BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471206
Length=1853
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10740.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 2691 0.0
> AT1G10740.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr1:3568169-3570760 REVERSE LENGTH=1890
Length=1890
Score = 2691 bits (1457), Expect = 0.0
Identities = 1771/1909 (93%), Gaps = 76/1909 (4%)
Strand=Plus/Plus
Query 1 GGATAAC-AAGtttttttGTTGGATGAT---A-A-A-AGAGAGAGACGACGCATTTTCCT 53
||||||| ||| |||||||||||||||| | | | |||||||||||||||||||||||
Sbjct 1 GGATAACAAAG-TTTTTTGTTGGATGATAAAAGAGACAGAGAGAGACGACGCATTTTCCT 59
Query 54 TTATTTTCTCTCGGGAAAATTCAAAGTTTTCGAATTTTATTCCTTTCTGGGTTTTCGCCA 113
||| ||| ||||||| |||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 60 TTA-TTT-TCTCGGGGAAATTCAAAGTTTTCGAATTTTCTTCCTTTCTGGGTTTTCGTCA 117
Query 114 AAGGAGCATC--CTTTATGTTCTTTAGAAAGAAGGCTCTC-TCTGTATTTGTCTCCCCTG 170
|||||||||| ||||||||||||| |||||||||||||| ||| ||||| ||||||||
Sbjct 118 AAGGAGCATCTTCTTTATGTTCTTTTGAAAGAAGGCTCTCTTCTCTATTTCTCTCCCCTC 177
Query 171 TTTCGGGGAGtttttcattttttttCAGGATAAAGGAGATTCTTTTATCTCGA--TTTTG 228
|| |||||||||||| | |||||| |||||||||||||||| |||| ||||| |||||
Sbjct 178 TTCCGGGGAGTTTTTGA--TTTTTT-AGGATAAAGGAGATTCCTTTACCTCGATTTTTTG 234
Query 229 -----C----TTATTAAATCTCCGA---TCG-----T---GG--G-A--AGAAGAAGAAG 263
| ||||||||||||||| | | | || | | |||||||||||
Sbjct 235 CTTTTCATTTTTATTAAATCTCCGATTTTTGATTTTTGGGGGAAGAAGTAGAAGAAGAAG 294
Query 264 ATGATAAAGTTGTGGATGCTGACTTCTCTTCAACTCGCGGAGCTCTTCGTGAGCTCTCTT 323
||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||| ||
Sbjct 295 ATGATTAAGTTGTGGATGATGACTTCTCTCCAACTCGCGGAGCTCTTCGTGAGCTCTATT 354
Query 324 GTGCATTTGCTTTATGGGTTTTATATATTTAGCTCCGCTGTTGCCGGAGATATCTCTCAG 383
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 355 GTGCATTTGCTTTATGGGTTTTATATATTTAGCTCCGCCGTTGCCGGAGATATCTCTCAG 414
Query 384 ACGTTGAATGATTACTTGTTTAAGTCCAATGTCGATTTCAACGACGTTGGAGAAACCGGT 443
|||||||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 415 ACGTTGAATGATTACTTGTTTAAGTCCAATGTCGCTTT------C---GGAGAAACCGGT 465
Query 444 CAAAATCAAAGCAATGTTGAGGGTTTGCCTCCAATTGTATTGGTTCATGGGATCTTTGGA 503
|||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 466 CAAAATCAAACCAATGTTGAGGGTTTGCCTCCTATTGTATTGGTTCATGGCATCTTTGGA 525
Query 504 TTTGGCAAAGGGAGATTAGGAGGCTTATCTTACTTTGGTGGTGCTGAGAAGAAAGATGAG 563
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 526 TTTGGCAAAGGGAGATTAGGAGGCTTATCTTACTTTGGCGGTGCTGAGAAGAAAGATGAG 585
Query 564 AGGGTTCTCGTTCCTGATTTGGGATCCTTAACAAGCATCTATGATAGGGCAAGGGAATTG 623
|||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 586 AGGGTTCTTGTTCCTGATTTGGGTTCCTTAACAAGCATCTATGACAGGGCAAGGGAATTG 645
Query 624 TTCTATTACTTGAAAGGAGGGGTAGTTGATTTTGGCGAAGAGCACAGCGAGGCTTGTGGA 683
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 646 TTCTATTATTTGAAAGGAGGGGTAGTTGATTTTGGCGAAGAGCATAGCGAGGCTTGTGGA 705
Query 684 CATTCTCGGTTTGGAAGAAGATACGAAGAAGGGCAATACCCTGAATGGGATGAGGATCAT 743
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 706 CATTCTCGGTTTGGAAGAAGATACGAACAAGGGCAATACCCTGAATGGGATGAGGATCAT 765
Query 744 CCTATTCATTTTGTGGGACATTCAGCGGGTGCTCAAGTTGTGCGCGTGTTGCAGCAAATG 803
||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||||
Sbjct 766 CCTATTCATTTTGTGGGGCATTCAGCGGGTGCGCAAGTTGTGCGTGTATTGCAGCAAATG 825
Query 804 CTTGCAGATAAGGCATTTGAAGGGTTTGAAGAAACGAGTGAAG-ATTGGGTTCTGAGTGT 862
||||||||| ||||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct 826 CTTGCAGATCAGGCATTTGAAGGGTTTGAAGAAACGAATG-AGAATTGGGTTCTGAGTGT 884
