BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471294
Length=1531
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28237.1 | Symbols: | Pyridoxal-5'-phosphate-dependent enzy... 2451 0.0
> AT5G28237.1 | Symbols: | Pyridoxal-5'-phosphate-dependent enzyme
family protein | chr5:10207353-10213598 REVERSE LENGTH=1578
Length=1578
Score = 2451 bits (1327), Expect = 0.0
Identities = 1449/1510 (96%), Gaps = 0/1510 (0%)
Strand=Plus/Plus
Query 22 AATGTCGTCCGGTAAAATCCAGGTACGAGGGCAGCCACTTCCTAGGGTTCCAGCAAGAAA 81
|||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 56 AATGTCGTCCAGTAAAATCCAGGTACGAGGGCAGCCACTTCTTAGGGTTCCGGCAAGAAA 115
Query 82 CCACCATATGACACACTTGCTTGTTTGCGGCGTTTCCACAAAACGCCACCACCGTGAAAT 141
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 116 CCACCGTATGACACACTTGGTTGTTTGCGGCGTTTCCACAAAACGCCACCACCGTGAAAT 175
Query 142 CAACGCAATCAGCCGTAATAGAAGTCCATCGTTGGATTCGGTCCCAACAAGAACCGACAA 201
||| ||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 176 CAATGCACTCAGCAGTAATAGTGGTCCATCGTTGGATTCGGTCCCAACAAGAACCGACAA 235
Query 202 GAGGCAGTTTCTTCGTGGTGACGGTAATGGTAAATTCGGGAGGTTCGGTGGGAAGTTTGT 261
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 236 GAGGCAGTTTCTTCGTGGTGACGGTAACGGTAAATTCGGGAGGTTCGGTGGGAAGTTTGT 295
Query 262 ACCGGAGACATTGATGTCTCGCCTGATGGAACTTGAAGACGAATTTAATTTTGTTATGAG 321
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| | |
Sbjct 296 ACCGGAGACATTGATGTCTCGCCTGATAGAACTTGAAGACGAATTTAACTTTGTTAGGTG 355
Query 322 CGATCATGAATTTCAGGAGGAGCTTACCACAGCGTTAAGAGACTACGTAGGAAGAGAAAC 381
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 CGATCACGAATTTCAGGAGGAGCTTACCACAGCGTTAAGAGACTACGTAGGAAGAGAAAC 415
Query 382 GCCTCTCTACTTCGCCGAACGTCTAACCGAACACTACAAGAACATAGTTCCAACCATCGA 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 GCCTCTCTACTTCGCCGAACGTCTAACCGAACACTACAAGAACATAGTTCCAACCATCGA 475
Query 442 AGGTGGACCTGAGATATACCTGAAACGGGAAGATCTTAGCCACTGTGGGTCTCACAAAAT 501
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 476 AGGTGGACCAGAGATATACTTGAAACGGGAAGATCTTAGCCACTGTGGGTCTCACAAAAT 535
Query 502 CAATAATTCTCTCGCTCAGGCCATGATTTCCCGGCGGCTTGGTTGCAGCCGTGTGGTGGC 561
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 CAATAATGCTCTCGCTCAGGCCATGATTTCCCGGCGGCTTGGTTGCAGCCGTGTGGTGGC 595
Query 562 GGCCACTGGATCCGGACAACATGGAGTCGCCACAGCGGCTGCATGTGCAAAGCTCTCCTT 621
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 GGCCACTGGAGCCGGACAACATGGAGTCGCCACAGCGGCTGCATGTGCAAAGCTCTCCTT 655
Query 622 GGAGTGTACCGTTTTCATGGGAGCTACTGATATAGAGAAACAATCCTTTAATGTACGTTC 681
||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 656 GGAGTGTACTGTTTTCATGGGAGCTGCTGATATAGAGAAACAATCCTTTAATGTACTTTC 715
Query 682 CATGAAACTCCTTGGTGCTCAGGTGAAATCAGTGGAAGGAACATTCAAAGATGCAAGTTC 741
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 716 CATGAAACTCCTTGGTGCTCAGGTTATATCAGTGGAAGGAACATTCAAAGATGCAAGTTC 775
