BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471306
Length=1760
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11670.1 | Symbols: | MATE efflux family protein | chr1:392... 2532 0.0
> AT1G11670.1 | Symbols: | MATE efflux family protein | chr1:3928162-3931576
REVERSE LENGTH=1964
Length=1964
Score = 2532 bits (1371), Expect = 0.0
Identities = 1475/1527 (97%), Gaps = 0/1527 (0%)
Strand=Plus/Plus
Query 1 aaaaaaaTGGGTTCGGAAGCGACCACCGCCGTGGACAACCTGCAGCAACCGTTACTTGAG 60
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||
Sbjct 89 AAAAAAATGGGTTCGGAAGCGACCACCGCCGTGAACAACCTTCAGCAACCGTTACTGGAG 148
Query 61 TCATCGAAATCGGAAGCTGACTTCAGGATGGAGAGTGTATTAACGGACACACACTTGTCA 120
||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 TCAACAAAATCAGAAGCTGACTTCAGGATGGAGAGTGTATTAACGGACACACACTTGTCA 208
Query 121 TATTTCCGGCGGATCTACCTTGCGTCGTTGATAGAGATGAAGTACCTTTTCCACTTGGCA 180
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 209 TATTTTCGGCGGATCTACCTTGCGTCGTTGATCGAGATGAAGTACCTTTTCCACTTGGCG 268
Query 181 GCTCCGGCGATCTTTGTCTACGTCATCAACAACGGCATGTCTATGCTCACTCGTATCTTC 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 269 GCTCCGGCGATCTTTGTCTACGTCATCAACAATGGCATGTCTATGCTCACTCGTATCTTC 328
Query 241 GCTGGTCGTTTGGGAAGTATGCAACTCGCTGCTGCTTCTCTTGGTAACAGCGGTTTCAAT 300
|||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 329 GCTGGTCGTTTGGGAAGTATGCAACTCGCTGCCGCTTCTCTAGGAAACAGCGGTTTCAAT 388
Query 301 ATGTTCACTCTTGGTCTCATGCTTGGAATGGGAAGTGCAGTGGAGACATTATGTGGGCAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 389 ATGTTCACTCTTGGTCTCATGCTTGGAATGGGAAGTGCAGTGGAGACATTATGTGGGCAA 448
Query 361 GCGCATGGAGCTCACAGATACGACATGCTTGGAGTCTATTTACAAAGATCCACGATTGTT 420
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 449 GCGCATGGAGCTCATAGATACGACATGCTTGGAGTCTACTTACAAAGATCCACGATTGTT 508
Query 421 CTTGTCATCACCGGACTTCCAATGACTTTACTCTTCATCTTCTCAAAACCTCTCCTCATT 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 CTTGTCATAACCGGACTTCCAATGACTTTACTCTTCATCTTCTCAAAACCTCTCCTCATT 568
Query 481 TCCTTAGGCGAGCCAGCTGACGTAGCATCAGTGGCCTCAGTCTTTGTCTACGGAATGATC 540
||||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||||
Sbjct 569 TCCTTAGGCGAGCCAGCTGACGTAGCATCAGTGGCATCAGTATTCGTCTACGGTATGATC 628
Query 541 CCAATGATCTTCGCTTATGCCGTCAATTTCCCCATCCAAAAGTTCCTCCAGTCGCAAAGC 600
||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||
Sbjct 629 CCAATGATCTTCGCTTACGCCGTCAACTTCCCCATCCAAAAGTTTCTCCAGTCGCAAAGC 688
Query 601 ATCGTCACACCAAGCGCTTACATCTCAGCCGCAACACTAGTCCTCCATTTAATCCTCTCT 660
|||||||| || || ||||| ||||||||||||||||||||| |||| ||||||||||||
Sbjct 689 ATCGTCACGCCGAGTGCTTATATCTCAGCCGCAACACTAGTCATCCACTTAATCCTCTCT 748
Query 661 TGGCTCTCTGTCTTTAAGTTTGGTTGGGGCTTACTTGGTCTCTCCGTTGTTCACAGTCTC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 749 TGGCTCTCTGTCTTTAAGTTTGGTTGGGGCTTACTTGGTCTCTCCGTTGTTCATAGTCTC 808
Query 721 TCGTGGTGGATCATTGTCCTCGCTCAGATTATTTACATTAAGATAAGTCCAAGATGTCGC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 809 TCGTGGTGGATCATTGTCCTCGCTCAGATTATTTACATTAAGATAAGTCCAAGATGTCGC 868
Query 781 CGGACTTGGGATGGTTTTAGCTGGAAAGCTTTTGATGGTCTTTGGGACTTTATCCAGTTA 840
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 869 CGGACTTGGGATGGTTTTAGTTGGAAAGCTTTTGATGGTCTTTGGGACTTTTTCCAGTTA 928
Query 841 TCGGCAGCTTCCGCCGTCATGCTCTGTCTTGAATCTTGGTATTCTCAGATTCTTGTTCTC 900
|| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 929 TCCGCAGCTTCCGCCGTCATGCTCTGCCTTGAATCTTGGTACTCTCAGATTCTTGTTCTC 988
