BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471237
Length=1377
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11020.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily... 1997 0.0
> AT1G11020.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr1:3676691-3678524 FORWARD LENGTH=1417
Length=1417
Score = 1997 bits (1081), Expect = 0.0
Identities = 1304/1403 (93%), Gaps = 49/1403 (3%)
Strand=Plus/Plus
Query 1 AATAAAGAAGCTTTCTTTTCTCTCTCGCATTGA-----C--Ct----tttt-t-ttttGC 47
||||||||||||||| ||||||||||||||||| | || |||| | ||||||
Sbjct 35 AATAAAGAAGCTTTCGTTTCTCTCTCGCATTGACCCTTCTTCTCCAGTTTTATGTTTTGC 94
Query 48 CTCTCT-CCACTTCTG----TAATCTTCTCACATCCCCGCACGATTATTCTCCAGCCGAT 102
|||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 95 CTCTCTCCCACTTCTGTAAATAATCTTCTCACATCCCCGCACGATTATTCTCTAGCCGAT 154
Query 103 CAACGAACACAGAGACGCTAATGTGTTTGATTCGATTCGAATCCTTCTTCCTCTGATCAC 162
|||||||||||||||||||||||| ||||| |||||||||||| || |||||| |||||
Sbjct 155 CAACGAACACAGAGACGCTAATGTATTTGACTCGATTCGAATCATTAGTCCTCTAATCAC 214
Query 163 ACCGATTGATTTCCACCCACAGATTTTTTCCTTCTTCTGAAAATTTAGGGTTAGCGAAGG 222
||||||||||||||||||||||| ||| ||| |||| ||||||||||||||||||||
Sbjct 215 ACCGATTGATTTCCACCCACAGA---TTT-CTT-GTCTG-AAATTTAGGGTTAGCGAAGG 268
Query 223 TTT-GATCAATGATGCAAGGTGAAGTACAATTGCAGCCACCGGATTCACAAAAACTAAGT 281
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 269 TTTGGATCAATGATGCAAGGTGAAGTACAATTGCAGCCACCGGATTCACAGAAACTAAGT 328
Query 282 GATTCCGCTCCTTTGTTAGGAGACCACACCAATTCTTCATTTTCATCTTCTTCGGCGTCT 341
||||||||||||||||||||||| |||||||||||||| ||| | || || | | |
Sbjct 329 GATTCCGCTCCTTTGTTAGGAGATCACACCAATTCTTC---TTCGGCGTC-TC--C-T-T 380
Query 342 CCTTCTGCGTCTGTGGTGGCAGGAAATAGCGATGAGATAAAGGCT---GAAGATTTAGAG 398
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 381 -CTGCTGCGTCTGTGGTGGCAGGAAATAGCGATGAGATAAAGGCTGAAGAAGATTTAGAG 439
Query 399 AACGATGCTTCTTCAGCTCCTTGTTGTCGTATTTGTTTGGAGGACGATAGTGAATTGTTA 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 AACGATGCTTCTTCAGCTCCTTGTTGTCGTATTTGTTTGGAGGACGATAGTGAATTGTTA 499
Query 459 GGCGATGAATTGATATCACCTTGTATGTGTAAAGGCACTCAACAATTCGTGCATCGTTCA 518
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 500 GGCGATGAATTGATTTCACCTTGTATGTGTAAAGGCACTCAACAATTCGTGCATCGCTCA 559
Query 519 TGTCTCGATCATTGGCGATCGGTCAAAGAAGGTTTTGCTTTCTCTCACTGCACTACTTGC 578
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 560 TGTCTCGATCATTGGCGATCGGTTAAAGAAGGTTTTGCTTTCTCTCACTGTACTACTTGC 619
Query 579 AAAGCACAGTTTCATCTGAGAGTCGAACCTTTTGAGGATAACAATTCTTGGCGTCGAAAA 638
||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||
Sbjct 620 AAAGCACAGTTTCATCTGAGAGTCGAACCCTTTGAGGATAACAATTCGTGGCGTAGAAAA 679
