BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471340
Length=1856
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11910.1 | Symbols: APA1, ATAPA1 | aspartic proteinase A1 | ... 2878 0.0
AT1G62290.1 | Symbols: | Saposin-like aspartyl protease family... 1219 0.0
> AT1G11910.1 | Symbols: APA1, ATAPA1 | aspartic proteinase A1
| chr1:4016784-4020983 REVERSE LENGTH=1970
Length=1970
Score = 2878 bits (1558), Expect = 0.0
Identities = 1743/1832 (95%), Gaps = 14/1832 (1%)
Strand=Plus/Plus
Query 1 ATCTCTCCTCACAGTGATCTCTTTCTTCCCAAATAAATGTAAACTATCTCTCGTCTCGTT 60
||| ||||||||||| |||||||||||| ||||||||||| ||| ||||||| |||||||
Sbjct 1 ATCCCTCCTCACAGTCATCTCTTTCTTCGCAAATAAATGT-AACCATCTCTCTTCTCGTT 59
Query 61 TTCTTC--C-ACAATCCTCATTTCTCTGAGAATCTGGTGC-TTAGCTTTTGTAAAATGAA 116
|||||| | | |||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 60 TTCTTCAACAAAAATCCTCATTTCTCTGAGAATCTGGTGCTTTAGCTTTGGTAAAATGAA 119
Query 117 GATTTACTCTACAACGGTTGCTGTTGCACTCATTGTGTCATTCCTACTGTTTTTCTCTGC 176
||| ||||||| ||||||||||||| ||||||||||||||||||| |||| |||||||||
Sbjct 120 GATATACTCTAGAACGGTTGCTGTTTCACTCATTGTGTCATTCCTCCTGTGTTTCTCTGC 179
Query 177 CTTTTCTGAGCGCAATGACGGGACCTTCAGAGTTGGCCTCAAAAAACTCAAGTTGGATTC 236
|||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 180 CTTTGCTGAGCGCAATGACGGGACCTTCAGAGTTGGACTGAAAAAACTCAAGTTGGATTC 239
Query 237 CAAAAACCGGCTTGCAGCACGCGTCGAATCCAGGCAAGATAAGCCCCTGAGAGCTTACAG 296
||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 240 GAAAAATCGGCTTGCAGCACGCGTCGAATCCAAGCAAGAAAAGCCCCTGAGAGCTTACAG 299
Query 297 CCTTGGAAATTCTGAAGATGCTGATGTTGTCGTGCTTAAGAATTATCTAGATGCTCAGTA 356
|||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 ACTTGGAGATTCTGGAGATGCTGATGTTGTTGTGCTTAAGAATTATCTAGATGCTCAGTA 359
Query 357 CTACGGTGAGATCGCTATTGGTACTCCACCTCAGAAGTTCACTGTGGTTTTTGACACTGG 416
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CTATGGTGAGATCGCCATTGGTACTCCACCTCAGAAGTTCACTGTGGTTTTTGACACTGG 419
Query 417 GAGCTCTAACCTCTGGGTGCCATCATCAAAATGCTATTTCTCGCTTGCATGTCTCTTGCA 476
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 420 GAGCTCTAACCTCTGGGTGCCATCATCAAAATGCTATTTCTCACTTGCATGTCTCTTGCA 479
Query 477 TCCCAAATACAAGTCTTCGCGTTCAAGCACATATGAGAAGAATGGAAAATCTGCCGCAAT 536
||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||
Sbjct 480 TCCCAAATACAAGTCGTCTCGTTCAAGCACATATGAGAAGAATGGAAAAGCTGCCGCAAT 539
Query 537 TCATTATGGCACTGGTGCAATTGCTGGTTTTTTCAGTAATGATGCCGTCACAGTTGGCGA 596
|||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 540 TCATTACGGCACTGGAGCAATTGCTGGTTTTTTTAGTAATGATGCTGTCACAGTTGGCGA 599
