BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471293
Length=1813
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11580.1 | Symbols: ATPMEPCRA, PMEPCRA | methylesterase PCR ... 2641 0.0
AT4G03926.1 | Symbols: | pseudogene, similar to Pectinesterase... 427 2e-118
AT5G28287.1 | Symbols: | pseudogene, hypothetical protein | ch... 366 4e-100
> AT1G11580.1 | Symbols: ATPMEPCRA, PMEPCRA | methylesterase PCR
A | chr1:3888690-3890811 FORWARD LENGTH=1876
Length=1876
Score = 2641 bits (1430), Expect = 0.0
Identities = 1615/1705 (95%), Gaps = 9/1705 (1%)
Strand=Plus/Plus
Query 1 TTTACCTCTAAAGCCAAAGACC-A-ATGTCTAATTCAAACCAACCACTTCTTTCCAAACC 58
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 16 TTTACCTCTAAAGCCAAAGACCAACATGTCTAATTCAAACCAACCACTTCTTTCCAAACC 75
Query 59 AAAGTCTTTTAAGCACAAGAATCTATGCCTTGTCCTCTCCTTTGTAGCCATTCTTGGCTC 118
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 76 AAAGTCTCTTAAGCACAAGAATCTATGCCTTGTCCTCTCCTTCGTAGCCATTCTTGGCTC 135
Query 119 TGCT-GCTATCTACACATCCCAACTAATATCCATTAACACCAGC---AATGATGATTCCT 174
|| | ||| ||| |||| ||||| |||| ||| ||||||||| | |||||||||||||
Sbjct 136 TG-TGGCTTTCTTCACAGCCCAATTAATCTCCGTTAACACCAACAATAATGATGATTCCT 194
Query 175 TATTAACCCCGAGCCAGATTTGCCATGGAGCTCACGACCAAGACTCATGCCAAGCTCTCT 234
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 TATTAACTACGAGCCAGATTTGCCATGGAGCTCACGACCAAGACTCATGCCAAGCTCTCT 254
Query 235 TGTCCGAATTCACGACGTTGTCGCTCTCAAAGCTCAACCGCCTCGACCTATTGCACGTGT 294
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 255 TGTCCGAATTCACGACGTTGTCGCTCTCAAAGCTCAACCGCCTTGACCTATTGCACGTGT 314
Query 295 TCTTGAAGAACTCGGTGTGGCGGCTTGAGAGCACGATGACCATGGTGAGCGAGGCTAGGA 354
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 TTTTGAAGAACTCGGTGTGGCGGCTTGAGAGCACGATGACCATGGTGAGCGAGGCTAGGA 374
Query 355 TCCGCTCCAACGGTGTGAGAGACAAGGCAGGTCTTACTGACTGCGAGGAGATGATGGACG 414
||||||| |||||||| ||||||||||||||| || ||||||||||||||||||||||||
Sbjct 375 TCCGCTCGAACGGTGTTAGAGACAAGGCAGGTTTTGCTGACTGCGAGGAGATGATGGACG 434
Query 415 TATCAAAGGATCGGATGGTGAGTTCGATGGAGGAACTCCGGGGAGGAAACTACAATCTTG 474
||||||||||||||||| ||||||||||||||||||| || ||||||||||| |||||||
Sbjct 435 TATCAAAGGATCGGATGATGAGTTCGATGGAGGAACTTCGCGGAGGAAACTATAATCTTG 494
Query 475 AGTCATACTCAAACGTTCACACTTGGCTAAGCAGTGTGCTCACAAACTACATGACATGTT 534
||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct 495 AGTCATACTCAAACGTTCATACTTGGCTGAGCAGTGTGCTTACAAACTACATGACATGTT 554
Query 535 TAGAAAGTATTAGCGATGTCTCCGTTAACTCTAAGCAAAGAGTCAAGCCACAAATCGAGG 594
||||||||||||| ||||||||||| ||||||||||||| ||||||||||||| ||||||
Sbjct 555 TAGAAAGTATTAGTGATGTCTCCGTCAACTCTAAGCAAATAGTCAAGCCACAACTCGAGG 614
Query 595 CCTTAGTTTCTAGGGCTAGAGTGGCTCTAGCCATCTTTGTCTCCGTCTTGCCTGCCAGAG 654
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 ACTTGGTTTCTAGGGCAAGAGTGGCTCTAGCCATCTTTGTCTCCGTCTTGCCTGCCAGAG 674
Query 655 ACGATCTCAAGATGATCATTTCCGATCGCTTTCCGTCGTGGCTAACTGCTCTTGACAGAA 714
|||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 675 ACGATCTCAAAATGATCATTTCCAATCGCTTCCCGTCGTGGCTAACTGCTCTTGACAGAA 734
Query 715 AGCTTTTAGAATCTGCTCCTAAGACACTTAAGGTGACCGCCAACGTTGTGGTGGCAAAAG 774
|||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 735 AGCTTTTAGAATCTTCTCCCAAGACACTTAAGGTGACCGCGAACGTTGTGGTGGCAAAAG 794
Query 775 ATGGCACCGGAAAATTCAAAACAGTAAATGAGGCAGTGGCAGCAGCACCGGAGAATAGCA 834
