BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471359
Length=813
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12090.1 | Symbols: ELP | extensin-like protein | chr1:40898... 924 0.0
AT1G62510.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 250 2e-65
> AT1G12090.1 | Symbols: ELP | extensin-like protein | chr1:4089847-4090725
REVERSE LENGTH=879
Length=879
Score = 924 bits (500), Expect = 0.0
Identities = 639/701 (91%), Gaps = 29/701 (4%)
Strand=Plus/Plus
Query 1 ACGCTCTTGCGTTTTTCTTGAAACCACTATAAAACCCATCTCAATTCCCTTCACTTGCTC 60
||||||||| | |||||||||||||||||||||||| ||||||||| | |||| || |||
Sbjct 19 ACGCTCTTGGGCTTTTCTTGAAACCACTATAAAACCTATCTCAATT-CTTTCATTTTCTC 77
Query 61 CACACCCAATTCACTCATAA-C--G-TAGC---T----AG-A-TGGC--T-T--CAAGAA 102
||||||||||||||||| || | | |||| | || | | | | | ||| ||
Sbjct 78 CACACCCAATTCACTCACAACCTAGCTAGCTAGTAAACAGTATTTTCTATATACCAAAAA 137
Query 103 ---CCACAAGCTCCATAGCCCTTTTCTTGGCTCTCAATCTCCtttttttCACAACAATCT 159
| |||| |||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct 138 TGGCTTCAAGTTCCATAGCTCTTTTCTTGGCTCTCAATCTTCTCTTTTTCACAACAATCT 197
Query 160 CCGCCTGTGGTAGCTGCACTCCGTGCGGTGGAGGTTGCCCCTCTCCCAAGCCAAAGCCAA 219
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 198 CCGCCTGTGGTAGCTGTACTCCGTGCGGCGGAGGTTGCCCCTCTCCCAAGCCAAAGCCAA 257
Query 220 CTCCTAAACCGACCCCAAGCCCTAGCTCTGGCTCGAGCAAGTGCCCTAAAGACACCCTCA 279
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 258 CTCCTAAACCAACCCCAAGCCCTAGCTCTGGCTCGAGCAAGTGCCCTAAAGACACCCTCA 317
Query 280 AGCTCGGTGTCTGCGCTAATGTGCTCAACGGGCTCCTCGACTTGACCCTTGGCAAGCCAC 339
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 318 AGCTCGGTGTCTGCGCTAATGTGCTCAACGGCCTCCTGGACTTGACCCTTGGCAAGCCAC 377
Query 340 CGGTCGAGCCATGCTGCAGCCTCATCCAAGGACTCGCTGATGTTGAAGCAGCCGTTTGTC 399
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 378 CGGTCGAGCCATGCTGCAGCCTCATCCAAGGACTCGCTGATGTTGAGGCAGCCGTTTGTC 437
Query 400 TCTGCACCGCCCTTAAGGCTAACATTCTTGGAATCAACTTAAACCTCCCAATCTCTCTAA 459
|||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| |||
Sbjct 438 TCTGCACCGCTCTTAAGGCTAACATTCTTGGAATCAACTTGAACCTCCCAATATCTTTAA 497
Query 460 GTCTGCTCCTCAATGTTTGCAGCAAACAACTTCCTCCTGGCTTCCAATGCTAATAACCAT 519
|||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 498 GTCTACTCCTTAATGTTTGCAGCAAACAACTTCCTCCTGGCTTCCAATGCTAAAAACCAT 557
Query 520 ATTGATATATAATTTAAATACACTTATGTGT--AT-A-TTTATCTTCTTGTTTTAAAGAG 575
||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||
Sbjct 558 ATTGATATATAATTTAAATACACTTATGTGTGTATTAATTTATCTTCTTGTTTTAAAGAG 617
