BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471289
Length=545
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11530.1 | Symbols: ATCXXS1, CXXS1 | C-terminal cysteine res... 852 0.0
> AT1G11530.1 | Symbols: ATCXXS1, CXXS1 | C-terminal cysteine residue
is changed to a serine 1 | chr1:3874437-3875484 FORWARD
LENGTH=611
Length=611
Score = 852 bits (461), Expect = 0.0
Identities = 516/543 (95%), Gaps = 2/543 (0%)
Strand=Plus/Plus
Query 4 AAGCTCCAAGAGATGGCAAGAGTTGTTAAAATCGATTCTGCAGAGTCATGGAACTTT-TA 62
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 70 AAGCTCCAAGAGATGGCAAGAGTTGTTAAAATCGATTCTGCAGAGTCATGGAA-TTTCTA 128
Query 63 TGTGAGTCAAGCCAAGAATCAGAATTGTCCTATTGTGGCTCATTTCACTGCATCATGGTG 122
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 129 TGTGAGTCAAGCCAAGAATCAGAATTGTCCCATTGTGGCTCATTTCACTGCATTATGGTG 188
Query 123 TATTCCTTCGGTGTTTATGAACTCGTTCTTCGAAGAGCTTGCGTTTAGCTATAAGGATGC 182
||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 189 TATTCCTTCTGTGTTTATGAACTCCTTCTTCGAAGAGCTTGCGTTTAACTATAAGGATGC 248
Query 183 TCTATTTCTCATAGTTGATGTTGATGAAGTTAAGGAAGTGGCAAGTCAACTAGAGGTAAA 242
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 TCTGTTTCTAATAGTTGATGTTGATGAAGTTAAGGAAGTGGCAAGTCAACTAGAGGTAAA 308
Query 243 GGCGATGCCAACTTTCTTGTTCTTGAAGGATGGTAATGCGATGGACAAAATCGTGGGCGC 302
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 309 GGCGATGCCAACTTTCTTGTTCTTGAAGGATGGTAATGCGATGGACAAACTCGTGGGCGC 368
Query 303 AAACCCTGATGAAATCAAGAAAAGGGTCGATGGTTTCGTTCAGTCCTCACGAGTTGTTAA 362
|||||||||||| || |||||| |||||||||||||||||||||||||||| |||||| |
Sbjct 369 AAACCCTGATGAGATTAAGAAACGGGTCGATGGTTTCGTTCAGTCCTCACGTGTTGTTCA 428
Query 363 TATTGCTTAAGAGAGATATATAGATAAGAGCAGAGTACTAAATAAAGTTTGTGTGAAGTG 422
||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||
Sbjct 429 TATTGCTTAAGAGAGATTTATAGATACGAGCAGAATACTAAATAAAGTTTGTGTGAAGTG 488
Query 423 TAATTAGTTTGTGACTTTGGTATATGGTTTCTGTGAAATTTCAAGTGTAAGTGTAAATTT 482
|||||||||||| |||||||||| |||||| |||||||| ||||||||||||||||||||
Sbjct 489 TAATTAGTTTGTAACTTTGGTATTTGGTTTGTGTGAAATATCAAGTGTAAGTGTAAATTT 548
Query 483 TAATAAAAACAAGTTCTGTTCTAAAAAAGAACTGGTTTTATTTAATTTTGGTTCTTAACA 542
| |||||| ||||||||||| |||| ||||||||| ||||||||||||||||||||||||
Sbjct 549 TTATAAAAGCAAGTTCTGTTATAAACAAGAACTGGATTTATTTAATTTTGGTTCTTAACA 608
Query 543 GGG 545
|||
Sbjct 609 GGG 611
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26121756440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5