| ||||||||||| ||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct 795 ACGGCACCGGAAAGTTCAAAACAGTGAATGAGGCAGTGGCGGCAGCACCGGAGAACAGCA 854
Query 835 ATTCCAGATACGTTATATATGTGAAGAAAGGGGTTTACAAGGAAACTATTGACATAGGAA 894
|| | |||||||||||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct 855 ATACAAGATACGTTATATACGTAAAGAAAGGGGTTTACAAAGAAACTATTGACATAGGAA 914
Query 895 AGAAAAAGAAGAACTTAATGCTTGTTGGTGATGGCAAAGACGCAACGATCATAACCGGTA 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 AGAAAAAGAAGAACTTAATGCTTGTTGGTGATGGCAAAGACGCAACGATCATAACCGGTA 974
Query 955 GTTTGAATGTCATTGATGGATCCACCACCTTCAGATCAGCCACTGTTGCTGCCAATGGAG 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 GTTTGAATGTCATTGATGGATCCACCACCTTCAGATCAGCCACTGTTGCTGCCAATGGAG 1034
Query 1015 ACGGGTTTATGGCACAAGACATATGGTTCCAAAACACTGCAGGGCCAGCAAAGCACCAGG 1074
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1035 ACGGGTTTATGGCACAAGACATATGGTTCCAAAACACTGCAGGGCCGGCAAAGCACCAGG 1094
Query 1075 CTGTGGCTCTCCGCGTGAGCGCTGATCAAACTGTTATAAATCGTTGCCGCATAGATGCGT 1134
|||||||||| || ||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1095 CTGTGGCTCTACGAGTGAGTGCTGATCAAACTGTTATAAATCGTTGTCGCATAGATGCGT 1154
Query 1135 ACCAAGACACGCTCTACACTCACACCCTGCGACAATTCTACCGCGATAGCTACATAACTG 1194
| ||||||||||||||||||||||| || |||||||||||||||| |||||||| || |
Sbjct 1155 ATCAAGACACGCTCTACACTCACACGTTGAGACAATTCTACCGCGACAGCTACATCACCG 1214
Query 1195 GTACGGTAGATTTCATCTTCGGAAACTCTGCGGTGGTATTCCAGAACTGCGATATCGTGG 1254
|||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1215 GTACCGTAGATTTCATCTTCGGAAACTCTGCTGTGGTATTCCAGAACTGCGACATCGTGG 1274
Query 1255 CCCGAAATCCTGGAGCTGGGCAAAAGAACATGTTGACAGCTCAAGGGCGGGAGGATCAGA 1314
| |||||||||||||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct 1275 CACGAAATCCTGGAGCTGGGCAAAAGAACATGTTAACGGCTCAAGGACGGGAGGATCAGA 1334
Query 1315 ACCAGAACACAGCCATTTCGATCCAAAAATGTAA-ATTAACGGCTAGCTCAGATCTTGCT 1373
|||||||||| ||||||||||||||||||||||| || ||||||||| || |||||||||
Sbjct 1335 ACCAGAACACCGCCATTTCGATCCAAAAATGTAAGAT-AACGGCTAGTTCGGATCTTGCT 1393
Query 1374 CCTGTAAAAGGATCTGTGAAAACGTTCCTTGGACGGCCGTGGAAGTTGTACTCAAGAACA 1433
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1394 CCTGTAAAAGGATCTGTGAAAACGTTCCTTGGTCGACCGTGGAAGTTGTACTCAAGAACA 1453
Query 1434 GTGATCATGCAGTCTTTCATTGACAACCACATTGACCCGGCTGGTTGGTTCCCATGGGAT 1493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1454 GTGATCATGCAGTCTTTCATTGACAACCACATTGACCCGGCTGGTTGGTTCCCATGGGAT 1513
Query 1494 GGCGAGTTTGCGCTCTCGACATTGTACTATGGAGAGTATGCCAATACCGGTCCTGGAGCG 1553
|| |||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1514 GGTGAGTTTGCGCTCTCCACATTGTATTATGGAGAGTATGCAAATACCGGTCCTGGAGCG 1573
Query 1554 GATACTAGTAAGAGAGTGAAGTGGAAGGGATTTAAAGTTATTAAAGACTCAAAGGAGGCC 1613
||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1574 GATACGAGTAAGAGAGTGAATTGGAAGGGATTTAAAGTTATTAAAGACTCAAAAGAGGCC 1633
Query 1614 GAACAATTTACTGTAGCGAAGCTTATTCAAGGAGGATTATGGTTGAAGCCCACTGGAGTT 1673
|||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1634 GAACAATTCACTGTGGCGAAGCTTATTCAAGGAGGATTATGGTTGAAACCCACTGGAGTT 1693
Query 1674 ACTTTCCAAGAGTGGCTTTGATTTT 1698
|||||||||||||||||||||||||
Sbjct 1694 ACTTTCCAAGAGTGGCTTTGATTTT 1718
> AT4G03926.1 | Symbols: | pseudogene, similar to Pectinesterase
3 precursor (EC 3.1.1.11) (Pectin methylesterase 3) (PE 3).