Query 742 AGAAGCAATTCGAAACTGGGTCGAAAACCTATATACCACATACTACTTATCGGGTACTGT 801
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 776 AGAAGCTATACGAAACTGGGTCGAAAACCTATATACCACATACTACTTATCGGGTACGGT 835
Query 802 GGTAGGACCACATCCGTGTCCGATAATAGTACGTGAGTTTCAATCTGTGATCGGGAAAGA 861
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 CGTAGGACCGCATCCGTGTCCGATAATAGTACGTGAGTTTCAATCTGTGATCGGGAAAGA 895
Query 862 GACAAGAAGGCAAGCCAATCAACTATGGGGTGGTAAACCTGATGTATTGGTGGCTTGTGT 921
|||||||||||||||||| ||||||||||||||||| |||||||| |||||||| |||||
Sbjct 896 GACAAGAAGGCAAGCCAAGCAACTATGGGGTGGTAAGCCTGATGTGTTGGTGGCCTGTGT 955
Query 922 GGGAAGTGGCTCTAATGCATTGGGTTTGTTCCATGAGTTTGTTGGGGATAAGGATGTGCG 981
|||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 956 GGGAAGTGGCTCAAACGCATTGGGTTTGTTCCATGAGTTTGTTGGGGATGAGGATGTGCG 1015
Query 982 GTTAGTCGGTGTCGAGGCTGCTGGGCTCGGTCTGGATTCGGGGAAACATTCAGCTACTTT 1041
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1016 GTTAGTCGGTGTCGAGGCTGCGGGGCTTGGTCTGGATTCGGGGAAACATTCAGCTACTTT 1075
Query 1042 GGCCGTTGGAGGTGTTGGTGTATACCATGGTTCTATGAGCTATTTATTGCAAGATGATCA 1101
|||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1076 GGCCTTTGGAGATGTTGGTGTATACCATGGTTCCATGAGCTATTTATTGCAAGATGATCA 1135
Query 1102 AGGACAGATACTTAAACCACACTCCGTAGGAGTTGGGTTAGAGTATCCCGGAGTTGGACC 1161
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1136 AGGACAGATACTTAAACCACACTCCGTAGGTGTTGGGTTAGAGTATCCCGGAGTTGGACC 1195
Query 1162 GGAGATTAGTTTCATGAAAGAAACTGGCAGAGCCGAGTTCTATACAGCAACAGACGAAGA 1221
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1196 GGAGATTAGTTTCATGAAAGAAACTGGCAGAGCGGAGTTCTATACAGCAACAGACGAAGA 1255
Query 1222 AGCCATTCAAGCGTGCATGCGATTAAGCAGATTGGAGGGAATAATACCGGCATTGGAAGC 1281
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1256 AGCAATTCAAGCGTGCATGCGATTAAGCAGATTGGAGGGAATAATACCGGCATTAGAAGC 1315
Query 1282 GTCTCACGCGCTCGCGTTCCTCGACAAACTCGTTCCTACTCTGCGCGATGGAGCCAAGGT 1341
||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 1316 GTCTCACGCGCTCGCGTTCCTCGACAAACTCGTGCCTACTCTTCGTGATGGAGCCAAGGT 1375
Query 1342 GGTCGTTAATTGCAGTGGCCGTGGTGACAAAGATTTAGATACTCTCATCCAACGAGGCAT 1401
||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 GGTAGTGAACTGCAGTGGCCGTGGTGACAAAGATTTAGATACTCTCATCCAACGAGGCAT 1435
Query 1402 GCCCTCTTCTTTGTGTTGACTCACCAAGATGCCACATTACACTTAACTCTTTTAGAAAAC 1461
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 GCCTTCTTCTTTTTGTTGACTCACCAAGATGCCACATTACACTTAACTCTTTTAGAAAAC 1495
Query 1462 GTATCGTCTAATTACAACCATCATTATAGATGATATACTAATATATCAATTATTATTTAA 1521
|||| ||| ||| |||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 1496 GTATGGTCCAATCACAACCATCATTATAGATGAAATACTAATATATCAATCATTATTTAA 1555
Query 1522 AATTTCGATT 1531
||||||||
Sbjct 1556 TTTTTCGATT 1565
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75551820225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5