Query 576 ACAAGGTGATTCT--ATACTCTTATTATTGTGTCTTTATATATCTTGATCTGTGGTTTCT 633
||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 618 ACAGGGTGATTCTCTATACTCTTAT-ATTGTGTCTTTATATATCTTGATCTGTGGTTTCT 676
Query 634 TCTAGTCTTCTTGCTCTGGTGTTCATTGGAGTGATCCGTAA 674
|||| ||| |||||||||||||||||||| |||||||||||
Sbjct 677 TCTACTCTGCTTGCTCTGGTGTTCATTGGGGTGATCCGTAA 717
Score = 135 bits (73), Expect = 5e-31
Identities = 124/146 (85%), Gaps = 13/146 (9%)
Strand=Plus/Plus
Query 668 TCCGTAATATATATACTCTTACCATTGGGGGTATTGCTGTATTGATTTGTAACTTTGTAT 727
||| || ||||||||||||||||||||||||||||| ||||||| | |||||||
Sbjct 746 TCC-TATTATATATACTCTTACCATTGGGGGTATTGTTGTATTG----G----TTTGTAT 796
Query 728 TATGATTCTATGAATTAATAAGAATTTAATTTTTATGTTGTGGACTCAATATATATTTTA 787
||||||||||||||||||||||||||||| ||||||||| |||| ||| ||| |||
Sbjct 797 TATGATTCTATGAATTAATAAGAATTTAACTTTTATGTTATGGATTCATTAT-TATAC-- 853
Query 788 GTGAATATTATGTTTTATGGTTTATA 813
| ||||||| ||||||||||||||||
Sbjct 854 G-GAATATTGTGTTTTATGGTTTATA 878
> AT1G62510.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr1:23136369-23137191
REVERSE LENGTH=823
Length=823
Score = 250 bits (135), Expect = 2e-65
Identities = 269/332 (81%), Gaps = 16/332 (5%)
Strand=Plus/Plus
Query 196 GCCCCTCTCCCAAGCCAAAGCC-AACTCCTAAA-CC--G---AC-CC-CA----AGCCCT 242
||||||||||||||||||| || ||| |||||| || | || || || || |||
Sbjct 232 GCCCCTCTCCCAAGCCAAAACCTAAC-CCTAAACCCAAGCCAACACCACACCCTAGTCCT 290
Query 243 AGCTCTGGCTCGAG-CAAGTGCCCTAAAGACACCCTCAAGCTCGGTGTCTGCGCTAATGT 301
||| | ||| || ||| ||||||| |||| |||| ||||| || || ||||| || ||
Sbjct 291 AGC-CCGGCAATAGCCAAATGCCCTAGAGACGCCCTTAAGCTAGGAGTTTGCGCCAACGT 349
Query 302 GCTCAACGGGCTCCTCGACTTGACCCTTGGCAAGCCACCGGTCGAGCCATGCTGCAGCCT 361
|||||||| || || || | ||||||||||||||||||||||||||||| |||| |||
Sbjct 350 ACTCAACGGCCTACTAAACGTAACCCTTGGCAAGCCACCGGTCGAGCCATGTTGCACCCT 409
Query 362 CATCCAAGGACTCGCTGATGTTGAAGCAGCCGTTTGTCTCTGCACCGCCCTTAAGGCTAA 421
||||||||||||||||||| |||| || || | |||||| ||||| || || ||||||||
Sbjct 410 CATCCAAGGACTCGCTGATCTTGAGGCTGCAGCTTGTCTTTGCACTGCGCTCAAGGCTAA 469
Query 422 CATTCTTGGAATCAACTTAAACCTCCCAATCTCTCTAAGTCTGCTCCTCAATGTTTGCAG 481
||| || || |||||| | || ||||| ||||||| ||||| || ||||||||||||||
Sbjct 470 CATCCTCGGTATCAACCTGAATATCCCACTCTCTCTCAGTCTTCTTCTCAATGTTTGCAG 529
Query 482 CAAACAACTTCCTCCTGGCTTCCAATGCTAAT 513
|||| || |||||| |||||||||||||||||
Sbjct 530 CAAAAAAGTTCCTCGTGGCTTCCAATGCTAAT 561
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39584507836
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5