BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471385 Length=1679 Score E Sequences producing significant alignments: (Bits) Value AT1G12370.2 | Symbols: PHR1, UVR2 | photolyase 1 | chr1:4206374... 2673 0.0 > AT1G12370.2 | Symbols: PHR1, UVR2 | photolyase 1 | chr1:4206374-4208951 REVERSE LENGTH=1726 Length=1726 Score = 2673 bits (1447), Expect = 0.0 Identities = 1602/1679 (95%), Gaps = 1/1679 (0%) Strand=Plus/Plus Query 1 ATCGCGCGCTTTGTCGCTTGAGCATCCCCTGCGCAAGTTATCCTCCTCCGCTGTCGTATA 60 |||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||| Sbjct 1 ATCGCGCGCTTTGTCGCTTGAGCATCCCCTGCGCAAATTATCCTCCTCCGCCGTCGCATA 60 Query 61 AACGGCGCACATTAGTGAAAATCCGAAAAATCCGTCTCTCCTCCTTCGTAATGGCGACGG 120 | ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| || Sbjct 61 ACCGGCGCACATTAGTG-AAATCGGAAAAATCCGTCTCTCCTCCTTCGTAATGGCGTCGA 119 Query 121 CAATCTCCGTTCAAACGGGTCGGATCCGGATCCTAAAGAAAGGCTCATGGCAACCGTCGG 180 || |||| |||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct 120 CAGTCTCAGTTCAACCGGGTCGGATCCGGATCCTAAAGAAAGGCTCATGGCAACCGTTGG 179 Query 181 ATCAAACGGTGGGTCCCGTCGTTTACTGGATGTTCAGAGATCAACGGTTGAAAGACAACT 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 180 ATCAAACGGTGGGTCCCGTCGTTTACTGGATGTTCAGAGATCAACGGTTGAAAGATAACT 239 Query 241 GGGCGTTAATCCATGCCGTTGATCTTGCAAACAGAACCAACGCGCCGGTGGCCGTCGTGT 300 ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 240 GGGCGTTAATCCACGCCGTTGATCTGGCAAACAGAACCAACGCGCCGGTGGCCGTCGTTT 299 Query 301 TCAATCTGTTCGATCAGTTTCTGGACGCAAAAGCGAGGCAATTAGGGTTTATGTTAAAGG 360 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 TCAATCTGTTCGATCAATTTCTGGACGCAAAAGCGAGGCAATTAGGGTTTATGTTAAAGG 359 Query 361 GTTTGCGCCAGCTTCACCACCAAATCGATTCTCTTCAAATTCCGTTTTTTCTCTTACAGG 420 ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 360 GTTTGCGTCAGCTTCACCACCAAATCGATTCTCTCCAAATTCCGTTTTTTCTCTTACAGG 419 Query 421 GAGATGCAAAGGAGACAATTCCTAATTTCCTCACAGAATGTGGAGCTTCACATCTGGTTA 480 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 420 GAGATGCAAAGGAGACAATCCCTAATTTCCTCACAGAATGTGGAGCTTCACATCTGGTTA 479 Query 481 CTGATTTCTCGCCTTTACGGGAAATTCGGAGTTGTAAAGATGAGGTTGTGAAGAGGACGA 540 |||||||||| |||||||||||||| ||| ||||||||||||||||||| ||||| |||| Sbjct 480 CTGATTTCTCTCCTTTACGGGAAATCCGGCGTTGTAAAGATGAGGTTGTCAAGAGAACGA 539 Query 541 GTGATTCATTAGCAATTCATGAAGTTGATGCACACAATATAGTTCCAATGTGGGCTGCTT 600 ||||||||||||| || |||||||||||||| |||||| ||||||||||||||||||||| Sbjct 540 GTGATTCATTAGCGATACATGAAGTTGATGCTCACAATGTAGTTCCAATGTGGGCTGCTT 599 Query 601 CGGGTAAATTGGAGTACAGTGCTAGAACAATTAGGGGTAAGATCAACAAGCTACTACCTG 660 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 CGAGTAAATTGGAGTACAGTGCTAGAACAATTAGGGGTAAGATCAACAAGCTACTACCTG 659 Query 661 ATTACCTCATTGAGTTTCCTAAACTTGAGCTGCCGAAGAAGAAGTGGACCGGGATGATGG 720 |||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||| Sbjct 660 ATTACCTCATTGAGTTTCCTAAACTTGAGCCGCCGAAGAAGAAATGGACGGGGATGATGG 719 Query 721 ATAAGAAGCTGGTTGATTGGGATAGCCTCATTGATAAAGTTGTAAGGGAGGGTGGAGAAG 780 |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 720 ATAAGAAGCTTGTTGATTGGGATAGCCTCATTGATAAAGTTGTAAGGGAGGGTGCAGAAG 779 Query 781 TTCCTGAGATTGAATGGTGTGTGCCGGGAGAAGATGCGGGGATGGAAGTATTAATGGGGA 840 ||||||| ||||||||||||||||| ||||||||||| ||||| |||||||| ||||||| Sbjct 780 TTCCTGAAATTGAATGGTGTGTGCCTGGAGAAGATGCAGGGATTGAAGTATTGATGGGGA 839 Query 841 AGAAAGATGGGTTTTTGACAAAGAGGTTGAAGAATTATTCAGCGGACCGGAATAATCCTG 900 | |||||||| |||||||| ||||||||||||||||||||| | ||||||||||||||| Sbjct 840 ATAAAGATGGTTTTTTGACGAAGAGGTTGAAGAATTATTCAACTGACCGGAATAATCCTA 899 Query 901 TAAAGCCGAAAGCACTCTCTGGTCTCTCTCCTTATCTACATTTCGGGCAGATATCAGCTC 960 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 900 TAAAGCCGAAAGCACTCTCTGGTCTCTCTCCTTATCTACATTTCGGGCAGGTATCAGCTC 959 Query 961 AGCGATGTGCCTTGGAGGCGCGTAAAGTCCGGAATACTTCCCCTCAGGCGGTCGACACAT 1020 |||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||| Sbjct 960 AGCGTTGTGCCTTGGAGGCGCGTAAAGTCCGGAGTACTTCCCCTCAGGCGGTAGACACAT 1019 Query 1021 TCTTGGAAGAATTGATTGTGCGAAGAGAACTCTCCGACAATTTTTGCTACTATCAACCTC 1080 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1020 TCTTGGAAGAATTGATTGTGCGAAGAGAACTCTCCGACAATTTTTGCTATTATCAACCTC 1079 Query 1081 ATTATGATTCTTTGAAGGGAGCTTGGGAGTGGGCACGCAAGTCATTAATGGATCATGCTT 1140 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1080 ATTATGATTCTTTGAAGGGAGCTTGGGAGTGGGCACGCAAGTCACTAATGGATCATGCTT 1139 Query 1141 CAGATAAGAGAGAACACATTTACTCGTTGGAGCAGTTAGAGAAGGGACAGACAGCTGATC 1200 |||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||| Sbjct 1140 CAGATAAGAGGGAACACATTTACTCGTTGGAGCAGTTAGAGAAGGGACTGACAGCAGATC 1199 Query 1201 CTCTATGGAATGCTTCACAGTTAGAGATGGTTTATCAAGGGAAAATGCACGGTTTCATGA 1260 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1200 CTCTATGGAATGCTTCACAGTTAGAGATGGTTTATCAAGGGAAAATGCACGGTTTCATGC 1259 Query 1261 GAATGTATTGGGCAAAGAAGATTCTAGAATGGACCAAAGGACCTGAAGAGGCCCTCTCAA 1320 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 1260 GAATGTATTGGGCAAAGAAGATTCTAGAATGGACCAAGGGACCTGAAGAGGCTCTCTCAA 1319 Query 1321 TATCCATATATCTAAATAACAAGTATGAGATTGATGGTCGTGACCCGAGTGGATATGTTG 1380 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1320 TATCCATCTATCTAAATAACAAGTATGAGATTGATGGTCGTGACCCGAGTGGATATGTTG 1379 Query 1381 GGTGTATGTGGTCTATATGCGGTGTTCATGATCAGGGATGGAAAGAGAGGCCGGTTTTTG 1440 |||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 1380 GGTGCATGTGGTCTATATGTGGCGTTCATGATCAGGGATGGAAAGAGAGGCCGGTTTTTG 1439 Query 1441 GGAAGATACGGTACATGAACTACGCGGGTTGCAAACGGAAATTCAATGTGGACAGTTACA 1500 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1440 GGAAGATACGGTACATGAACTACGCGGGTTGCAAACGGAAATTCAATGTGGATAGTTACA 1499 Query 1501 TCTCTTATGTCAAGAGTTTTGTGTCAGTAACAAAGAAGAAGAGGAAAGCCGAAGAACAGC 1560 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 1500 TCTCTTATGTCAAGAGTTTGGTGTCAGTAACAAAGAAGAAGAGGAAAGCTGAAGAACAGC 1559 Query 1561 TTACCAGAGACTCTATTGATCCCAAGATAAATAGTGTTTAGGTTAACTTCGAATGCCTTT 1620 | |||||||||||| ||||||||||||||| || ||||||||||||||| ||||||||| Sbjct 1560 TCACCAGAGACTCTGTTGATCCCAAGATAACTATTGTTTAGGTTAACTTTGAATGCCTTG 1619 Query 1621 GTGTTGTTACTTGTTAGACTACCTTGCCCTGCGTTGGCCAGTTTTATATTCAATGTATT 1679 || ||||||||||||||||||| |||||||| ||||| || |||||||||||| ||||| Sbjct 1620 GTATTGTTACTTGTTAGACTACTTTGCCCTGTGTTGGGCATTTTTATATTCAACGTATT 1678 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82981500885 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5