BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471258 Length=663 Score E Sequences producing significant alignments: (Bits) Value AT1G11240.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Nucleolar... 1026 0.0 > AT1G11240.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 Blast hits to 1934 proteins in 262 species: Archae - 0; Bacteria - 90; Metazoa - 921; Fungi - 378; Plants - 144; Viruses - 18; Other Eukaryotes - 933 (source: NCBI BLink). | chr1:3766754-3768294 REVERSE LENGTH=867 Length=867 Score = 1026 bits (555), Expect = 0.0 Identities = 627/663 (95%), Gaps = 0/663 (0%) Strand=Plus/Plus Query 1 TTTTGACCTGAGTCGCTTCGTTTCCGATCGGAGGAAGTCTCTGGCGATGAAGGAAGGCTT 60 ||||||||||| ||||||||||||||||||||||||| ||||| ||||| || |||||| Sbjct 37 TTTTGACCTGAACCGCTTCGTTTCCGATCGGAGGAAGTATCTGGTGATGACGGGAGGCTT 96 Query 61 GGATAATGAGGAGGCGGGTTCACTGGCTCCGCCGACCAGCGCTAGGCATATTGGGAAGAG 120 | |||||||||||||||||||||||||| ||||||| || |||||||| ||||||||||| Sbjct 97 GCATAATGAGGAGGCGGGTTCACTGGCTACGCCGACTAGTGCTAGGCACATTGGGAAGAG 156 Query 121 AGCTCGCAAGAACAAAAGCCTCACCGTCTCTTTTGACGAGAAAGATCTCAAGGATTTTGT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 157 AGCTCGCAAGAACAAAAGCCTCACCGTCTCTTTTGACGAGAAAGATCTCAAGGATTTTGT 216 Query 181 GACTGGTTTTCACaagaggaagaagaaaagaagaaaggaagctcagaagcagcaggagga 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 217 GACTGGTTTTCACAAGAGGAAGAAGAAAAGAAGAAAGGAAGCTCAGAAGCAGCAGGAGGA 276 Query 241 agcTTTGAGGCGGAAACGTATCGAGGCCCGTAAGAATAGGAAATTGGAAGAGCTAATGGT 300 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 277 AGCTTTTAGGCGGAAACGAATCGAGGCCCGTAAGAATAGGAAATTGGAAGAGCTAATGGT 336 Query 301 TGCTGGTCATGGCGACGATAATGAAGATGGGGAAGCTGAAGATGAAGAGGATGCAGAGGA 360 ||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||| Sbjct 337 TGCTGGTAATGGCGAGGATAATGAAGATGGGGAAGCTGAAGATGAAGTGGATGCAGAGGA 396 Query 361 CGAAGAAGCAGAACCTGATGCTTCAACGTCTGGCACGACGATGTATGATACAGGCGAGCT 420 ||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| | Sbjct 397 TGAAGAAGCAGAGCCTGATGCTTCAACATCTGCCACGACGATGTATGATACAGGCGAGTT 456 Query 421 GAAAGTAACTGTGACAACAAGCGCGATATCTTGTGAAGAGGAAGAGCCTATTCGCAAGGA 480 ||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||| Sbjct 457 GAAAGTAACTGTGACAACAAGTGAGATATCTCGTGAAGAGGAAGAGCCTATTCGCAAGGA 516 Query 481 CAAGACCCAGTCAACAGAATCGGGTTCCACGGCCAAAGCCTCCACAAAGCAGCCTGTGCC 540 ||||| || ||||||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 517 GAAGACTCAATCAACAGAATCAGGTTCCACGGCCAAAGCTTCCACAAAGCAGCCTGTGCC 576 Query 541 TGTGAGGAAAACCAAACCCATGAAACAGAGCAGGAAACGGTCAAGCACCAAAACTATGAA 600 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 577 TGTGAGGAAAACCAAACCCATGAAACAGAGCAGGAGACGGTCAACCACCAAAACTATGAA 636 Query 601 GAAAAGGGATAAGAAGAAACAAGCAAGAGGGATAAAGACTCCGCGGTAGGAATAGAAATT 660 ||||||||||||||||||||||||||||||||| |||||| |||| ||||| ||||||| Sbjct 637 GAAAAGGGATAAGAAGAAACAAGCAAGAGGGATCAAGACTTCGCGATAGGAGTAGAAATG 696 Query 661 TCT 663 ||| Sbjct 697 TCT 699 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32049385786 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5