Query 863 GACTTCGTTATCCGGGGCATTCAATGGAACTACCAGGACTTACTTAGATGGCATGCGGAC 922
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 885 GACATCGTTATCCGGGGCATTCAATGGAACTACCAGGACCTACTTAGATGGCATGCGGAC 944
Query 923 AGATGATGGAGTGAGCATGAAACCGATATGTCTGTTGCAGCTGTGTCGTATAGGCGTGAT 982
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 945 AGATGATGGAGTGAGCATGAAACCGATATGTTTGTTGCAGCTGTGTCGTATAGGCGTGAT 1004
Query 983 AATGTACGATTGGTTGGACATTTCATGGCTAAAGACTTATTACAATTTCGGGTTCGATCA 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 AATGTACGATTGGTTGGACATTTCATGGCTAAAGACTTATTACAATTTCGGGTTCGATCA 1064
Query 1043 CTTCAACATTTCTTGGAAGAA-ATCCGGTGTGAGAGGTCTCGTTGATTGCCTCATGGGAA 1101
||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||
Sbjct 1065 CTTCAACATTTCTTGGAAGAAGA-CCGGTGTGAGAGGTCTCGTTGATTGCCTAATGGGAA 1123
Query 1102 ACGCAGGTCCTTTTGCTTCTGGCGATTGGATCTTACCTGATCTCACGATCCAAGGCTCAA 1161
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1124 ACGCAGGTCCTTTTGCTTCTGGCGATTGGATCTTACCTGATCTCACAATCCAAGGCTCAA 1183
Query 1162 CAAGTATTAACTCCAATCTCCAGACGTTCCCAAACACTTACTACTTCAGCTACGCGACTA 1221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 CAAGTATTAACTCCAATCTCCAGACGTTCCCAAACACTTACTACTTCAGCTACGCGACTA 1243
Query 1222 AACGTACCCGCAGAGTCATGGGCATGACAATCCCTTCAGGTGTTCTTGGAATCCACCCGA 1281
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1244 AACGCACCCGCAGAGTCATGGGTATGACAATCCCTTCAGGTGTTCTTGGAATCCACCCGA 1303
Query 1282 TGCTCTTCCTCCGCGTTTTTCAGATGAGCCAATGGAAATTCCCACAAGATGTATCTCCTC 1341
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1304 TGCTCTTCCTCCGCGTCTTTCAGATGAGCCAATGGAAATTCCCACAAGATGTCTCTCCTC 1363
Query 1342 CTTATAAAGGCTACAGGGATGAGGACTGGCAAGAGAACGACGGTGCATTGAACACGATAT 1401
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1364 CTTATAAAGGCTACAGGGATGAGGACTGGCAAGAGAACGACGGGGCATTGAACACAATAT 1423
Query 1402 CAATGACACATCCGAGGCTACCTGTTGAGCATCCGAGCCGGTTCATAAGGAGCGATTCGG 1461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1424 CAATGACACATCCGAGGCTACCTGTTGAGCATCCGAGCCGGTTCATAAGGAGCGATTCGG 1483
Query 1462 AATGTCAAACATTACAACCCGGGATCTGGTATTATAAGATAGTGGAAGCAGATCACATAA 1521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1484 AATGTCAAACATTACAACCCGGGATCTGGTATTATAAGATAGTGGAAGCAGATCACATAA 1543
Query 1522 TGTTCATAGTGAACAGAGAGAGAGCTGGAGTTCAGTTTGATCTGATATACGACAGTATCT 1581
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1544 TGTTCATAGTGAACAGAGAGAGAGCTGGTGTTCAGTTTGATCTGATATACGACAGCATCT 1603
Query 1582 TCCAACGCTGCAGGAAACATGTTTTTAGAAAGATTCCTCAGTCTCTCCCCAATCAATCTC 1641
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1604 TCCAACGTTGCAGGAAACATGTTTTTAGAAAGATTCCTCAGACTCTCCCCAATCAATCTC 1663
Query 1642 CTTCT-C-C-TCGTTCATCA-C--C-C--AGAAAAAACAACTTTGTACATTGATCT--T- 1689
||||| | | |||||||||| | | | |||| ||||||||||||||||||||| |
Sbjct 1664 CTTCTTCTCCTCGTTCATCATCATCACCCAGAATAAACAACTTTGTACATTGATCACATG 1723
Query 1690 -aaaaaaaaTATATGTTTTAGGGTTGATATGTTGAGGGCTTAAGTTGTT-TTTAGGCTAT 1747
|||||||| | |||||||||||||| || |||||||||||||||| || ||||||||||
Sbjct 1724 CAAAAAAAA-A-ATGTTTTAGGGTTGTTACGTTGAGGGCTTAAGTTTTTGTTTAGGCTAT 1781
Query 1748 TTATTACTAATACAGATTATTCATTGTTCTTCTTATTCTCCT-TGCTATTTGTTGTACTA 1806
||| |||||||||||||||||||||||||||||| ||||||| | | ||||||||||||
Sbjct 1782 TTACTACTAATACAGATTATTCATTGTTCTTCTTGTTCTCCTCT-CGATTTGTTGTACTG 1840
Query 1807 TAAAAC-T-TACCTTTCATTTTGAAAGTTATAATATTTGTTAGTTCGTC 1853
||||| | || ||| |||||||||| ||||||||||||||||||||||
Sbjct 1841 TAAAATATATATCTTCCATTTTGAAAATTATAATATTTGTTAGTTCGTC 1889
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91716395715
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5