Query 597 TTTAGTTGTCAAGGATCAGGAATTTATTGAGGCAACCAAGGAGCCTGGTATAACATTTGT 656
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 600 TTTAGTTGTCAAGGATCAGGAGTTTATCGAGGCAACCAAGGAGCCTGGTATAACATTTGT 659
Query 657 TGTAGCTAAGTTTGATGGTATCCTTGGTCTTGGATTCCAAGAGATCTCTGTTGGAAATGC 716
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 660 TGTAGCTAAATTTGATGGTATCCTTGGTCTTGGATTCCAAGAGATCTCTGTTGGAAAAGC 719
Query 717 CGCTCCTCTTTGGTACAACATGCTCAAGCAAGGCCTTATCAAGGAGCCAGTTTTTTCATT 776
|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 720 TGCTCCTGTTTGGTACAACATGCTCAAGCAAGGCCTTATCAAGGAGCCGGTTTTTTCATT 779
Query 777 TTGGCTTAACCGTAATGCAGATGAAGAAGAAGGTGGTGAACTTGTATTTGGAGGTGTTGA 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TTGGCTTAACCGTAATGCAGATGAAGAAGAAGGTGGTGAACTTGTATTTGGAGGTGTTGA 839
Query 837 TCCAAATCATTTCAAGGGCAAACATACATATGTTCCTGTGACACAAAAAGGCTACTGGCA 896
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 840 TCCAAATCATTTCAAGGGCAAACATACATATGTTCCTGTGACACAAAAGGGCTACTGGCA 899
Query 897 GTTTGACATGGGTGATGTCCTTATTGGCGGTGCACCCACTGGGTTCTGTGAAAGTGGCTG 956
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GTTTGACATGGGTGATGTTCTTATTGGCGGTGCACCCACTGGGTTCTGTGAAAGTGGCTG 959
Query 957 TTCTGCGATAGCAGATTCTGGTACATCTTTGCTTGCAGGTCCAACGACTATTATCACCAT 1016
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 960 TTCTGCGATAGCAGATTCTGGTACATCTTTGCTTGCCGGTCCAACGACTATAATCACCAT 1019
Query 1017 GATAAACCATGCTATTGGAGCAGCTGGAGTTGTTAGCCAGCAGTGCAAGACTGTCGTGGA 1076
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1020 GATAAACCATGCTATTGGAGCAGCTGGAGTTGTTAGCCAGCAGTGCAAGACTGTTGTGGA 1079
Query 1077 TCAATACGGGCAGACTATTTTAGATTTACTTTTGTCTGAGACCCAACCAAAGAAAATCTG 1136
||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1080 TCAATACGGGCAGACCATTTTGGATTTACTTTTGTCTGAGACCCAACCGAAGAAAATCTG 1139
Query 1137 CTCGCAGATTGGTCTGTGTACTTTTGATGGTACCCGTGGTGTCAGTATGGGCATTCAGTC 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1140 CTCGCAGATTGGTCTGTGTACTTTTGATGGTACCCGTGGTGTCAGTATGGGCATTGAGTC 1199
Query 1197 GGTGGTGGACAAGGAAAACGCCAAATTGTCTAATGGTGTTGGAGATGCTGCGTGCTCTGC 1256
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1200 GGTGGTGGACAAGGAAAACGCCAAATTGTCTAATGGTGTTGGAGATGCTGCGTGTTCTGC 1259
Query 1257 ATGTGAGATGGCAGTTGTGTGGATCCAGAGCCAGTTGAGGCAGAACATGACTGAAGAACG 1316
|||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||| ||
Sbjct 1260 ATGTGAGATGGCTGTTGTGTGGATCCAGAGCCAGTTGAGGCAAAACATGACTCAAGAGCG 1319
Query 1317 CATATTGAACTACGTCAACGAGCTATGTGAACGCCTTCCCAGCCCAATGGGAGAGTCTGC 1376