Query 901 CTCGCCGGACTTCTTAAAGACCCTGAACTTGCTTTGGATTCTCTAGCAATCTGCATGTCA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 989 CTCGCCGGACTTCTTAAAGACCCTGAACTTGCTTTGGATTCTCTAGCAATCTGCATGTCA 1048
Query 961 ATATCTGCAATGTCGTTCATGGTGTCAGTTGGATTCAACGCAGCTGCCAGTGTGAGAGTT 1020
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1049 ATCTCTGCAATGTCGTTCATGGTGTCAGTTGGATTCAACGCAGCTGCCAGTGTGAGAGTT 1108
Query 1021 AGTAACGAATTAGGTGCTGGAAATCCAAGATCAGCAGCATTTTCAACCGCAGTAACTACA 1080
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1109 AGTAACGAATTAGGTGCTGGAAATCCAAGATCAGCAGCATTTTCAACCGCGGTAACTACA 1168
Query 1081 GGAGTGTCATTTTTACTGTCATTGTTTGAAGCCATCGTGATCCTTTCGTGGCGTCACGTC 1140
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 1169 GGAGTGTCATTTTTACTGTCATTGTTTGAAGCCATCGTGATCCTCTCGTGGCGACATGTC 1228
Query 1141 ATCAGTTATATTTTTACGGACAGTCCAGCGGTTGCGGAAGCTGTCTCCGAGCTCTCTCCT 1200
|||||||| ||||||||||| |||||||||||||||||||| ||| ||||||||||||||
Sbjct 1229 ATCAGTTACATTTTTACGGATAGTCCAGCGGTTGCGGAAGCCGTCGCCGAGCTCTCTCCT 1288
Query 1201 TTCTTAGCCATTACCATAGTTCTCAATGGAGTTCAACCTGTTTTATCTGGTGTGGCCGTT 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1289 TTCTTAGCCATTACCATAGTTCTCAATGGAGTTCAACCTGTTTTATCTGGTGTGGCCGTT 1348
Query 1261 GGATGTGGATGGCAAGCATATGTAGCGTACGTTAACATTGGATGTTATTACATCGTGGGG 1320
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1349 GGATGTGGATGGCAAGCATATGTAGCTTACGTTAACATTGGATGTTATTACATTGTGGGG 1408
Query 1321 ATTCCGATTGGTTATGTTCTTGGTTTCACCTATGATATGGGAGCTAGGGGAATATGGACA 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1409 ATTCCGATTGGTTATGTTCTTGGTTTCACCTATGATATGGGAGCTAGGGGAATATGGACA 1468
Query 1381 GGGATGATTGGTGGTACACTCATGCAAACTATTATCTTAGTTATTGTCACTTTCCGAACT 1440
|||||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 1469 GGGATGATTGGTGGCACACTCATGCAAACTATTATCTTGGTCATTGTCACATTCCGAACC 1528
Query 1441 GATTGGGATAAAGAGGTGGAGAAGGCTTCGAGACGATTGGACCAGTGGGAAGACACATCT 1500
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1529 GATTGGGATAAAGAGGTGGAGAAGGCTTCGAGACGATTGGACCAGTGGGAGGACACATCT 1588
Query 1501 CCGCTTCTTAAGCAATAAAATAAATAA 1527
|||||||||||||||||||||||||||
Sbjct 1589 CCGCTTCTTAAGCAATAAAATAAATAA 1615
Score = 130 bits (70), Expect = 5e-29
Identities = 86/93 (92%), Gaps = 3/93 (3%)
Strand=Plus/Plus
Query 1575 TAGTTAGTTAATCAAGAGATATGCGAATCTCTTGATTAATGAAAAATTGGAAAATCGATA 1634
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1726 TAGTTAGTTATTCAAGAGATATGCGAATCTCTTGATTAATGAA---TTGGAAAATCGATT 1782
Query 1635 GTTTTCTGAGGGGTTTAGATTGAAGAGAAGGAT 1667
||||||||||||| ||||| |||||||||||||
Sbjct 1783 GTTTTCTGAGGGGGTTAGAGTGAAGAGAAGGAT 1815
Score = 86.1 bits (46), Expect = 1e-15
Identities = 58/63 (92%), Gaps = 4/63 (6%)
Strand=Plus/Plus
Query 1699 TTGTTGTAATCGTTTCTTTGTATATGAAGT-AATCAGATAATGAAAAATGGGTGTTATGG 1757
|||||||||||||||| ||| |||||| | |||||||||||||||||||||||||||||
Sbjct 1905 TTGTTGTAATCGTTTC-TTG--TATGAAATAAATCAGATAATGAAAAATGGGTGTTATGG 1961
Query 1758 TCC 1760
|||
Sbjct 1962 TCC 1964
Score = 76.8 bits (41), Expect = 6e-13
Identities = 50/54 (93%), Gaps = 2/54 (4%)
Strand=Plus/Plus
Query 1654 TTG-AAGAGAAGGATATTGAGAAGTGAGAATGATATATTGAAAAAATTGTTGTA 1706
||| ||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1834 TTGTAAGAGAA-AATATTGAGAAGTGAGAATGATATATTGAAAAAAATGTTGTA 1886
Score = 56.5 bits (30), Expect = 8e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 1546 TTTTGGTTTTCCCCAAAATGATTTTTAAAT 1575
||||||||||||||||||||||||||||||
Sbjct 1685 TTTTGGTTTTCCCCAAAATGATTTTTAAAT 1714
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87047745030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5