(Tomato), blastp match of 61% identity and 9.6e-28 P-value
to SP|Q96576|PME3_LYCES Pectinesterase 3 precursor (EC 3.1.1.11)
(Pectin methylesterase 3) (PE 3). (Tomato) {Lycopersicon
esculentum} | chr4:1867902-1868186 FORWARD LENGTH=285
Length=285
Score = 427 bits (231), Expect = 2e-118
Identities = 266/283 (94%), Gaps = 2/283 (1%)
Strand=Plus/Plus
Query 1410 CCGTGGAAGTTGTACTCAAGAACAGTGATCATGCAGTCTTTCATTGACAACCACATTGAC 1469
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 4 CCGTGGAAGTTGTACTCAAGAACAGTGATCATTTTGTCTTTCATTGACAACCACATTGAC 63
Query 1470 CCGGCTGGTTGGTTCCCATGGGATGGCGAGTTTGCGCTCTCGACATTGTACTATGGAGAG 1529
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 64 CCGGCTGGTTGGTTCCCATGGGATGGCGAGTTTGCGCTCTCCACATTGTATTATGGAGAG 123
Query 1530 TATGCCAATACCGGTCCTGGAGCGGATACTAGTAAGAGAGTGAAGTGGAAGGGATTTAAA 1589
||||| ||||| ||||||||||||||||| || ||||||||||| || ||||||||||||
Sbjct 124 TATGCGAATACTGGTCCTGGAGCGGATACGAGCAAGAGAGTGAATTGCAAGGGATTTAAA 183
Query 1590 GTTATTAAAGACTCAAAGGAGGCCGAACAATTTACTGTAGCGAAGCTTATTCAAGGAGGA 1649
||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 184 GTTATTAAAGACTCAAAAGAGGCCGAACAATTCACTGTGGCGAAGCTTATTCAAGGAGGA 243
Query 1650 TTATGGTTGAAGCCCACT-GGAGTTACTTTCCAAGAGTGGCTT 1691
||||||||||| |||| | ||||||||||||||||||||||||
Sbjct 244 TTATGGTTGAAACCCA-TAGGAGTTACTTTCCAAGAGTGGCTT 285
> AT5G28287.1 | Symbols: | pseudogene, hypothetical protein |
chr5:10275172-10275542 REVERSE LENGTH=371
Length=371
Score = 366 bits (198), Expect = 4e-100
Identities = 247/270 (91%), Gaps = 6/270 (2%)
Strand=Plus/Plus
Query 1296 CAAGGGCGGGAGGATCAGAA-CCAGAACACAGCCATTTCGATCCAAAAATGTAA-ATTAA 1353
||||| |||||||||||||| || ||||||||||||||||||| |||||||||| | |||
Sbjct 7 CAAGGACGGGAGGATCAGAATCC-GAACACAGCCATTTCGATCTAAAAATGTAAGA-TAA 64
Query 1354 CGGCTAGCTCAGATCTTGCTCCTGT-AAAAGGATCTGTGAAAACGTTCCTTGGACGGCCG 1412
|||| || ||||||||||||||||| |||||||| |||||||| ||||||||||| ||||
Sbjct 65 CGGCAAGTTCAGATCTTGCTCCTGTAAAAAGGATATGTGAAAATGTTCCTTGGACAGCCG 124
Query 1413 TGGAAGTTGTACTCAAGAACAGTGATCATGCAGTCTTTCATTGACAACCACATTGACCCG 1472
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 125 TGGAAGTTGTTCTCAAGAACAGTGATCATGCAGTCTTTCATTGACAAGCACATTGACCCG 184
Query 1473 GCTGGTTGGTTCCCATGGGATGGCGAGTTTGCGCTCTCGACATTGTACTATGGAGAGTAT 1532
||||||||||||||||||||| |||||||| |||||| ||||||||||||| |||||||
Sbjct 185 ACTGGTTGGTTCCCATGGGATGCCGAGTTTGTGCTCTCCACATTGTACTATGTAGAGTAT 244
Query 1533 GCCAATACCGGTCCTG-GAGCGGATACTAG 1561
|| |||||||||||| ||||||||| |||
Sbjct 245 GCGAATACCGGTCCTAAGAGCGGATAGTAG 274
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89708373915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5