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1320 CATATTGAACTACGTCAACGAGCTATGTGAACGCCTCCCCAGCCCAATGGGAGAGTCTGC 1379
Query 1377 AGTTGACTGTGCTCAACTCTCAACAATGCCCACTGTTTCA-TTCACCATTGGAGGCAAAG 1435
|||||||||||| ||||| ||||||||||||||||||||| || ||||||||||||||||
Sbjct 1380 AGTTGACTGTGCACAACTGTCAACAATGCCCACTGTTTCACTT-ACCATTGGAGGCAAAG 1438
Query 1436 TATTTGATCTTGCTCCAGAAGAGTATGTTCTGAAAGTTGGTGAGGGACCTGTGGCACAGT 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 TATTTGATCTTGCTCCAGAAGAGTATGTTCTGAAAGTTGGTGAGGGACCTGTGGCACAGT 1498
Query 1496 GCATCAGTGGCTTTATTGCTCTCGATGTCGCTCCACCTCGTGGACCTCTCTGGATCTTGG 1555
|||||||||| ||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 1499 GCATCAGTGGTTTTATTGCTCTTGACGTTGCTCCACCTCGTGGACCTCTCTGGATCTTGG 1558
Query 1556 GAGATGTGTTCATGGGCAAATACCACACCGTGTTCGACTTCGGTAACGAACAGGTCGGAT 1615
||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |
Sbjct 1559 GAGATGTGTTCATGGGCAAATACCACACCGTATTTGACTTTGGTAACGAACAGGTCGGGT 1618
Query 1616 TTGCAGAGGCAGCGTAAACACGGTCGGGTTGGTTTCGCGTATGGTTTTAGTATGAACAAT 1675
||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1619 TTGCAGAGGCAGCCTAAACACGATCGGGTTGGTGTCGCGTATGGTTTTAGTATGAACAAT 1678
Query 1676 CTGTGTCTCAAGTGTTGTTTGTATGTTTTCTGGAGTTGAAGACTTTGAGTCGTAGTAGAA 1735
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1679 CTGCGTCTCAAGTGTTGTTTGTATGTTTTCTGGAGTTGAGGACTTTGAGTCGTAGTAGAA 1738
Query 1736 ATGGTGGCACAGCTACTTTTATCCTTTTATGGTTTCCTAACGAAAAAATGGCCTTTGTAG 1795
|||||||| ||| | |||||| || | |||||||||||||||| |||||||||||
Sbjct 1739 ATGGTGGCGCAGTTCCTTTTAAG-TT----G-TTTCCTAACGAAAAAA-GGCCTTTGTAG 1791
Query 1796 TTTTGAAGGCATTGGCTTTGTAAATACCTTCT 1827
||||||||||||||||||||||||||||||||
Sbjct 1792 TTTTGAAGGCATTGGCTTTGTAAATACCTTCT 1823
> AT1G62290.1 | Symbols: | Saposin-like aspartyl protease family
protein | chr1:23009911-23013492 REVERSE LENGTH=1821
Length=1821
Score = 1219 bits (660), Expect = 0.0
Identities = 1265/1549 (82%), Gaps = 73/1549 (5%)
Strand=Plus/Plus
Query 121 TACTCTACAACGGTTGCTG-TTGCACTCATTGTGTCATTCCTACTGTTTTTCTCTGCCTT 179
||||| | | ||||||| | || | || ||||||| || || ||||||||| ||| |||
Sbjct 93 TACTCGAGAGCGGTTGC-GTTTTCGGTCTTTGTGTCGTTTCTGCTGTTTTTCACTG-CTT 150
Query 180 -TTCTGAGCGCAATGACGGGACCTTCAGAGTTGGCCTCAAAAAACTCAAGTTGGATTCC- 237
|||| || | ||||| || || |||||||||||||| |||||||| |||||||| |||
Sbjct 151 ATTCTAAGAGAAATGATGGAACATTCAGAGTTGGCCTGAAAAAACTGAAGTTGGA-TCCT 209
Query 238 AAAAACCGGCTTGCAGCACGCGTCGAATCCAGGCAAGATA-AGCCCCTGAGA-------- 288
|| ||||| || ||| ||||| | | |||| |||||| | || || |||||
