTCTTGCGTCCAAGTCT 1404
Query 1478 TCTTTTCTTGAATCTGTGACCAAAACTGGAACAAAAGAAAAGAAGGAAAAATAGAATCCA 1537
||||||||||| | |||||||||| ||||||| ||| | | ||||| ||||||||
Sbjct 1405 TCTTTTCTTGATT-TGTGACCAAA--TGGAACA---GAA--G--G-AAAAAGAGAATCCA 1453
Query 1538 TTATATAAGTCTTTCAAACTCTTTTCAAAAGATATATTTTACTATATAAAATTATTTGTA 1597
|||||||||||||||| |||||||| |||| | ||||||| |||||||| |||||||||
Sbjct 1454 TTATATAAGTCTTTCATACTCTTTTTAAAAAA-ATATTTTGTTATATAAATTTATTTGTA 1512
Query 1598 TCGG 1601
||||
Sbjct 1513 TCGG 1516
Score = 606 bits (328), Expect = 2e-172
Identities = 456/512 (89%), Gaps = 31/512 (6%)
Strand=Plus/Plus
Query 1 TCCCCCACTTCTTCCACCACTGTCCCGCTCCATCGCACCCGCTTTGCTTACCAcatccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCCCCCACTTCTTCCACCACTGTCCCGCTCCATCGCACCCGCTTTGCTTACCACATCCAT 60
Query 61 ccatcattcattcatttcattttctttctctcttcttcttccgtttcttttgcctctttc 120
| || | |||||||||| ||| |||||| ||||||||||||||||||||||||||||||
Sbjct 61 C-AT--T-CATTCATTTCCTTT-CTTTCTTTCTTCTTCTTCCGTTTCTTTTGCCTCTTTC 115
Query 121 ttttgtcttcttccttcaatttttt-gtggctttaaatttattgggttttgttcttcttc 179
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 116 TTTTGTCTTCTTCCTTCTATTTTTTTGTGGCTTTAAATTTATTGGGTTTTGTTCTTCTTC 175
Query 180 t------ATAGCCGTTTCATCTTCACA-TAAGCATCTTCTTCTTCTCtttttttCCTGTC 232
| |||||||||||||||||||| || ||||||||||||| | |||| ||||||
Sbjct 176 TTCTTCTATAGCCGTTTCATCTTCACAATA-GCATCTTCTTCTT-T-TTTTC--CCTGTC 230
Query 233 AAGATCCTGAATCATCGGATCTGGAAGGAAACTAGAGTTTGTGAAATCGGATGAA-TCTT 291
|||||||||||||||||||||| ||||||||||||||||||||||||| ||| || ||||
Sbjct 231 AAGATCCTGAATCATCGGATCTAGAAGGAAACTAGAGTTTGTGAAATCAGATTAAATCTT 290
Query 292 TTGAGAAATCTCTGAATAAGGTATAATTTT-TATTTCCTCTTTTAGTACTCTAATTCAAC 350
||||||||||||||| ||| | | ||| ||| | ||| ||||||||||||||||||
Sbjct 291 GTGAGAAATCTCTGAAAAAGCTGCAGGTTTCTATA-CTTCTGTTAGTACTCTAATTCAAC 349
Query 351 AGAGAGAGTCGAAT---TACTCG--TT--TA-C--TTTTGAGGAAGATGCTAAGTGGAAA 400
|||| |||||||| ||| | || || | |||||||||||||| ||||||||||
Sbjct 350 CGAGAAAGTCGAATACATACACACATTCATAACACTTTTGAGGAAGATGTTAAGTGGAAA 409
Query 401 CAATGGAAACACTGTACCACCGGTTTTCATGAACGAGAACCAGTTGCAATACCAGACAAA 460
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 CAATGGAAACACTGCACCACCGGTTTTCATGAACGAGAACCAGTTGCAATACCAGACAAA 469
Query 461 CCTACAATCGAATCAGCTTCACTTGCTTGGAA 492
||||| ||||||||||||||||||||| ||||
Sbjct 470 CCTACGATCGAATCAGCTTCACTTGCTCGGAA 501
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79065858375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5