Query 639 GCTAAATTCAGACTCTTTGTCGCAAGAGATGTGCTTTTGGTATTCTTAGCTGTGCAGACT 698
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 680 GCTAAATTCAGACTCTTTGTCGCAAGAGATGTGCTTTTGGTTTTCTTAGCTGTGCAGACT 739
Query 699 GTTATTGCTGTGATGGCCGGATTGGCATATATGATGGACAAAGACGGAGAGTTTCGCAAC 758
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 740 GTTATCGCTGTGATGGCCGGATTCGCATATATGATGGACAAAGACGGAGAGTTTCGCAAC 799
Query 759 TCTTTCAATGATGATTGGGATCGTATATTGTCGAAACATCCCATCCCCTTTTATTACTGC 818
|||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 800 TCTTTCAACGATGATTGGGATCGTATTTTGTCGAAACATCCCATCCCGTTTTATTACTGC 859
Query 819 ATTGGGGTTATATCCTTCTTTGTGCTGACTGGATTTCTTGGAATCATTCTGCATTGCTCT 878
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 860 ATTGGGGTTATATCCTTCTTTGTGCTGACTGGATTTCTTGGAATCATTCTACATTGCTCT 919
Query 879 GCTATTAACGGTAATGACCCGAGGATGGCTGGATGCCAGAACTGCTGTTATGGATGGGGT 938
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 920 GCTCTCAACGGTAATGACCCGAGGATGGCTGGATGCCAGAACTGCTGTTATGGATGGGGT 979
Query 939 GTCTTGGATTGTTTCCCTGCTTCAATGGAAGCATGTTTCGCTCTTGTTGTTGTCTTTGTC 998
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 980 GTCTTGGATTGTTTCCCTGCTTCAATGGAAGCTTGTTTCGCTCTTGTTGTTGTTTTTGTC 1039
Query 999 GTCATCTTCGCCATTCTTGGTCTAGCTTATGGGTTTCTTGCTGCTACTATGGCTATCCAA 1058
|||||||| |||||||||||| |||| ||||||||||||||||| |||||||||||||||
Sbjct 1040 GTCATCTTTGCCATTCTTGGTTTAGCGTATGGGTTTCTTGCTGCAACTATGGCTATCCAA 1099
Query 1059 AGGATATGGCAGAGACATTACCATATTCTCACCAAGCGAGAGCTCACAAAAGAGTACATC 1118
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1100 AGGATATGGCAGAGACATTACCATATTCTCACCAAGCGAGAGCTCACAAAGGAGTACATT 1159
Query 1119 GTGGAGGATCTTCATGGAAGTTACACTCCCCCGAAGCTGGATGCGGAGCACGAAGGAAGA 1178
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1160 GTGGAGGATCTTCACGGAAGTTACACTCCCCCGAAGCTGGATGCAGAGCACGAAGGAAGA 1219
Query 1179 CTGAAAATGCTGAAACTTCTGTGACCGTGTTTTCTTTAACTGTCAAATAAAGGTTCTATG 1238
||||||||||||||||||||||||||||||||| || |||||||||||||||||| || |
Sbjct 1220 CTGAAAATGCTGAAACTTCTGTGACCGTGTTTT-TT-AACTGTCAAATAAAGGTTGTAAG 1277
Query 1239 GAGTTTCGGGCACATTAGAGAGACAAGTTCACTACATACATCTTTGTTCACAGAGATGTC 1298
||||||||||||||| |||||||| |||||| ||| || || |||||||||| ||||
Sbjct 1278 GAGTTTCGGGCACATGAGAGAGACGAGTTCA-TACGTATAT----GTTCACAGAG-TGTC 1331
Query 1299 TTTCTTTTCTTTATCATG-GATGAAAAGTACCTAATGGATATGTTGTCTTATATATATTT 1357
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1332 TTTCTTTTCTTTATCATGCGATGAAAAGTACCTAATGGATATTTTGTCTTATATATATTT 1391
Query 1358 ATGAT--T-ATGATATGAGGTGA 1377
|| || | ||| ||||||||||
Sbjct 1392 ATTATAATTATGGTATGAGGTGA 1414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67820936295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5