Sbjct 210 AACAACCGACTCGCAACACGCTTTGGTTCCAAGCAAGA-AGAGGCCTTGAGATCTTCTTT 268
Query 289 GC--T--T---ACAGC---C-T--TGGAAATTCTGAAGATGCTGATGTTGTCGTGCTTAA 335
|| | | ||| | | | ||| |||||| |||||||||| ||||| ||| ||
Sbjct 269 GCGTTCGTACAACAACAATCTTGGTGGTGATTCTGGAGATGCTGATATTGTCCCGCTCAA 328
Query 336 GAATTATC-TAGATGCTCAGTACTACGGTGAGATCGCTATTGGTACTCCACCTCAGAAGT 394
|||||| | | |||||||||||||| |||||||| ||||||||||||||||| |||||||
Sbjct 329 GAATTA-CTTGGATGCTCAGTACTATGGTGAGATTGCTATTGGTACTCCACCGCAGAAGT 387
Query 395 TCACTGTGGTTTTTGACACTGGGAGCTCTAACCTCTGGGTGCCATCATCAAAATGCTATT 454
||||||| ||||||| || || ||||||||||| |||||||||||| |||||| | ||
Sbjct 388 TCACTGTCATTTTTGATACCGGAAGCTCTAACCTTTGGGTGCCATCAGGAAAATGTTTTT 447
Query 455 TCTCGCTTG-CATGTCT-CTTGCATCCCAAATACAAGTCTTCGCGTTCAAGCACATATGA 512
|||||| || | ||| | ||| ||| | || |||||||| ||||| |||||||||||| |
Sbjct 448 TCTCGC-TGTCTTGT-TACTTTCATGCTAAGTACAAGTCCTCGCGATCAAGCACATATAA 505
Query 513 GAAGAATGGAAAATC-TGCCGCAATTCATTATGGCACTGG-TGCAAT-TGCTGGTTT-TT 568
||||| ||||||| | ||||||||| ||||| ||| | || | |||| | ||||||| ||
Sbjct 506 GAAGAGTGGAAAA-CGTGCCGCAATCCATTACGGCTCAGGAT-CAATCT-CTGGTTTCTT 562
Query 569 TCAGTAATGATGCCGTCACAGTTGGCGATTTAGTTGTCAAGGATCAGGAATTTATTGAGG 628
| ||| ||||||| ||||| ||||| ||||| |||||||| |||||||| |||||||||
Sbjct 563 T-AGTTATGATGCTGTCACGGTTGGTGATTTGGTTGTCAAAGATCAGGAGTTTATTGAGA 621
Query 629 CAACCAAG-GAGCCTGGTATAACATTTGTTGTAGCTAAGTTTGATGGTATCCTTGGTCTT 687
||||| || ||||||||| ||||||| | || ||||||||||||||| | |||||||||
Sbjct 622 CAACC-AGTGAGCCTGGTTTAACATTCCTGGTGGCTAAGTTTGATGGTCTTCTTGGTCTT 680
Query 688 GGATTCCAAGAGATCTCTGTTGGAAATGCCGCTCCTCTTTGGTACAACATGCTCAAGCAA 747
|| |||||||||||| |||||||||| || ||||| |||||||||| ||||||||||||
Sbjct 681 GGGTTCCAAGAGATCGCTGTTGGAAACGCTACTCCTGTTTGGTACAATATGCTCAAGCAA 740
Query 748 GGCCTTATCAAGGA-GCCAGTTTTTTCATTTTGGCTTAACCGTAATGCAGATGA-AGAAG 805
|||||||| || || ||| || ||||||||||||||||||||| || || | || ||||
Sbjct 741 GGCCTTAT-AAAGAGGCCGGTCTTTTCATTTTGGCTTAACCGTGATCCA-AAGAGTGAAG 798
Query 806 AAGGTGGTGAACTTGTATTTGGAGGTGTTGATCCAAATCATTTCAAG-GGCA-AACATAC 863
|||| |||||| | ||||| ||||||||||||||||| ||||| || || | |||||||
Sbjct 799 AAGGCGGTGAAATCGTATTCGGAGGTGTTGATCCAAAGCATTT-TAGAGG-AGAACATAC 856
Query 864 ATATGTTCCTGTGACACAAAAAGGCTACTGGCAGTTTGACATGGGTGATGTCCTTATTGG 923
|| ||||||||||||||||| || ||||||||||| ||||||||||| || || ||||
Sbjct 857 ATTTGTTCCTGTGACACAAAGGGGTTACTGGCAGTTCGACATGGGTGAGGTTCTCATTGC 916
Query 924 CGGTGCACCCACTGGGT-TCTGTGAAAGTGGCTGTTCTGCGATAGCAGATTCTGGTACAT 982
||||| | | ||||| | | |||| |||||| ||||||||||||||||||||||| ||||
