BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471331
Length=1521
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11860.1 | Symbols: | Glycine cleavage T-protein family | c... 2464 0.0
> AT1G11860.1 | Symbols: | Glycine cleavage T-protein family |
chr1:4001280-4003442 FORWARD LENGTH=1600
Length=1600
Score = 2464 bits (1334), Expect = 0.0
Identities = 1466/1529 (96%), Gaps = 12/1529 (1%)
Strand=Plus/Plus
Query 1 CCTAAATATAAATATATAAAGTCCCTTTTGCCATTGATAGCAACAAAATCATCAATTAAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 33 CCTAAATATAAATATATAAAGTCCCTTTTGCCATTGATAGCAACAAAATCATCAATTAAT 92
Query 61 TTGC-A-ATAacacacacacac-acTACATAGTAGTATCAGGAATCTGGGAAGAAGCTCC 117
|||| | ||||||||||| || ||||||||||||| | |||||||||||||||||||||
Sbjct 93 TTGCAATATAACACACACTTACTACTACATAGTAGTTTGAGGAATCTGGGAAGAAGCTCC 152
Query 118 AGTGGCAAAGACTCAAGATTT---ATGAGAGGTGGGAGTCTATGGCAGCTAGGGCAATCT 174
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 153 AGTGGCAAAGACTCAACATTTAAGATGAGAGGTGGGAGTCTATGGCAGCTAGGGCAATCA 212
Query 175 ATAACTCGTCGTCTTGCTCAATCTGACAAGAAGGGTGTGTCACGCCGCTACTTTGCCTCT 234
||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 213 ATAACCCGTCGTCTTGCTCAATCTGACAAGAAGGTTGTGTCACGTCGCTACTTTGCCTCT 272
Query 235 GAAGCTGACCTGaaaaaaaCCGCCCTTTACGACTTCCATGTCGCCCATGGAGGAAAGATG 294
||||||||||||||||| || || ||||||||||||||||| ||||||||||||||||||
Sbjct 273 GAAGCTGACCTGAAAAAGACTGCTCTTTACGACTTCCATGTTGCCCATGGAGGAAAGATG 332
Query 295 GTTCCTTTTGCTGGTTGGAGTATGCCAATTCAGTACAAAGATTCGATTATGGACTCAACG 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 GTTCCTTTTGCTGGTTGGAGTATGCCAATTCAGTACAAAGATTCGATTATGGACTCAACG 392
Query 355 GTTAACTGCAGGCAAAATGGGAGTTTGTTTGATGTTGCACATATGTGTGGTTTGAGCCTT 414
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 GTTAACTGCAGGGAAAATGGGAGTTTGTTTGATGTTGCACATATGTGTGGTTTGAGCCTT 452
Query 415 AAGGGTAAAGATTGTGTTCCTTTTCTTGAGACACTTGTGGTTGCTGATGTGGCTGGTTTG 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 AAGGGTAAAGATTGTGTTCCTTTTCTTGAGACACTTGTGGTTGCTGATGTGGCTGGTTTG 512
Query 475 GCTCCTGGAACTGGGAGCTTAACTGTGTTTACAAATGAGAAAGGAGGTGCCATTGATGAC 534
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 513 GCTCCTGGAACTGGGAGCTTAACTGTGTTCACAAACGAGAAAGGAGGTGCCATTGATGAC 572
Query 535 TCGGTGATTACCAAAGTGACAGATGAACATATCTATTTGGTGGTCAATGCTGGTTGTAGG 594
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 573 TCGGTGATTACCAAAGTGACAGATGAACATATCTATTTGGTGGTCAATGCTGGCTGTAGG 632
Query 595 GATAAGGATTTGGCTCACATTGAAGAACACATGAAGGCTTTCAAGTCCAAAGGAGGTGAT 654
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 633 GATAAGGATTTGGCTCACATTGAAGAACACATGAAGGCTTTCAAATCCAAAGGAGGTGAT 692
Query 655 GTCTCCTGGCATATCCATGATGAGAGATCTCTTCTCGCCCTTCAGGGTCCTTTGGCTGCT 714
||||| ||||||||||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct 693 GTCTCGTGGCATATCCACGACGAGAGATCTCTTCTTGCCCTTCAGGGTCCTTTGGCTGCT 752