Sbjct 917 CGGTGAATCTACTGGATAT-TGTGGAAGTGGTTGTTCTGCGATAGCAGATTCTGGAACAT 975
Query 983 CTTTGCTTGCAGGTCCAACGACTATTATCACCATGATAAACCATGCTATTGGAGCAGCTG 1042
| || ||||| ||||||||| || | | |||||||||| | |||||||||||| |||
Sbjct 976 CGTTACTTGCGGGTCCAACGGCTGTGGTTGCCATGATAAATAAGGCTATTGGAGCATCTG 1035
Query 1043 GAGTTGTTAGCCAGCAGTGCAAGACTGTCGTGGATCAATACGGGCAGACTATTTTAGATT 1102
|||||||||||||||||||||||||||| || || || || || || || ||||| ||||
Sbjct 1036 GAGTTGTTAGCCAGCAGTGCAAGACTGTTGTTGACCAGTATGGACAAACCATTTTGGATT 1095
Query 1103 TACTTTTGTCTGAGACCCAACCAAAGAAAATCTGCTCGCAGATTGGTCTGTGTACTTTTG 1162
|||||||| ||||||| ||||||||||| || ||||| || |||||||| || ||| |
Sbjct 1096 TACTTTTGGCTGAGACTCAACCAAAGAAGATTTGCTCACAAATTGGTCTTTGCGCTTACG 1155
Query 1163 ATGGTACCCGTGGTGTCAGTATGGGCATTCAGTCGGTGGTGGACAAGGAAAACGCCAA-A 1221
|||| |||| ||| ||||||||||| ||| | ||||||||||||||||||||| | || |
Sbjct 1156 ATGGCACCCATGGGGTCAGTATGGGGATTGAATCGGTGGTGGACAAGGAAAACAC-AAGA 1214
Query 1222 TTGTCTAATGGTGTTGGAGATGCTGCGT-GCTC-TGCATGTGAGATGGCAGTTGTGTGGA 1279
| |||| |||| || |||| || | || | || ||||||||| ||||| ||||||||||
Sbjct 1215 TCATCTAGTGGTCTTCGAGACGCGG-GTTG-TCCTGCATGTGAAATGGCGGTTGTGTGGA 1272
Query 1280 TCCAGAGCCAGTTGAGGCAGAACATGACTGAAGA-ACGCATATTGAACTACGTCAACGAG 1338
| |||||||| |||||||||||||||||| |||| | | ||| |||||||| | || |||
Sbjct 1273 TACAGAGCCAATTGAGGCAGAACATGACTCAAGAGAGG-ATAGTGAACTACATTAATGAG 1331
Query 1339 CTATGTGAACGCCTTCCCAGCCCAA-TGGGAGAGTCTGCAGTTGACTG-TGCTCAACTCT 1396
|||| || ||| | || || |||| ||| ||||||||| |||||||| | | ||||| |
Sbjct 1332 ATATGCGAGCGCATGCCTAGTCCAAATGG-AGAGTCTGCTGTTGACTGCT-CACAACTTT 1389
Query 1397 C-AACAATGCCCACTGTTTCATTCACCATTGGAGGCAAAGTATTTGATCTTGCTCCAGAA 1455
| || |||||| ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1390 CTAA-AATGCCTACTGTTTCATTCACCATTGGAGGCAAAGTCTTTGATCTTGCTCCCGAA 1448
Query 1456 GAGTATGTTCTGAA-AGTTGGTGAGGGACCTGTGGCACAGTGCATCAGTGGCTTTATTGC 1514
||||| || ||||| | |||| || ||||| |||||||| || || || ||||||| ||
Sbjct 1449 GAGTACGTACTGAAGA-TTGGGGAAGGACCAGTGGCACAATGTATTAGCGGCTTTACCGC 1507
Query 1515 TCTCGATGTCGCTCCACCTCGTGGACCTCTCTGGAT-CTTGGGAGATGTGTTCATGGGCA 1573
|| ||| || ||||||||||||||||||||||||| ||||| ||||||||| ||||| |
Sbjct 1508 ACTTGATATCCCTCCACCTCGTGGACCTCTCTGGATACTTGG-AGATGTGTTTATGGGAA 1566
Query 1574 AATACCACACCGTGTTCGACTTCGGTAACGAACAGGTCGGATTTGCAGA 1622
|||||||||| || || |||||||| ||||| ||||| || || |||||
Sbjct 1567 AATACCACACTGTCTTTGACTTCGGAAACGAGCAGGTTGGCTTCGCAGA 1615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91866997350
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5