Query 715 CCAGTGCTTCAACACCTGACTAAAGAAGACTTGAGCAAGCTTTACTTTGGGCAGTT-CCA 773
|||||||||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 753 CCAGTGCTTCAACACCTGACTAAAGAAGACTTGAGCAAGCTTTACTTTGG-CAATTTCCA 811
Query 774 GATTCTGGACATAAATGGTTCCACATGTTTTCTTACCAGGACCGGGTATACCGGGGAAGA 833
|||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 812 GATTCTGGACATTAATGGTTCCACATGTTTCCTTACCAGGACTGGGTATACCGGGGAAGA 871
Query 834 TGGGTTTGAGATCTCAGTTCCAGATGAGCACGCAGTGGATCTAGCAAAAGCAATCTTGGA 893
|||||||||||| || |||||||||||||| || ||||||||||||||||||||||||||
Sbjct 872 TGGGTTTGAGATTTCGGTTCCAGATGAGCATGCTGTGGATCTAGCAAAAGCAATCTTGGA 931
Query 894 GAAATCCGAGGGTAAGGTAAGGCTTACAGGTCTAGGTGCAAGAGACAGTCTCAGGTTAGA 953
||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 932 GAAGTCCGAGGGTAAGGTAAGGCTTACGGGTCTAGGAGCAAGAGACAGTCTCAGGTTAGA 991
Query 954 AGCAGGACTTTGTCTATATGGAAACGACATGGAGCAACACATTTCTCCTGTTGAAGCTGG 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 AGCAGGACTTTGTCTATATGGAAACGACATGGAGCAACACATTTCTCCTGTTGAAGCTGG 1051
Query 1014 GCTCACATGGGCCATAGGGAAGCGTAGAAGAGCCGAAGGTGGGTTTCTTGGCGCGGATGT 1073
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1052 GCTCACATGGGCCATAGGGAAGCGTAGAAGAGCCGAAGGTGGATTTCTTGGCGCGGATGT 1111
Query 1074 GATTCTCCAACAGCTTAAAGATGGACCTACAATCAGAAGGGTCGGTTTTTTCTCCTCAGG 1133
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1112 GATTCTCCAGCAGCTTAAAGATGGACCTACAATCAGAAGGGTCGGTTTCTTCTCCTCAGG 1171
Query 1134 ACCACCCGCAAGGTCGCACAGTGAGGTTCATGATGAGAGTGGGAACAAGATTGGAGAGAT 1193
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1172 ACCACCCGCAAGGTCGCATAGCGAGGTTCATGATGAGAGTGGGAACAAGATTGGAGAGAT 1231
Query 1194 CACAAGTGGAGGGTTTAGCCCGAACCTGAAGAAGAACATAGCCATGGGGTATGTGAAGTC 1253
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1232 CACAAGTGGAGGGTTTAGCCCGAACCTGAAGAAGAACATAGCCATGGGATATGTGAAGTC 1291
Query 1254 AGGTCAGCACAAGACAGGGACTAAAGTCAAGATCTTGGTCCGTGGGAAACCGTATGAAGG 1313
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1292 AGGTCAGCACAAGACTGGGACTAAAGTCAAGATCTTGGTCCGTGGGAAACCATATGAAGG 1351
Query 1314 CAGCATCACGAAGATGCCGTTCGTGGCCACCAAATACTACAAGCCAACATGATATGTGTG 1373
|||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1352 CAGCATCACGAAGATGCCATTCGTGGCCACCAAATACTACAAACCAACATGAAATGTGTG 1411
Query 1374 TCTTCTTCGTCCATTTACTC-GTCTCTTGTTTTTGTTAAAATGACTTGTGTTTTTCTTCT 1432
||| |||||||||| ||| |||||||| || ||||||| |||||||||||||||||||
Sbjct 1412 TCTCCTTCGTCCATG-ACTTTGTCTCTTGCTTCTGTTAAA-TGACTTGTGTTTTTCTTCT 1469
Query 1433 GTTCTGATTTGGCCTGAAAAATGTACGATATTTTGCCAAGAGGGCATTGCTTATTTTCAT 1492
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1470 GTTCTGTTTTGGCCTGAAAAATGTACGATATTTTGCCAAGAGGGCATTGCTTATTT-CAT 1528
Query 1493 TTATATTGAAATAAATTTAACACATGTAA 1521
|| ||||||||||||||||||||||||||
Sbjct 1529 TTTTATTGAAATAAATTTAACACATGTAA 1557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75049814775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5